Wall clock time and date at job start Tue Mar 31 2020 19:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00292 * 2 1 4 4 C 1.52993 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.34258 * 125.75414 * 125.31642 * 5 4 3 7 7 C 1.38041 * 107.41998 * 180.14436 * 6 5 4 8 8 C 1.47426 * 126.41808 * 179.86992 * 7 6 5 9 9 O 1.21599 * 119.99936 * 359.71973 * 8 7 6 10 10 N 1.34783 * 120.00119 * 179.71497 * 8 7 6 11 11 C 1.46499 * 120.00025 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.05133 * 326.41629 * 11 10 8 13 13 C 1.54080 * 110.00615 * 87.97920 * 11 10 8 14 14 C 1.54260 * 106.62502 * 119.38421 * 13 11 10 15 15 C 1.54897 * 104.19402 * 336.27609 * 14 13 11 16 16 C 1.54267 * 110.02906 * 205.00387 * 11 10 8 17 17 H 1.09002 * 110.48469 * 145.51492 * 16 11 10 18 18 C 1.52993 * 110.49151 * 23.00023 * 16 11 10 19 19 N 1.46496 * 109.47551 * 176.84013 * 18 16 11 20 20 C 1.36934 * 120.00548 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.41293 * 107.16921 * 359.61396 * 7 6 5 29 29 N 1.30453 * 108.02136 * 0.23697 * 28 7 6 30 30 H 1.08994 * 109.47140 * 59.99381 * 1 2 3 31 31 H 1.09004 * 109.47591 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46791 * 299.99759 * 1 2 3 33 33 H 1.09005 * 109.46380 * 60.00010 * 3 2 1 34 34 H 1.08994 * 109.46859 * 300.00708 * 3 2 1 35 35 H 1.09010 * 109.46985 * 60.00171 * 4 3 2 36 36 H 1.09005 * 109.47309 * 300.00515 * 4 3 2 37 37 H 1.08008 * 126.29152 * 359.97438 * 6 5 4 38 38 H 0.97004 * 119.99895 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.11452 * 0.03307 * 13 11 10 40 40 H 1.09007 * 109.92423 * 238.62584 * 13 11 10 41 41 H 1.09001 * 110.48712 * 217.60160 * 14 13 11 42 42 H 1.09004 * 110.49144 * 94.95010 * 14 13 11 43 43 H 1.09003 * 110.75727 * 279.62844 * 15 14 13 44 44 H 1.08998 * 110.91519 * 156.33139 * 15 14 13 45 45 H 1.09004 * 109.46862 * 56.84211 * 18 16 11 46 46 H 1.09004 * 109.46998 * 296.84689 * 18 16 11 47 47 H 0.96999 * 119.99694 * 0.02562 * 19 18 16 48 48 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 49 49 H 1.07997 * 125.99295 * 180.27782 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 4.1314 2.5228 0.0013 6 6 5.0255 2.9830 0.8908 7 6 5.3269 4.2833 0.5389 8 6 6.2628 5.1842 1.2361 9 8 6.8523 4.7995 2.2275 10 7 6.4650 6.4343 0.7744 11 6 7.3954 7.3293 1.4669 12 1 7.3742 7.1336 2.5390 13 6 8.8221 7.1327 0.9192 14 6 9.2614 8.4910 0.3346 15 6 7.9302 9.2124 0.0081 16 6 7.0188 8.7995 1.1905 17 1 7.2249 9.4170 2.0648 18 6 5.5451 8.9095 0.7943 19 7 5.1926 10.3195 0.6107 20 6 3.9174 10.6654 0.2512 21 1 3.1713 9.8985 0.1035 22 6 3.5835 12.0013 0.0768 23 7 2.3576 12.3338 -0.2683 24 14 4.8738 13.3276 0.3330 25 1 4.8581 13.7660 1.7517 26 1 6.2148 12.7850 -0.0025 27 1 4.5743 14.4861 -0.5464 28 6 4.5750 4.5873 -0.6181 29 7 3.8690 3.5352 -0.9285 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6434 -0.8892 36 1 3.8567 0.6437 0.8908 37 1 5.4320 2.4372 1.7295 38 1 5.9945 6.7413 -0.0164 39 1 8.8224 6.3724 0.1382 40 1 9.4929 6.8393 1.7268 41 1 9.8481 8.3442 -0.5723 42 1 9.8313 9.0572 1.0714 43 1 7.5204 8.8578 -0.9377 44 1 8.0686 10.2934 -0.0138 45 1 4.9245 8.4792 1.5804 46 1 5.3780 8.3688 -0.1373 47 1 5.8628 11.0081 0.7431 48 1 2.1243 13.2674 -0.3898 49 1 4.5838 5.5258 -1.1523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753897638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:10 Heat of formation + Delta-G solvation = -17.769894 kcal Electronic energy + Delta-G solvation = -28821.659508 eV Core-core repulsion = 24784.842397 eV Total energy + Delta-G solvation = -4036.817111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.45332 -40.87109 -39.08415 -38.85987 -36.36053 -35.08844 -34.33083 -33.54762 -31.52718 -30.62530 -30.38896 -28.54083 -27.22299 -26.28732 -24.61450 -23.96730 -23.79123 -21.77103 -21.37621 -21.24852 -20.59134 -19.58826 -19.02604 -17.72484 -17.38773 -17.10925 -16.70751 -16.52386 -16.41892 -16.12574 -15.88932 -15.72631 -15.55838 -15.20982 -15.04200 -14.90940 -14.55983 -14.46248 -14.30399 -13.82746 -13.65312 -13.51276 -13.07465 -12.88878 -12.74524 -12.62790 -12.37633 -12.24978 -12.06008 -11.97132 -11.92512 -11.80328 -11.66425 -11.56052 -11.41807 -10.93055 -10.88245 -10.80319 -10.66236 -10.08319 -9.66645 -9.26884 -8.00546 -5.33697 0.49655 1.11277 1.19267 1.39556 1.43196 1.50533 2.34855 2.48760 2.50635 2.70312 3.30486 3.38010 3.51155 3.71675 3.77253 3.83679 3.84538 3.86082 4.03810 4.11613 4.17708 4.28355 4.42509 4.43540 4.47111 4.51572 4.56908 4.58382 4.61267 4.65909 4.68073 4.74452 4.80951 4.83062 4.90744 5.07303 5.16044 5.26600 5.29090 5.34461 5.39468 5.52246 5.67055 5.76417 5.78406 5.99224 6.23249 6.44539 6.65540 7.10601 7.32918 7.86665 8.06099 9.21013 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.002662 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.856551 B =10517.008799 C =12787.949610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.132 3.868 5 N -0.358 5.358 6 C 0.142 3.858 7 C -0.313 4.313 8 C 0.597 3.403 9 O -0.587 6.587 10 N -0.711 5.711 11 C 0.155 3.845 12 H 0.079 0.921 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.104 4.104 17 H 0.088 0.912 18 C 0.168 3.832 19 N -0.754 5.754 20 C -0.231 4.231 21 H 0.056 0.944 22 C -0.066 4.066 23 N -0.986 5.986 24 Si 0.954 3.046 25 H -0.281 1.281 26 H -0.245 1.245 27 H -0.298 1.298 28 C 0.086 3.914 29 N -0.320 5.320 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.214 0.786 38 H 0.407 0.593 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.015 0.985 46 H 0.033 0.967 47 H 0.367 0.633 48 H 0.257 0.743 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -24.124 0.798 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.023 4.023 4 C 0.012 3.988 5 N -0.137 5.137 6 C -0.010 4.010 7 C -0.328 4.328 8 C 0.386 3.614 9 O -0.469 6.469 10 N -0.363 5.363 11 C 0.050 3.950 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.123 4.123 17 H 0.107 0.893 18 C 0.041 3.959 19 N -0.399 5.399 20 C -0.362 4.362 21 H 0.074 0.926 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.781 3.219 25 H -0.208 1.208 26 H -0.170 1.170 27 H -0.225 1.225 28 C -0.102 4.102 29 N -0.140 5.140 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.155 0.845 37 H 0.231 0.769 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.033 0.967 46 H 0.051 0.949 47 H 0.200 0.800 48 H 0.066 0.934 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 8.274 -25.276 0.599 26.603 hybrid contribution 0.001 1.975 0.240 1.990 sum 8.275 -23.301 0.839 24.741 Atomic orbital electron populations 1.22971 0.78785 1.04339 1.00827 1.87739 1.21887 1.26808 1.95664 1.22558 0.92996 0.85312 1.01456 1.21747 0.92170 0.77435 1.07495 1.48535 1.32367 1.12492 1.20336 1.23364 0.89774 0.93807 0.94066 1.20276 1.11322 0.97029 1.04123 1.17396 0.80040 0.81374 0.82587 1.90718 1.51974 1.76391 1.27831 1.46000 1.45767 1.12638 1.31889 1.21550 0.89030 0.87439 0.96996 0.90265 1.22545 0.94691 0.98228 1.00772 1.22322 0.96504 0.94976 1.01336 1.22531 0.95193 1.00310 0.97304 1.22433 0.94385 0.95475 1.00051 0.89336 1.20688 0.93369 0.84393 0.97423 1.42671 1.08734 1.03785 1.84760 1.19024 0.87788 0.92341 1.37018 0.92573 1.25512 0.98392 0.99465 1.02327 1.69892 1.20128 1.17254 1.56358 0.85424 0.80190 0.78819 0.77481 1.20777 1.16960 1.22461 1.24389 0.92797 0.98202 0.94831 1.77166 1.24808 0.97559 1.14454 0.93507 0.87498 0.93311 0.92854 0.92772 0.87493 0.84475 0.76925 0.75508 0.91329 0.90761 0.90342 0.90589 0.91429 0.91880 0.96721 0.94885 0.80001 0.93432 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.10 10.70 -148.98 -1.59 -7.70 16 3 C 0.05 0.81 6.11 71.98 0.44 1.25 16 4 C 0.13 1.62 6.86 86.38 0.59 2.21 16 5 N -0.36 -6.61 3.65 -346.29 -1.26 -7.87 16 6 C 0.14 2.68 11.25 84.28 0.95 3.63 16 7 C -0.31 -7.37 6.13 -20.15 -0.12 -7.49 16 8 C 0.60 16.26 7.81 86.66 0.68 16.94 16 9 O -0.59 -19.12 16.55 -4.03 -0.07 -19.18 16 10 N -0.71 -17.77 4.34 -442.03 -1.92 -19.68 16 11 C 0.16 3.87 3.13 45.79 0.14 4.01 16 12 H 0.08 2.19 7.56 -2.39 -0.02 2.17 16 13 C -0.12 -2.56 6.59 31.39 0.21 -2.36 16 14 C -0.11 -2.15 6.83 31.67 0.22 -1.93 16 15 C -0.12 -2.81 6.10 31.89 0.19 -2.62 16 16 C -0.10 -2.84 2.86 -9.72 -0.03 -2.87 16 17 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 18 C 0.17 5.97 4.80 86.38 0.41 6.39 16 19 N -0.75 -33.92 5.27 -343.47 -1.81 -35.73 16 20 C -0.23 -12.97 10.47 84.03 0.88 -12.09 16 21 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 22 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 23 N -0.99 -63.13 13.97 21.65 0.30 -62.83 16 24 Si 0.95 44.86 27.74 68.60 1.90 46.76 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 C 0.09 1.96 11.50 85.65 0.99 2.95 16 29 N -0.32 -7.58 12.33 -56.27 -0.69 -8.27 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.14 0.91 8.06 -2.38 -0.02 0.89 16 37 H 0.21 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.41 9.50 5.47 -92.71 -0.51 8.99 16 39 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 40 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.07 1.69 8.00 -2.39 -0.02 1.67 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.01 0.57 8.14 -2.38 -0.02 0.56 16 46 H 0.03 1.13 6.34 -2.39 -0.02 1.11 16 47 H 0.37 15.69 5.44 -92.71 -0.50 15.18 16 48 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 49 H 0.20 3.90 7.50 -2.91 -0.02 3.88 16 Total: -1.00 -76.10 400.67 2.01 -74.09 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.11 Total: 34.24 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 7.26 Total: 6.18 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -5.38 Total: -134.38 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.66 Total: -26.88 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Total: -76.10 2.01 -74.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.316 kcal (2) G-P(sol) polarization free energy of solvation -76.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds