Wall clock time and date at job start Tue Mar 31 2020 20:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47063 * 240.00014 * 2 1 3 5 5 N 1.46499 * 109.47634 * 120.00157 * 2 1 3 6 6 N 1.28718 * 125.31384 * 359.97195 * 5 2 1 7 7 N 1.28986 * 108.98601 * 180.02562 * 6 5 2 8 8 C 1.34188 * 107.25437 * 359.97438 * 7 6 5 9 9 C 1.48000 * 126.69935 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99685 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00345 * 0.02645 * 9 8 7 12 12 C 1.47026 * 125.64469 * 359.96049 * 11 9 8 13 13 C 1.54376 * 107.28470 * 178.94160 * 12 11 9 14 14 C 1.55154 * 102.92392 * 337.86069 * 13 12 11 15 15 H 1.08996 * 111.00484 * 277.36492 * 14 13 12 16 16 C 1.52992 * 111.00598 * 153.54525 * 14 13 12 17 17 C 1.53004 * 109.47319 * 178.17997 * 16 14 13 18 18 N 1.46499 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.36931 * 120.00122 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47421 * 125.65119 * 180.02562 * 11 9 8 28 28 N 1.28865 * 125.32486 * 180.28990 * 5 2 1 29 29 H 1.09003 * 109.47090 * 300.00137 * 1 2 3 30 30 H 1.08999 * 109.47212 * 59.99611 * 1 2 3 31 31 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46889 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47219 * 299.99841 * 3 2 1 34 34 H 1.08993 * 109.47363 * 60.00460 * 3 2 1 35 35 H 1.08993 * 109.47383 * 299.99671 * 4 2 1 36 36 H 1.09004 * 109.47244 * 60.00246 * 4 2 1 37 37 H 1.09008 * 109.47049 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.88432 * 298.38728 * 12 11 9 39 39 H 1.08997 * 109.88635 * 59.55701 * 12 11 9 40 40 H 1.08998 * 110.75118 * 219.48640 * 13 12 11 41 41 H 1.09001 * 110.70134 * 96.20622 * 13 12 11 42 42 H 1.09000 * 109.47364 * 58.18017 * 16 14 13 43 43 H 1.08998 * 109.47610 * 298.18079 * 16 14 13 44 44 H 1.08995 * 109.46638 * 60.00097 * 17 16 14 45 45 H 1.08998 * 109.46846 * 300.00550 * 17 16 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 47 47 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.36669 * 85.25692 * 27 11 9 49 49 H 1.08995 * 110.36789 * 322.93453 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1961 6 7 1.2762 -1.2160 2.1071 7 7 2.0308 -1.7388 3.0133 8 6 3.3030 -1.5261 2.6431 9 6 4.5190 -1.9474 3.3740 10 8 5.6182 -1.6886 2.9247 11 7 4.4074 -2.6182 4.5376 12 6 3.1458 -2.9944 5.1921 13 6 3.5090 -3.7675 6.4781 14 6 4.9462 -4.2733 6.1847 15 1 4.9251 -5.1883 5.5929 16 6 5.7301 -4.4806 7.4821 17 6 7.1235 -5.0215 7.1552 18 7 7.8739 -5.2206 8.3975 19 6 9.1555 -5.7008 8.3538 20 1 9.6133 -5.9323 7.4034 21 6 9.8664 -5.8900 9.5310 22 7 9.3087 -5.6073 10.6892 23 14 11.6175 -6.5377 9.4708 24 1 11.5993 -8.0209 9.5422 25 1 12.2598 -6.1110 8.2018 26 1 12.3854 -5.9962 10.6207 27 6 5.5301 -3.0949 5.3656 28 7 3.2580 -0.8620 1.5035 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2495 38 1 2.5781 -2.0991 5.4454 39 1 2.5604 -3.6321 4.5299 40 1 2.8287 -4.6055 6.6301 41 1 3.5029 -3.1028 7.3420 42 1 5.2027 -5.1942 8.1152 43 1 5.8233 -3.5296 8.0063 44 1 7.6508 -4.3079 6.5222 45 1 7.0303 -5.9726 6.6309 46 1 7.4631 -5.0116 9.2510 47 1 9.8056 -5.7392 11.5118 48 1 5.8734 -2.3031 6.0315 49 1 6.3477 -3.4409 4.7333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754915801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:28 Heat of formation + Delta-G solvation = 103.317145 kcal Electronic energy + Delta-G solvation = -28671.798251 eV Core-core repulsion = 24672.524619 eV Total energy + Delta-G solvation = -3999.273632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.76216 -40.16329 -38.21630 -37.79846 -35.14998 -33.89596 -33.22716 -32.54178 -30.99715 -29.49603 -28.34299 -28.23499 -27.54213 -25.56709 -24.88429 -23.80719 -22.94697 -21.30735 -21.12129 -20.33082 -19.90108 -17.85678 -17.75982 -17.09961 -17.06114 -16.30658 -15.83505 -15.09555 -14.86519 -14.72464 -14.61154 -14.35559 -13.94177 -13.61547 -13.53518 -13.33340 -13.19167 -13.12643 -13.02976 -12.92866 -12.71497 -12.52959 -12.52864 -12.21328 -12.19176 -11.80789 -11.66018 -11.42009 -11.33228 -11.20734 -11.01232 -10.80285 -10.70524 -10.60020 -10.50091 -10.38276 -10.31343 -9.94581 -9.62888 -8.82025 -8.81013 -6.86743 -5.71821 -3.00070 0.70173 1.18663 1.27545 2.47125 2.89189 3.47650 3.50307 3.52727 3.54679 3.62809 3.82758 3.93615 4.18524 4.52132 4.55718 4.65811 4.72844 4.75954 4.76403 4.86714 4.91671 4.92200 4.96143 4.97552 5.18862 5.22198 5.32335 5.38063 5.40828 5.51410 5.55309 5.59595 5.66520 5.73565 5.74881 5.85553 5.89705 5.93197 6.09009 6.14143 6.29149 6.41094 6.42924 6.89297 6.93100 7.18968 7.69684 7.75421 7.95177 8.47519 9.58470 10.17080 10.51499 11.51199 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.001803 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.662771 B =15524.933709 C =16153.668475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.125 5.125 6 N -0.058 5.058 7 N -0.254 5.254 8 C 0.132 3.868 9 C 0.627 3.373 10 O -0.509 6.509 11 N -0.597 5.597 12 C 0.104 3.896 13 C -0.129 4.129 14 C -0.094 4.094 15 H 0.087 0.913 16 C -0.114 4.114 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.282 1.282 26 H -0.292 1.292 27 C 0.113 3.887 28 N -0.245 5.245 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.079 0.921 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.216 13.233 -23.541 36.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.039 5.039 6 N -0.051 5.051 7 N -0.128 5.128 8 C -0.151 4.151 9 C 0.408 3.592 10 O -0.381 6.381 11 N -0.331 5.331 12 C -0.018 4.018 13 C -0.167 4.167 14 C -0.114 4.114 15 H 0.105 0.895 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.208 1.208 26 H -0.218 1.218 27 C -0.008 4.008 28 N -0.098 5.098 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.097 0.903 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.050 13.453 -24.060 36.582 hybrid contribution 1.224 -0.335 0.392 1.328 sum -22.826 13.118 -23.668 35.402 Atomic orbital electron populations 1.22110 0.89714 1.04775 1.04505 1.21544 0.96652 0.92902 0.79337 1.22269 1.03606 0.91794 1.04255 1.22269 1.03601 1.01136 0.94917 1.50758 1.00910 1.34180 1.18083 1.78886 1.21755 1.08908 0.95514 1.76235 1.00091 1.17416 1.19074 1.25217 0.94467 1.02077 0.93375 1.15636 0.84686 0.78997 0.79848 1.90879 1.25375 1.55144 1.66694 1.48189 1.10146 1.54343 1.20384 1.22218 0.85339 0.99946 0.94324 1.22779 0.97017 1.00218 0.96668 1.22368 0.94222 0.97482 0.97319 0.89463 1.21687 0.96533 1.01966 0.95071 1.20697 0.89725 0.96881 0.90440 1.42362 1.13623 1.78828 1.03006 1.19253 0.89954 1.34935 0.92760 0.91183 1.24743 0.98580 1.02508 0.95327 1.69666 1.37096 1.54867 0.96720 0.86182 0.84624 0.78489 0.76883 1.21768 1.20756 1.21790 1.22556 0.88719 0.96515 0.93056 1.74998 1.02694 1.16982 1.15172 0.90466 0.89013 0.90456 0.90156 0.88875 0.91250 0.91241 0.88872 0.90163 0.90646 0.90559 0.89647 0.90107 0.91139 0.91484 0.96242 0.96406 0.78321 0.93584 0.90251 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 7.90 37.15 0.29 -0.20 16 2 C 0.18 0.93 1.30 -131.82 -0.17 0.76 16 3 C -0.16 -0.67 8.66 37.16 0.32 -0.34 16 4 C -0.16 -0.67 8.66 37.16 0.32 -0.34 16 5 N -0.12 -1.20 3.72 0.52 0.00 -1.20 16 6 N -0.06 -0.63 12.21 60.35 0.74 0.11 16 7 N -0.25 -3.12 10.09 32.10 0.32 -2.79 16 8 C 0.13 1.79 7.97 -156.24 -1.24 0.55 16 9 C 0.63 9.41 7.87 -12.26 -0.10 9.32 16 10 O -0.51 -9.20 17.35 5.33 0.09 -9.11 16 11 N -0.60 -7.86 3.33 -171.53 -0.57 -8.43 16 12 C 0.10 1.10 5.54 -3.03 -0.02 1.08 16 13 C -0.13 -1.27 6.42 -24.87 -0.16 -1.43 16 14 C -0.09 -1.16 3.04 -88.46 -0.27 -1.42 16 15 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.11 -1.74 4.84 -26.73 -0.13 -1.87 16 17 C 0.15 3.01 6.14 -4.04 -0.02 2.98 16 18 N -0.73 -18.93 5.60 -59.91 -0.34 -19.27 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 23 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 C 0.11 1.52 5.71 -2.52 -0.01 1.50 16 28 N -0.25 -3.07 11.85 32.11 0.38 -2.69 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.08 0.77 7.77 -51.93 -0.40 0.37 16 39 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 44 H 0.02 0.40 7.59 -51.93 -0.39 0.01 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.08 1.09 7.96 -51.93 -0.41 0.67 16 49 H 0.09 1.27 8.00 -51.93 -0.42 0.86 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -35.37 402.32 -7.26 -42.62 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.21 Total: 1.76 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.44 Total: 3.05 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 1.26 Total: -62.24 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.37 -7.26 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754915801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.938 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds