Wall clock time and date at job start Tue Mar 31 2020 19:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00313 * 2 1 4 4 C 1.52998 * 109.47026 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47233 * 180.02562 * 4 3 2 6 6 C 1.34256 * 125.75948 * 124.99834 * 5 4 3 7 7 C 1.38047 * 107.42380 * 179.97438 * 6 5 4 8 8 C 1.47420 * 126.41760 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00242 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99901 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99964 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.05850 * 326.41222 * 11 10 8 13 13 C 1.53873 * 110.03282 * 87.83174 * 11 10 8 14 14 C 1.54264 * 106.59940 * 119.28460 * 13 11 10 15 15 C 1.54892 * 104.19740 * 23.61232 * 14 13 11 16 16 C 1.54268 * 110.03421 * 204.99883 * 11 10 8 17 17 H 1.09005 * 110.48085 * 335.91795 * 16 11 10 18 18 C 1.52997 * 110.48644 * 98.42428 * 16 11 10 19 19 N 1.46506 * 109.47289 * 185.00175 * 18 16 11 20 20 C 1.36930 * 120.00258 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99823 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00439 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00195 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99374 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47228 * 89.99744 * 24 22 20 26 26 H 1.48499 * 109.46828 * 209.99736 * 24 22 20 27 27 H 1.48502 * 109.47200 * 329.99649 * 24 22 20 28 28 C 1.41292 * 107.16530 * 0.22556 * 7 6 5 29 29 N 1.30454 * 108.02468 * 359.61807 * 28 7 6 30 30 H 1.08998 * 109.47237 * 59.99449 * 1 2 3 31 31 H 1.08989 * 109.47649 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46528 * 300.00274 * 1 2 3 33 33 H 1.08990 * 109.46970 * 60.00145 * 3 2 1 34 34 H 1.08996 * 109.46818 * 299.99934 * 3 2 1 35 35 H 1.09000 * 109.47303 * 59.99507 * 4 3 2 36 36 H 1.09003 * 109.46926 * 299.99767 * 4 3 2 37 37 H 1.08001 * 126.28791 * 359.95237 * 6 5 4 38 38 H 0.97002 * 120.00350 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.03240 * 238.56592 * 13 11 10 40 40 H 1.08992 * 110.03246 * 0.02562 * 13 11 10 41 41 H 1.09000 * 110.48603 * 142.28639 * 14 13 11 42 42 H 1.09000 * 110.49022 * 264.93172 * 14 13 11 43 43 H 1.09004 * 110.75814 * 203.74373 * 15 14 13 44 44 H 1.08992 * 110.76090 * 80.36989 * 15 14 13 45 45 H 1.09001 * 109.47289 * 65.00047 * 18 16 11 46 46 H 1.09004 * 109.47261 * 305.00303 * 18 16 11 47 47 H 0.97001 * 119.99251 * 0.02562 * 19 18 16 48 48 H 0.97000 * 119.99761 * 179.97438 * 23 22 20 49 49 H 1.07995 * 125.98504 * 179.73802 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1315 2.5227 0.0000 6 6 5.0218 2.9847 0.8924 7 6 5.3276 4.2831 0.5370 8 6 6.2632 5.1841 1.2343 9 8 6.8518 4.7998 2.2266 10 7 6.4654 6.4340 0.7727 11 6 7.3955 7.3292 1.4653 12 1 7.3741 7.1337 2.5374 13 6 8.8213 7.1309 0.9217 14 6 9.2614 8.4875 0.3337 15 6 8.3822 9.5257 1.0743 16 6 7.0189 8.7994 1.1887 17 1 6.4612 8.8812 0.2557 18 6 6.2035 9.3710 2.3503 19 7 5.7570 10.7251 2.0138 20 6 5.0063 11.4405 2.9080 21 1 4.7436 11.0066 3.8615 22 6 4.5836 12.7238 2.5895 23 7 3.8616 13.4112 3.4488 24 14 5.0386 13.4745 0.9405 25 1 3.9891 13.1486 -0.0582 26 1 5.1475 14.9488 1.0810 27 1 6.3410 12.9229 0.4879 28 6 4.5716 4.5887 -0.6169 29 7 3.8691 3.5350 -0.9300 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6887 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8567 0.6436 -0.8908 36 1 3.8574 0.6434 0.8892 37 1 5.4244 2.4406 1.7339 38 1 5.9956 6.7407 -0.0186 39 1 9.4919 6.8392 1.7300 40 1 8.8212 6.3691 0.1423 41 1 10.3170 8.6672 0.5374 42 1 9.0680 8.5194 -0.7385 43 1 8.2853 10.4389 0.4870 44 1 8.7889 9.7418 2.0621 45 1 6.8226 9.4047 3.2468 46 1 5.3357 8.7368 2.5317 47 1 5.9933 11.1149 1.1576 48 1 3.5666 14.3081 3.2263 49 1 4.5762 5.5291 -1.1478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753897639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:14 Heat of formation + Delta-G solvation = -24.256999 kcal Electronic energy + Delta-G solvation = -28410.122952 eV Core-core repulsion = 24373.024539 eV Total energy + Delta-G solvation = -4037.098413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.44269 -40.75507 -39.09650 -38.88411 -36.43002 -35.10575 -34.43611 -33.53477 -31.52643 -30.63441 -30.41509 -28.51008 -27.23192 -26.28556 -24.61811 -24.06177 -23.42540 -21.81429 -21.73405 -21.13157 -20.62087 -19.71434 -18.83372 -17.69910 -17.49187 -17.34815 -16.60593 -16.54113 -16.41004 -16.27814 -15.87707 -15.60583 -15.42130 -15.19930 -14.99360 -14.92971 -14.57665 -14.35156 -14.27821 -13.82897 -13.74545 -13.42201 -13.08227 -12.91643 -12.76075 -12.73266 -12.38654 -12.35022 -12.12559 -12.00413 -11.92222 -11.81657 -11.64654 -11.59070 -11.38529 -10.96443 -10.87473 -10.80322 -10.65927 -10.09034 -9.66562 -9.29006 -8.01614 -5.35612 0.48862 1.12378 1.19394 1.39076 1.44115 1.51650 2.33197 2.49098 2.50299 2.70546 3.28988 3.38606 3.49461 3.70528 3.77492 3.83785 3.84697 3.94183 3.95349 4.12229 4.17500 4.28226 4.41283 4.43232 4.46704 4.50934 4.56117 4.60986 4.61630 4.63952 4.67137 4.73496 4.79910 4.81034 5.01653 5.05816 5.15218 5.24291 5.28515 5.34012 5.37221 5.52471 5.69385 5.74805 5.76110 5.99362 6.21875 6.45270 6.68350 7.09108 7.35138 7.83847 8.06319 9.20201 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.002308 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.812488 B =12128.241384 C =13795.525830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.055 3.945 4 C 0.131 3.869 5 N -0.359 5.359 6 C 0.138 3.862 7 C -0.311 4.311 8 C 0.595 3.405 9 O -0.591 6.591 10 N -0.707 5.707 11 C 0.155 3.845 12 H 0.069 0.931 13 C -0.124 4.124 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.095 4.095 17 H 0.095 0.905 18 C 0.164 3.836 19 N -0.751 5.751 20 C -0.237 4.237 21 H 0.049 0.951 22 C -0.068 4.068 23 N -0.986 5.986 24 Si 0.961 3.039 25 H -0.276 1.276 26 H -0.297 1.297 27 H -0.244 1.244 28 C 0.090 3.910 29 N -0.320 5.320 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.208 0.792 38 H 0.411 0.589 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.017 0.983 46 H 0.014 0.986 47 H 0.369 0.631 48 H 0.258 0.742 49 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -27.788 -13.793 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.022 4.022 4 C 0.011 3.989 5 N -0.138 5.138 6 C -0.014 4.014 7 C -0.326 4.326 8 C 0.384 3.616 9 O -0.473 6.473 10 N -0.358 5.358 11 C 0.049 3.951 12 H 0.087 0.913 13 C -0.163 4.163 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.114 4.114 17 H 0.113 0.887 18 C 0.038 3.962 19 N -0.397 5.397 20 C -0.368 4.368 21 H 0.067 0.933 22 C -0.259 4.259 23 N -0.637 5.637 24 Si 0.787 3.213 25 H -0.202 1.202 26 H -0.224 1.224 27 H -0.169 1.169 28 C -0.098 4.098 29 N -0.139 5.139 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.225 0.775 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.035 0.965 46 H 0.032 0.968 47 H 0.203 0.797 48 H 0.067 0.933 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.611 -28.874 -13.734 32.080 hybrid contribution -0.175 1.681 0.058 1.691 sum 2.435 -27.193 -13.676 30.535 Atomic orbital electron populations 1.22967 0.78758 1.04315 1.00862 1.87745 1.21917 1.26910 1.95668 1.22558 0.92880 0.85298 1.01512 1.21732 0.92270 0.77539 1.07372 1.48503 1.32556 1.12528 1.20199 1.23341 0.89913 0.94090 0.94051 1.20235 1.11174 0.96842 1.04373 1.17473 0.80097 0.81505 0.82552 1.90745 1.52067 1.76482 1.27987 1.45813 1.45741 1.12509 1.31735 1.21468 0.89178 0.87511 0.96927 0.91282 1.22475 0.94587 0.98416 1.00772 1.22320 0.99675 0.92788 1.00123 1.22491 0.93703 0.98269 1.00954 1.22352 0.97097 0.93278 0.98682 0.88651 1.20765 0.95120 0.84432 0.95905 1.42591 1.63944 1.14707 1.18449 1.19013 1.23646 0.96556 0.97556 0.93325 1.25601 1.00460 0.97411 1.02426 1.69907 1.43215 1.12477 1.38099 0.85329 0.79424 0.77047 0.79519 1.20177 1.22429 1.16853 1.24498 0.92386 0.98439 0.94477 1.77151 1.24972 0.97410 1.14383 0.93314 0.87632 0.93360 0.92915 0.92479 0.87451 0.84855 0.77493 0.75209 0.91581 0.90672 0.90430 0.90096 0.91330 0.92039 0.96468 0.96758 0.79739 0.93336 0.76933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.48 10.70 -148.98 -1.59 -7.07 16 3 C 0.06 0.71 6.11 71.98 0.44 1.15 16 4 C 0.13 1.38 6.86 86.38 0.59 1.98 16 5 N -0.36 -5.77 3.65 -346.31 -1.26 -7.03 16 6 C 0.14 2.39 11.25 84.28 0.95 3.33 16 7 C -0.31 -6.45 6.13 -20.15 -0.12 -6.58 16 8 C 0.59 15.23 7.81 86.66 0.68 15.90 16 9 O -0.59 -19.45 16.55 -4.04 -0.07 -19.52 16 10 N -0.71 -15.64 4.97 -442.37 -2.20 -17.84 16 11 C 0.15 3.88 2.82 45.72 0.13 4.01 16 12 H 0.07 2.13 7.26 -2.39 -0.02 2.12 16 13 C -0.12 -2.58 6.59 31.32 0.21 -2.37 16 14 C -0.11 -2.07 6.83 31.67 0.22 -1.86 16 15 C -0.12 -2.90 6.19 31.89 0.20 -2.70 16 16 C -0.09 -2.58 2.59 -9.72 -0.03 -2.60 16 17 H 0.10 2.32 7.74 -2.38 -0.02 2.30 16 18 C 0.16 6.31 5.54 86.38 0.48 6.79 16 19 N -0.75 -34.82 5.30 -343.44 -1.82 -36.64 16 20 C -0.24 -13.76 10.47 84.04 0.88 -12.88 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 23 N -0.99 -64.08 13.97 21.65 0.30 -63.78 16 24 Si 0.96 44.87 27.74 68.60 1.90 46.78 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.24 -10.01 6.52 99.48 0.65 -9.36 16 28 C 0.09 1.60 11.50 85.65 0.99 2.59 16 29 N -0.32 -6.25 12.33 -56.27 -0.69 -6.95 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 0.77 8.06 -2.39 -0.02 0.75 16 37 H 0.21 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.41 6.84 7.31 -92.71 -0.68 6.16 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.46 7.92 -2.39 -0.02 1.44 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.06 1.69 7.96 -2.39 -0.02 1.67 16 45 H 0.02 0.71 8.02 -2.39 -0.02 0.69 16 46 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.37 15.82 5.50 -92.71 -0.51 15.31 16 48 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 49 H 0.21 2.46 7.50 -2.91 -0.02 2.44 16 Total: -1.00 -79.69 404.40 1.59 -78.09 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.29 Total: 29.28 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 7.32 Total: 4.68 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -5.67 Total: -132.23 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.66 Total: -26.59 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.78 kcal Total: -79.69 1.59 -78.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753897639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.836 kcal (2) G-P(sol) polarization free energy of solvation -79.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds