Wall clock time and date at job start Tue Mar 31 2020 19:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00292 * 2 1 4 4 C 1.52993 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.34258 * 125.75414 * 125.31642 * 5 4 3 7 7 C 1.38041 * 107.41998 * 180.14436 * 6 5 4 8 8 C 1.47426 * 126.41808 * 179.86992 * 7 6 5 9 9 O 1.21599 * 119.99936 * 359.71973 * 8 7 6 10 10 N 1.34783 * 120.00119 * 179.71497 * 8 7 6 11 11 C 1.46499 * 120.00025 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.05133 * 326.41629 * 11 10 8 13 13 C 1.54080 * 110.00615 * 87.97920 * 11 10 8 14 14 C 1.54260 * 106.62502 * 119.38421 * 13 11 10 15 15 C 1.54897 * 104.19402 * 336.27609 * 14 13 11 16 16 C 1.54267 * 110.02906 * 205.00387 * 11 10 8 17 17 H 1.09002 * 110.48469 * 145.51492 * 16 11 10 18 18 C 1.52993 * 110.49151 * 23.00023 * 16 11 10 19 19 N 1.46496 * 109.47551 * 176.84013 * 18 16 11 20 20 C 1.36934 * 120.00548 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.41293 * 107.16921 * 359.61396 * 7 6 5 29 29 N 1.30453 * 108.02136 * 0.23697 * 28 7 6 30 30 H 1.08994 * 109.47140 * 59.99381 * 1 2 3 31 31 H 1.09004 * 109.47591 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46791 * 299.99759 * 1 2 3 33 33 H 1.09005 * 109.46380 * 60.00010 * 3 2 1 34 34 H 1.08994 * 109.46859 * 300.00708 * 3 2 1 35 35 H 1.09010 * 109.46985 * 60.00171 * 4 3 2 36 36 H 1.09005 * 109.47309 * 300.00515 * 4 3 2 37 37 H 1.08008 * 126.29152 * 359.97438 * 6 5 4 38 38 H 0.97004 * 119.99895 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.11452 * 0.03307 * 13 11 10 40 40 H 1.09007 * 109.92423 * 238.62584 * 13 11 10 41 41 H 1.09001 * 110.48712 * 217.60160 * 14 13 11 42 42 H 1.09004 * 110.49144 * 94.95010 * 14 13 11 43 43 H 1.09003 * 110.75727 * 279.62844 * 15 14 13 44 44 H 1.08998 * 110.91519 * 156.33139 * 15 14 13 45 45 H 1.09004 * 109.46862 * 56.84211 * 18 16 11 46 46 H 1.09004 * 109.46998 * 296.84689 * 18 16 11 47 47 H 0.96999 * 119.99694 * 0.02562 * 19 18 16 48 48 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 49 49 H 1.07997 * 125.99295 * 180.27782 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 4.1314 2.5228 0.0013 6 6 5.0255 2.9830 0.8908 7 6 5.3269 4.2833 0.5389 8 6 6.2628 5.1842 1.2361 9 8 6.8523 4.7995 2.2275 10 7 6.4650 6.4343 0.7744 11 6 7.3954 7.3293 1.4669 12 1 7.3742 7.1336 2.5390 13 6 8.8221 7.1327 0.9192 14 6 9.2614 8.4910 0.3346 15 6 7.9302 9.2124 0.0081 16 6 7.0188 8.7995 1.1905 17 1 7.2249 9.4170 2.0648 18 6 5.5451 8.9095 0.7943 19 7 5.1926 10.3195 0.6107 20 6 3.9174 10.6654 0.2512 21 1 3.1713 9.8985 0.1035 22 6 3.5835 12.0013 0.0768 23 7 2.3576 12.3338 -0.2683 24 14 4.8738 13.3276 0.3330 25 1 4.8581 13.7660 1.7517 26 1 6.2148 12.7850 -0.0025 27 1 4.5743 14.4861 -0.5464 28 6 4.5750 4.5873 -0.6181 29 7 3.8690 3.5352 -0.9285 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6434 -0.8892 36 1 3.8567 0.6437 0.8908 37 1 5.4320 2.4372 1.7295 38 1 5.9945 6.7413 -0.0164 39 1 8.8224 6.3724 0.1382 40 1 9.4929 6.8393 1.7268 41 1 9.8481 8.3442 -0.5723 42 1 9.8313 9.0572 1.0714 43 1 7.5204 8.8578 -0.9377 44 1 8.0686 10.2934 -0.0138 45 1 4.9245 8.4792 1.5804 46 1 5.3780 8.3688 -0.1373 47 1 5.8628 11.0081 0.7431 48 1 2.1243 13.2674 -0.3898 49 1 4.5838 5.5258 -1.1523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753897638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:11 Heat of formation + Delta-G solvation = 6.760219 kcal Electronic energy + Delta-G solvation = -28820.595802 eV Core-core repulsion = 24784.842397 eV Total energy + Delta-G solvation = -4035.753405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.59918 -39.78842 -38.42999 -37.76581 -34.55789 -34.31003 -33.32297 -31.56178 -30.67051 -29.72557 -29.01131 -27.60200 -26.63793 -24.67801 -23.89857 -23.01977 -22.01773 -20.97713 -20.38480 -20.23435 -19.28796 -18.26496 -17.57922 -16.97197 -16.74729 -16.05828 -15.91382 -15.60803 -15.17116 -14.93888 -14.80704 -14.54866 -14.38391 -14.21414 -13.87657 -13.66008 -13.53358 -13.21372 -12.98740 -12.64449 -12.50410 -12.37729 -12.14242 -11.82689 -11.78515 -11.48677 -11.18893 -10.98038 -10.93015 -10.86339 -10.48994 -10.42471 -10.38218 -10.21894 -10.08344 -9.84190 -9.77868 -9.59460 -9.04367 -8.90003 -8.74032 -7.23855 -5.77510 -3.12991 1.34125 1.89629 2.05497 3.28672 3.36408 3.36971 3.39591 3.45028 3.50789 4.13945 4.40230 4.53060 4.54332 4.58586 4.64674 4.73826 4.76485 4.88451 4.89992 4.99253 5.02026 5.09149 5.17588 5.22901 5.33062 5.34257 5.47430 5.53262 5.58420 5.67368 5.70935 5.78189 5.83269 5.88392 6.01902 6.07254 6.20114 6.24117 6.39044 6.42548 6.46755 6.59347 6.64417 6.69312 6.74584 7.30801 7.69519 7.98476 8.39326 8.41520 9.20707 9.93084 10.12894 11.40895 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.002662 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.856551 B =10517.008799 C =12787.949610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.289 4.289 8 C 0.596 3.404 9 O -0.557 6.557 10 N -0.714 5.714 11 C 0.152 3.848 12 H 0.091 0.909 13 C -0.131 4.131 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.112 4.112 17 H 0.087 0.913 18 C 0.169 3.831 19 N -0.753 5.753 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.276 1.276 27 H -0.291 1.291 28 C 0.089 3.911 29 N -0.295 5.295 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.189 0.811 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.029 0.971 46 H 0.023 0.977 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -23.172 0.509 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.014 3.986 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.303 4.303 8 C 0.384 3.616 9 O -0.436 6.436 10 N -0.366 5.366 11 C 0.047 3.953 12 H 0.109 0.891 13 C -0.170 4.170 14 C -0.163 4.163 15 C -0.153 4.153 16 C -0.132 4.132 17 H 0.105 0.895 18 C 0.041 3.959 19 N -0.399 5.399 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.203 1.203 27 H -0.218 1.218 28 C -0.099 4.099 29 N -0.114 5.114 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.206 0.794 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.040 0.960 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.904 -24.282 0.322 24.992 hybrid contribution 0.855 1.846 0.320 2.060 sum 6.759 -22.436 0.643 23.441 Atomic orbital electron populations 1.22792 0.79798 1.03102 1.00581 1.87760 1.20709 1.26896 1.95650 1.22660 0.92355 0.85397 1.02388 1.21474 0.92859 0.78648 1.05608 1.48333 1.32826 1.12092 1.21145 1.22962 0.90717 0.94341 0.94065 1.20302 1.10468 0.96217 1.03360 1.17194 0.80252 0.81180 0.83010 1.90743 1.50608 1.75789 1.26485 1.46027 1.45866 1.12789 1.31954 1.21590 0.87866 0.88455 0.97408 0.89128 1.22611 0.96014 0.97750 1.00595 1.22379 0.97665 0.95847 1.00380 1.22542 0.94202 1.00419 0.98177 1.22535 0.96967 0.94307 0.99361 0.89517 1.20555 0.90907 0.86982 0.97441 1.42691 1.10441 1.01623 1.85125 1.19045 0.86495 0.93055 1.38731 0.89259 1.24673 0.96110 0.96797 1.01593 1.69705 1.17536 1.16934 1.54060 0.86549 0.81698 0.82486 0.77802 1.21122 1.20260 1.21790 1.24197 0.93091 0.97793 0.94865 1.77206 1.24127 0.96861 1.13244 0.93584 0.89167 0.93692 0.92423 0.91290 0.88355 0.87353 0.79449 0.75925 0.91381 0.91457 0.91850 0.91725 0.91112 0.91321 0.95268 0.95958 0.80619 0.93075 0.79029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.18 10.70 -35.23 -0.38 -3.56 16 3 C 0.05 0.39 6.11 37.15 0.23 0.62 16 4 C 0.14 0.95 6.86 -4.05 -0.03 0.92 16 5 N -0.36 -3.58 3.65 -60.81 -0.22 -3.80 16 6 C 0.13 1.32 11.25 -16.56 -0.19 1.14 16 7 C -0.29 -3.49 6.13 -105.07 -0.64 -4.14 16 8 C 0.60 8.29 7.81 -12.52 -0.10 8.19 16 9 O -0.56 -9.25 16.55 5.28 0.09 -9.16 16 10 N -0.71 -9.18 4.34 -53.69 -0.23 -9.41 16 11 C 0.15 2.00 3.13 -66.70 -0.21 1.79 16 12 H 0.09 1.29 7.56 -51.93 -0.39 0.90 16 13 C -0.13 -1.52 6.59 -25.51 -0.17 -1.68 16 14 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 15 C -0.12 -1.55 6.10 -24.73 -0.15 -1.70 16 16 C -0.11 -1.63 2.86 -88.96 -0.25 -1.88 16 17 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.17 3.05 4.80 -4.05 -0.02 3.03 16 19 N -0.75 -17.26 5.27 -59.91 -0.32 -17.57 16 20 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 21 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 23 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 24 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.35 6.52 56.52 0.37 -5.99 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 C 0.09 1.03 11.50 -16.98 -0.20 0.83 16 29 N -0.30 -3.55 12.33 30.86 0.38 -3.17 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.11 0.51 8.06 -51.93 -0.42 0.09 16 37 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.40 4.82 5.47 -40.82 -0.22 4.60 16 39 H 0.07 0.80 7.92 -51.93 -0.41 0.38 16 40 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.39 6.34 -51.93 -0.33 0.06 16 47 H 0.36 8.11 5.44 -40.82 -0.22 7.88 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.19 1.85 7.50 -52.49 -0.39 1.45 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -34.98 400.67 -7.51 -42.50 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.89 Total: 9.42 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.04 Total: -0.03 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.39 Total: -62.37 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.29 Total: -12.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.98 -7.51 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds