Wall clock time and date at job start Tue Mar 31 2020 19:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00313 * 2 1 4 4 C 1.52998 * 109.47026 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47233 * 180.02562 * 4 3 2 6 6 C 1.34256 * 125.75948 * 124.99834 * 5 4 3 7 7 C 1.38047 * 107.42380 * 179.97438 * 6 5 4 8 8 C 1.47420 * 126.41760 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00242 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99901 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99964 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.05850 * 326.41222 * 11 10 8 13 13 C 1.53873 * 110.03282 * 87.83174 * 11 10 8 14 14 C 1.54264 * 106.59940 * 119.28460 * 13 11 10 15 15 C 1.54892 * 104.19740 * 23.61232 * 14 13 11 16 16 C 1.54268 * 110.03421 * 204.99883 * 11 10 8 17 17 H 1.09005 * 110.48085 * 335.91795 * 16 11 10 18 18 C 1.52997 * 110.48644 * 98.42428 * 16 11 10 19 19 N 1.46506 * 109.47289 * 185.00175 * 18 16 11 20 20 C 1.36930 * 120.00258 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99823 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00439 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00195 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99374 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47228 * 89.99744 * 24 22 20 26 26 H 1.48499 * 109.46828 * 209.99736 * 24 22 20 27 27 H 1.48502 * 109.47200 * 329.99649 * 24 22 20 28 28 C 1.41292 * 107.16530 * 0.22556 * 7 6 5 29 29 N 1.30454 * 108.02468 * 359.61807 * 28 7 6 30 30 H 1.08998 * 109.47237 * 59.99449 * 1 2 3 31 31 H 1.08989 * 109.47649 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46528 * 300.00274 * 1 2 3 33 33 H 1.08990 * 109.46970 * 60.00145 * 3 2 1 34 34 H 1.08996 * 109.46818 * 299.99934 * 3 2 1 35 35 H 1.09000 * 109.47303 * 59.99507 * 4 3 2 36 36 H 1.09003 * 109.46926 * 299.99767 * 4 3 2 37 37 H 1.08001 * 126.28791 * 359.95237 * 6 5 4 38 38 H 0.97002 * 120.00350 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.03240 * 238.56592 * 13 11 10 40 40 H 1.08992 * 110.03246 * 0.02562 * 13 11 10 41 41 H 1.09000 * 110.48603 * 142.28639 * 14 13 11 42 42 H 1.09000 * 110.49022 * 264.93172 * 14 13 11 43 43 H 1.09004 * 110.75814 * 203.74373 * 15 14 13 44 44 H 1.08992 * 110.76090 * 80.36989 * 15 14 13 45 45 H 1.09001 * 109.47289 * 65.00047 * 18 16 11 46 46 H 1.09004 * 109.47261 * 305.00303 * 18 16 11 47 47 H 0.97001 * 119.99251 * 0.02562 * 19 18 16 48 48 H 0.97000 * 119.99761 * 179.97438 * 23 22 20 49 49 H 1.07995 * 125.98504 * 179.73802 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1315 2.5227 0.0000 6 6 5.0218 2.9847 0.8924 7 6 5.3276 4.2831 0.5370 8 6 6.2632 5.1841 1.2343 9 8 6.8518 4.7998 2.2266 10 7 6.4654 6.4340 0.7727 11 6 7.3955 7.3292 1.4653 12 1 7.3741 7.1337 2.5374 13 6 8.8213 7.1309 0.9217 14 6 9.2614 8.4875 0.3337 15 6 8.3822 9.5257 1.0743 16 6 7.0189 8.7994 1.1887 17 1 6.4612 8.8812 0.2557 18 6 6.2035 9.3710 2.3503 19 7 5.7570 10.7251 2.0138 20 6 5.0063 11.4405 2.9080 21 1 4.7436 11.0066 3.8615 22 6 4.5836 12.7238 2.5895 23 7 3.8616 13.4112 3.4488 24 14 5.0386 13.4745 0.9405 25 1 3.9891 13.1486 -0.0582 26 1 5.1475 14.9488 1.0810 27 1 6.3410 12.9229 0.4879 28 6 4.5716 4.5887 -0.6169 29 7 3.8691 3.5350 -0.9300 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6887 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8567 0.6436 -0.8908 36 1 3.8574 0.6434 0.8892 37 1 5.4244 2.4406 1.7339 38 1 5.9956 6.7407 -0.0186 39 1 9.4919 6.8392 1.7300 40 1 8.8212 6.3691 0.1423 41 1 10.3170 8.6672 0.5374 42 1 9.0680 8.5194 -0.7385 43 1 8.2853 10.4389 0.4870 44 1 8.7889 9.7418 2.0621 45 1 6.8226 9.4047 3.2468 46 1 5.3357 8.7368 2.5317 47 1 5.9933 11.1149 1.1576 48 1 3.5666 14.3081 3.2263 49 1 4.5762 5.5291 -1.1478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753897639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:15 Heat of formation + Delta-G solvation = 1.849472 kcal Electronic energy + Delta-G solvation = -28408.990890 eV Core-core repulsion = 24373.024539 eV Total energy + Delta-G solvation = -4035.966351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70306 -39.71519 -38.50752 -37.81517 -34.62925 -34.39267 -33.42679 -31.52624 -30.77873 -29.81458 -29.01438 -27.59802 -26.70862 -24.67222 -23.95980 -23.02452 -21.77546 -21.08760 -20.75475 -20.02962 -19.60836 -18.24038 -17.53778 -16.97559 -16.80314 -16.41808 -15.97856 -15.75888 -15.25573 -15.04054 -14.63646 -14.49274 -14.37909 -14.22110 -13.89024 -13.74555 -13.40829 -13.26526 -13.07603 -12.62954 -12.58065 -12.28242 -12.23329 -11.91368 -11.82159 -11.66349 -11.31539 -11.05552 -10.91298 -10.77815 -10.50547 -10.44910 -10.37011 -10.29989 -10.08132 -9.95987 -9.82962 -9.56920 -9.11882 -8.87166 -8.81953 -7.20123 -5.74403 -3.09492 1.24675 1.79059 1.93415 3.20030 3.27846 3.37659 3.39846 3.42696 3.45861 4.04935 4.31699 4.44643 4.45758 4.59884 4.61032 4.65361 4.77746 4.79678 4.82345 4.91365 4.99027 4.99671 5.09155 5.15887 5.22980 5.35967 5.43606 5.50470 5.58874 5.63112 5.72810 5.74569 5.85227 5.88554 6.01582 6.07697 6.18992 6.22447 6.37362 6.38386 6.47580 6.50405 6.59665 6.72577 6.84797 7.18506 7.59991 8.02615 8.32071 8.44681 9.24128 9.96257 10.16565 11.44223 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.002308 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.812488 B =12128.241384 C =13795.525830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.363 5.363 6 C 0.132 3.868 7 C -0.288 4.288 8 C 0.595 3.405 9 O -0.551 6.551 10 N -0.716 5.716 11 C 0.150 3.850 12 H 0.096 0.904 13 C -0.131 4.131 14 C -0.125 4.125 15 C -0.114 4.114 16 C -0.107 4.107 17 H 0.078 0.922 18 C 0.165 3.835 19 N -0.754 5.754 20 C -0.241 4.241 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.885 3.115 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C 0.086 3.914 29 N -0.297 5.297 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.190 0.810 38 H 0.398 0.602 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -26.663 -10.916 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.019 4.019 7 C -0.303 4.303 8 C 0.382 3.618 9 O -0.430 6.430 10 N -0.366 5.366 11 C 0.045 3.955 12 H 0.114 0.886 13 C -0.170 4.170 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.126 4.126 17 H 0.097 0.903 18 C 0.038 3.962 19 N -0.400 5.400 20 C -0.371 4.371 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.102 4.102 29 N -0.116 5.116 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.470 -27.703 -10.809 29.773 hybrid contribution 0.268 1.444 -0.969 1.760 sum 1.738 -26.258 -11.777 28.831 Atomic orbital electron populations 1.22794 0.79769 1.03170 1.00538 1.87767 1.20728 1.26829 1.95638 1.22653 0.92359 0.85458 1.02298 1.21492 0.92854 0.78586 1.05720 1.48321 1.33018 1.12077 1.20899 1.23001 0.90560 0.94375 0.93977 1.20317 1.10337 0.96323 1.03347 1.17185 0.80329 0.81173 0.83064 1.90769 1.50356 1.75670 1.26185 1.45920 1.46023 1.13026 1.31592 1.21656 0.87671 0.88207 0.97993 0.88615 1.22547 0.96194 0.97592 1.00648 1.22383 0.99539 0.94726 0.99604 1.22492 0.93937 0.97592 1.01143 1.22488 0.97091 0.92633 1.00379 0.90332 1.20669 0.95168 0.86409 0.93976 1.42676 1.64637 1.13600 1.19044 1.19071 1.23696 0.96150 0.98198 0.89285 1.24680 1.00108 0.96834 0.97721 1.69704 1.41300 1.12031 1.35320 0.86535 0.78155 0.78694 0.85069 1.21180 1.21804 1.20292 1.24132 0.93334 0.97749 0.94990 1.77176 1.24263 0.96785 1.13408 0.93630 0.89112 0.93672 0.92411 0.91403 0.88306 0.87248 0.79343 0.76760 0.91241 0.91628 0.91776 0.91904 0.91228 0.90721 0.95283 0.95518 0.80720 0.93115 0.79181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.88 10.70 -35.23 -0.38 -3.25 16 3 C 0.05 0.34 6.11 37.16 0.23 0.57 16 4 C 0.13 0.82 6.86 -4.05 -0.03 0.80 16 5 N -0.36 -3.19 3.65 -60.81 -0.22 -3.42 16 6 C 0.13 1.23 11.25 -16.56 -0.19 1.04 16 7 C -0.29 -3.16 6.13 -105.07 -0.64 -3.80 16 8 C 0.60 7.83 7.81 -12.52 -0.10 7.73 16 9 O -0.55 -9.05 16.55 5.27 0.09 -8.96 16 10 N -0.72 -8.40 4.97 -53.80 -0.27 -8.67 16 11 C 0.15 1.96 2.82 -66.81 -0.19 1.77 16 12 H 0.10 1.45 7.26 -51.93 -0.38 1.08 16 13 C -0.13 -1.51 6.59 -25.61 -0.17 -1.68 16 14 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 15 C -0.11 -1.55 6.19 -24.74 -0.15 -1.70 16 16 C -0.11 -1.54 2.59 -88.96 -0.23 -1.77 16 17 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 18 C 0.16 3.16 5.54 -4.04 -0.02 3.14 16 19 N -0.75 -17.70 5.30 -59.90 -0.32 -18.02 16 20 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 21 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 22 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 23 N -0.94 -29.61 13.97 55.49 0.78 -28.83 16 24 Si 0.88 22.02 27.74 -169.99 -4.71 17.30 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 28 C 0.09 0.84 11.50 -16.98 -0.20 0.64 16 29 N -0.30 -3.11 12.33 30.86 0.38 -2.73 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.33 8.14 -51.94 -0.42 -0.09 16 32 H 0.04 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.44 8.06 -51.93 -0.42 0.02 16 37 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.40 3.77 7.31 -40.82 -0.30 3.47 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 45 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.36 8.16 5.50 -40.82 -0.22 7.94 16 48 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 49 H 0.19 1.32 7.50 -52.49 -0.39 0.92 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -35.98 404.40 -7.58 -43.56 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.02 Total: 7.51 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.00 Total: -0.59 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.35 Total: -61.67 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.29 Total: -12.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.98 -7.58 -43.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.410 kcal (2) G-P(sol) polarization free energy of solvation -35.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds