Wall clock time and date at job start Tue Mar 31 2020 19:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00032 * 2 1 4 4 C 1.53002 * 109.46981 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46666 * 179.97438 * 4 3 2 6 6 C 1.34259 * 125.75052 * 125.00463 * 5 4 3 7 7 C 1.38045 * 107.41649 * 179.97438 * 6 5 4 8 8 C 1.47426 * 126.41745 * 179.97438 * 7 6 5 9 9 O 1.21613 * 119.99734 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00165 * 179.97438 * 8 7 6 11 11 C 1.46507 * 120.00207 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.01469 * 33.61313 * 11 10 8 13 13 C 1.54265 * 110.03211 * 272.17084 * 11 10 8 14 14 C 1.54890 * 104.19358 * 264.32248 * 13 11 10 15 15 C 1.54894 * 102.74813 * 322.05537 * 14 13 11 16 16 C 1.53870 * 110.03466 * 154.99775 * 11 10 8 17 17 H 1.09000 * 110.03284 * 359.95793 * 16 11 10 18 18 C 1.52997 * 110.03686 * 238.57216 * 16 11 10 19 19 N 1.46505 * 109.47212 * 175.00000 * 18 16 11 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00145 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00180 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47586 * 89.99558 * 24 22 20 26 26 H 1.48505 * 109.47293 * 210.00502 * 24 22 20 27 27 H 1.48505 * 109.46772 * 329.99807 * 24 22 20 28 28 C 1.41294 * 107.16976 * 0.22345 * 7 6 5 29 29 N 1.30451 * 108.02151 * 359.61855 * 28 7 6 30 30 H 1.08997 * 109.47396 * 59.99889 * 1 2 3 31 31 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47253 * 299.99660 * 1 2 3 33 33 H 1.09004 * 109.46968 * 59.99939 * 3 2 1 34 34 H 1.08997 * 109.46867 * 299.99995 * 3 2 1 35 35 H 1.08997 * 109.47258 * 60.00532 * 4 3 2 36 36 H 1.08997 * 109.47328 * 299.99727 * 4 3 2 37 37 H 1.08001 * 126.29353 * 359.97438 * 6 5 4 38 38 H 0.97001 * 120.00331 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.48786 * 23.00041 * 13 11 10 40 40 H 1.09005 * 110.48342 * 145.64470 * 13 11 10 41 41 H 1.08998 * 110.75426 * 80.37434 * 14 13 11 42 42 H 1.09001 * 110.75430 * 203.55756 * 14 13 11 43 43 H 1.08994 * 110.48714 * 279.26294 * 15 14 13 44 44 H 1.08998 * 110.48108 * 156.61627 * 15 14 13 45 45 H 1.09002 * 109.47153 * 54.99992 * 18 16 11 46 46 H 1.09001 * 109.46832 * 295.00183 * 18 16 11 47 47 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 48 48 H 0.97010 * 119.99864 * 180.02562 * 23 22 20 49 49 H 1.08002 * 125.98712 * 179.74343 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3269 4.2840 0.5359 8 6 6.2619 5.1859 1.2327 9 8 6.8507 4.8025 2.2254 10 7 6.4651 6.4350 0.7692 11 6 7.3947 7.3312 1.4614 12 1 8.2199 6.7583 1.8845 13 6 6.6564 8.0991 2.5772 14 6 6.2713 9.4475 1.9194 15 6 7.5055 9.7627 1.0381 16 6 7.9346 8.3888 0.4828 17 1 7.5055 8.2349 -0.5073 18 6 9.4606 8.3060 0.4110 19 7 9.9525 9.2343 -0.6101 20 6 11.2963 9.3347 -0.8538 21 1 11.9934 8.7293 -0.2935 22 6 11.7624 10.2146 -1.8208 23 7 13.0540 10.3107 -2.0554 24 14 10.5567 11.2622 -2.7895 25 1 10.3374 12.5483 -2.0803 26 1 11.1090 11.5304 -4.1416 27 1 9.2650 10.5406 -2.9166 28 6 4.5717 4.5882 -0.6189 29 7 3.8695 3.5341 -0.9312 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8575 0.6436 -0.8891 36 1 3.8567 0.6439 0.8908 37 1 5.4234 2.4428 1.7348 38 1 5.9958 6.7408 -0.0228 39 1 5.7630 7.5568 2.8868 40 1 7.3174 8.2646 3.4280 41 1 5.3769 9.3367 1.3064 42 1 6.1262 10.2188 2.6759 43 1 8.3034 10.1969 1.6403 44 1 7.2316 10.4343 0.2245 45 1 9.7575 7.2898 0.1515 46 1 9.8849 8.5725 1.3790 47 1 9.3264 9.7782 -1.1130 48 1 13.3797 10.9260 -2.7310 49 1 4.5766 5.5281 -1.1510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753897637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:05 Heat of formation + Delta-G solvation = -23.739740 kcal Electronic energy + Delta-G solvation = -28336.721062 eV Core-core repulsion = 24299.645079 eV Total energy + Delta-G solvation = -4037.075983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.44515 -40.79503 -39.10527 -38.89284 -36.43286 -35.09047 -34.37506 -33.49346 -31.52358 -30.61580 -30.40059 -28.59226 -27.24111 -26.29364 -24.63268 -24.11838 -23.37199 -21.79080 -21.77909 -21.06775 -20.62592 -19.69860 -18.80821 -17.69979 -17.42801 -17.35685 -16.64431 -16.51018 -16.38309 -16.26693 -15.88721 -15.74753 -15.43974 -15.26451 -14.94134 -14.91048 -14.60875 -14.43710 -14.24269 -13.82412 -13.66416 -13.39784 -13.07932 -12.87388 -12.74173 -12.50358 -12.42348 -12.34520 -12.17166 -11.99790 -11.88721 -11.82661 -11.71586 -11.62818 -11.41749 -10.96829 -10.86784 -10.79138 -10.65861 -10.09449 -9.66654 -9.29058 -8.01612 -5.35727 0.48941 1.13387 1.18040 1.38525 1.43889 1.51045 2.31492 2.48766 2.50124 2.71940 3.29526 3.41336 3.49226 3.71154 3.77698 3.83800 3.84356 3.93114 3.95716 4.11968 4.17726 4.28661 4.40649 4.43839 4.47800 4.50405 4.54380 4.61391 4.63072 4.65299 4.69855 4.76594 4.81630 4.82105 5.02644 5.05145 5.12440 5.20854 5.29657 5.37011 5.37674 5.54008 5.68758 5.74657 5.76120 6.01085 6.21763 6.45441 6.68601 7.09076 7.35347 7.83728 8.06110 9.20100 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.002006 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.195612 B =13952.451526 C =14548.202097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.129 3.871 5 N -0.358 5.358 6 C 0.138 3.862 7 C -0.311 4.311 8 C 0.594 3.406 9 O -0.592 6.592 10 N -0.705 5.705 11 C 0.154 3.846 12 H 0.068 0.932 13 C -0.125 4.125 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.095 4.095 17 H 0.090 0.910 18 C 0.163 3.837 19 N -0.751 5.751 20 C -0.239 4.239 21 H 0.050 0.950 22 C -0.066 4.066 23 N -0.986 5.986 24 Si 0.960 3.040 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.246 1.246 28 C 0.091 3.909 29 N -0.319 5.319 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.207 0.793 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.012 0.988 46 H 0.022 0.978 47 H 0.369 0.631 48 H 0.258 0.742 49 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.315 -16.415 6.337 35.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.020 4.020 4 C 0.009 3.991 5 N -0.138 5.138 6 C -0.014 4.014 7 C -0.326 4.326 8 C 0.383 3.617 9 O -0.473 6.473 10 N -0.356 5.356 11 C 0.048 3.952 12 H 0.086 0.914 13 C -0.163 4.163 14 C -0.148 4.148 15 C -0.155 4.155 16 C -0.114 4.114 17 H 0.108 0.892 18 C 0.037 3.963 19 N -0.397 5.397 20 C -0.370 4.370 21 H 0.068 0.932 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.786 3.214 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.170 1.170 28 C -0.097 4.097 29 N -0.139 5.139 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.224 0.776 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.030 0.970 46 H 0.040 0.960 47 H 0.202 0.798 48 H 0.067 0.933 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -31.517 -17.581 6.230 36.623 hybrid contribution 0.571 1.310 -0.508 1.517 sum -30.946 -16.270 5.722 35.428 Atomic orbital electron populations 1.22967 0.78688 1.04274 1.00949 1.87756 1.22003 1.27030 1.95680 1.22544 0.92537 0.85270 1.01664 1.21736 0.92593 0.77556 1.07212 1.48494 1.32655 1.12530 1.20084 1.23337 0.89887 0.94026 0.94188 1.20219 1.11067 0.96903 1.04382 1.17491 0.80202 0.81256 0.82718 1.90756 1.51690 1.76597 1.28290 1.45775 1.45466 1.12612 1.31738 1.21404 0.91533 0.89846 0.92368 0.91402 1.22688 1.00142 0.96381 0.97112 1.22469 0.97304 0.96314 0.98724 1.22408 0.98177 0.95277 0.99636 1.22130 0.94011 0.95622 0.99648 0.89185 1.20828 0.92745 0.91758 0.90979 1.42587 1.03201 1.49101 1.44836 1.19033 0.83902 1.18240 1.15832 0.93222 1.25576 0.97613 1.01610 1.00877 1.69911 1.14193 1.41945 1.37552 0.85344 0.79378 0.79140 0.77548 1.20089 1.22388 1.17011 1.24508 0.92425 0.98537 0.94255 1.77148 1.25287 0.97350 1.14092 0.93305 0.87836 0.93073 0.92459 0.92444 0.87909 0.84875 0.77585 0.75170 0.91116 0.91144 0.89946 0.90403 0.92298 0.90951 0.97000 0.95967 0.79755 0.93337 0.76784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.41 -4.94 10.70 -148.98 -1.59 -6.53 16 3 C 0.06 0.63 6.11 71.98 0.44 1.07 16 4 C 0.13 1.28 6.86 86.38 0.59 1.87 16 5 N -0.36 -5.46 3.65 -346.30 -1.26 -6.72 16 6 C 0.14 2.27 11.25 84.28 0.95 3.22 16 7 C -0.31 -6.14 6.13 -20.15 -0.12 -6.26 16 8 C 0.59 14.80 7.81 86.66 0.68 15.48 16 9 O -0.59 -19.30 16.55 -4.07 -0.07 -19.36 16 10 N -0.71 -15.05 5.02 -442.35 -2.22 -17.27 16 11 C 0.15 3.88 2.90 45.71 0.13 4.02 16 12 H 0.07 2.12 7.09 -2.38 -0.02 2.10 16 13 C -0.12 -2.68 6.54 31.67 0.21 -2.47 16 14 C -0.11 -2.03 6.91 31.89 0.22 -1.81 16 15 C -0.12 -2.86 6.08 31.67 0.19 -2.67 16 16 C -0.09 -2.59 2.73 -10.07 -0.03 -2.62 16 17 H 0.09 2.26 7.62 -2.39 -0.02 2.24 16 18 C 0.16 6.32 5.31 86.38 0.46 6.78 16 19 N -0.75 -35.08 5.25 -343.45 -1.80 -36.88 16 20 C -0.24 -13.96 10.47 84.03 0.88 -13.08 16 21 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 22 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 23 N -0.99 -64.09 13.97 21.65 0.30 -63.79 16 24 Si 0.96 45.03 27.74 68.60 1.90 46.93 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 28 C 0.09 1.50 11.50 85.65 0.99 2.48 16 29 N -0.32 -5.88 12.33 -56.27 -0.69 -6.57 16 30 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 0.69 8.06 -2.39 -0.02 0.67 16 37 H 0.21 2.52 8.06 -2.91 -0.02 2.49 16 38 H 0.41 6.33 7.27 -92.71 -0.67 5.66 16 39 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 40 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.66 7.76 -2.39 -0.02 1.64 16 44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 47 H 0.37 15.93 5.41 -92.71 -0.50 15.43 16 48 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 49 H 0.22 2.11 7.50 -2.91 -0.02 2.09 16 Total: -1.00 -80.01 403.82 1.58 -78.43 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.28 Total: 27.76 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 7.30 Total: 4.00 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -5.68 Total: -131.23 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -1.66 Total: -25.90 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Total: -80.01 1.58 -78.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.688 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds