Wall clock time and date at job start Tue Mar 31 2020 20:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47063 * 240.00014 * 2 1 3 5 5 N 1.46499 * 109.47634 * 120.00157 * 2 1 3 6 6 N 1.28718 * 125.31384 * 359.97195 * 5 2 1 7 7 N 1.28986 * 108.98601 * 180.02562 * 6 5 2 8 8 C 1.34188 * 107.25437 * 359.97438 * 7 6 5 9 9 C 1.48000 * 126.69935 * 179.97438 * 8 7 6 10 10 O 1.21540 * 119.99685 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00345 * 0.02645 * 9 8 7 12 12 C 1.47026 * 125.64469 * 359.96049 * 11 9 8 13 13 C 1.54376 * 107.28470 * 178.94160 * 12 11 9 14 14 C 1.55154 * 102.92392 * 337.86069 * 13 12 11 15 15 H 1.08996 * 111.00484 * 277.36492 * 14 13 12 16 16 C 1.52992 * 111.00598 * 153.54525 * 14 13 12 17 17 C 1.53004 * 109.47319 * 178.17997 * 16 14 13 18 18 N 1.46499 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.36931 * 120.00122 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47421 * 125.65119 * 180.02562 * 11 9 8 28 28 N 1.28865 * 125.32486 * 180.28990 * 5 2 1 29 29 H 1.09003 * 109.47090 * 300.00137 * 1 2 3 30 30 H 1.08999 * 109.47212 * 59.99611 * 1 2 3 31 31 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46889 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47219 * 299.99841 * 3 2 1 34 34 H 1.08993 * 109.47363 * 60.00460 * 3 2 1 35 35 H 1.08993 * 109.47383 * 299.99671 * 4 2 1 36 36 H 1.09004 * 109.47244 * 60.00246 * 4 2 1 37 37 H 1.09008 * 109.47049 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.88432 * 298.38728 * 12 11 9 39 39 H 1.08997 * 109.88635 * 59.55701 * 12 11 9 40 40 H 1.08998 * 110.75118 * 219.48640 * 13 12 11 41 41 H 1.09001 * 110.70134 * 96.20622 * 13 12 11 42 42 H 1.09000 * 109.47364 * 58.18017 * 16 14 13 43 43 H 1.08998 * 109.47610 * 298.18079 * 16 14 13 44 44 H 1.08995 * 109.46638 * 60.00097 * 17 16 14 45 45 H 1.08998 * 109.46846 * 300.00550 * 17 16 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 47 47 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.36669 * 85.25692 * 27 11 9 49 49 H 1.08995 * 110.36789 * 322.93453 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1961 6 7 1.2762 -1.2160 2.1071 7 7 2.0308 -1.7388 3.0133 8 6 3.3030 -1.5261 2.6431 9 6 4.5190 -1.9474 3.3740 10 8 5.6182 -1.6886 2.9247 11 7 4.4074 -2.6182 4.5376 12 6 3.1458 -2.9944 5.1921 13 6 3.5090 -3.7675 6.4781 14 6 4.9462 -4.2733 6.1847 15 1 4.9251 -5.1883 5.5929 16 6 5.7301 -4.4806 7.4821 17 6 7.1235 -5.0215 7.1552 18 7 7.8739 -5.2206 8.3975 19 6 9.1555 -5.7008 8.3538 20 1 9.6133 -5.9323 7.4034 21 6 9.8664 -5.8900 9.5310 22 7 9.3087 -5.6073 10.6892 23 14 11.6175 -6.5377 9.4708 24 1 11.5993 -8.0209 9.5422 25 1 12.2598 -6.1110 8.2018 26 1 12.3854 -5.9962 10.6207 27 6 5.5301 -3.0949 5.3656 28 7 3.2580 -0.8620 1.5035 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2495 38 1 2.5781 -2.0991 5.4454 39 1 2.5604 -3.6321 4.5299 40 1 2.8287 -4.6055 6.6301 41 1 3.5029 -3.1028 7.3420 42 1 5.2027 -5.1942 8.1152 43 1 5.8233 -3.5296 8.0063 44 1 7.6508 -4.3079 6.5222 45 1 7.0303 -5.9726 6.6309 46 1 7.4631 -5.0116 9.2510 47 1 9.8056 -5.7392 11.5118 48 1 5.8734 -2.3031 6.0315 49 1 6.3477 -3.4409 4.7333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754915801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:26 Heat of formation + Delta-G solvation = 79.202973 kcal Electronic energy + Delta-G solvation = -28672.843920 eV Core-core repulsion = 24672.524619 eV Total energy + Delta-G solvation = -4000.319301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.63501 -41.25821 -39.06950 -38.61397 -36.86700 -34.84419 -34.57772 -33.61611 -32.61362 -30.74501 -29.03899 -28.55609 -28.51682 -26.84237 -25.67056 -25.34398 -24.24813 -22.72185 -21.90347 -21.36416 -20.94079 -19.14568 -18.73837 -18.59281 -17.77497 -17.48481 -16.89145 -16.64189 -16.15142 -15.40510 -15.32523 -15.25722 -15.21805 -15.13054 -14.96344 -14.40242 -14.21844 -13.98225 -13.91592 -13.49635 -13.37747 -13.29974 -13.24083 -13.00376 -12.97439 -12.86237 -12.80467 -12.65820 -12.40837 -12.27221 -12.16618 -12.14160 -12.11971 -11.96977 -11.70561 -11.64836 -11.56262 -11.46578 -11.39224 -10.91010 -9.89200 -8.98290 -7.94857 -5.23244 -0.21571 0.22152 0.59379 1.47341 1.48758 1.49166 1.57753 1.78331 2.56260 2.62887 2.88014 3.38583 3.43342 3.46763 3.56686 3.59299 3.64085 3.79904 3.91425 4.18517 4.24225 4.30681 4.35359 4.39403 4.50195 4.50782 4.56501 4.57991 4.58813 4.67363 4.71903 4.71996 4.77434 4.86948 4.94253 4.98068 5.00662 5.05720 5.09304 5.15742 5.16513 5.21520 5.29403 5.41099 5.48738 5.51514 6.12034 6.28404 6.61096 7.01024 7.34418 8.11527 8.34689 9.28588 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.001803 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.662771 B =15524.933709 C =16153.668475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.158 4.158 5 N -0.108 5.108 6 N -0.057 5.057 7 N -0.258 5.258 8 C 0.117 3.883 9 C 0.623 3.377 10 O -0.552 6.552 11 N -0.593 5.593 12 C 0.105 3.895 13 C -0.117 4.117 14 C -0.084 4.084 15 H 0.093 0.907 16 C -0.099 4.099 17 C 0.146 3.854 18 N -0.747 5.747 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.285 1.285 25 H -0.272 1.272 26 H -0.293 1.293 27 C 0.110 3.890 28 N -0.260 5.260 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.016 0.984 45 H 0.019 0.981 46 H 0.375 0.625 47 H 0.252 0.748 48 H 0.075 0.925 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.221 13.558 -25.042 38.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.216 4.216 5 N -0.025 5.025 6 N -0.049 5.049 7 N -0.132 5.132 8 C -0.166 4.166 9 C 0.406 3.594 10 O -0.427 6.427 11 N -0.325 5.325 12 C -0.016 4.016 13 C -0.155 4.155 14 C -0.103 4.103 15 H 0.111 0.889 16 C -0.137 4.137 17 C 0.020 3.980 18 N -0.390 5.390 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.212 1.212 25 H -0.197 1.197 26 H -0.220 1.220 27 C -0.011 4.011 28 N -0.115 5.115 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.094 0.906 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.108 13.768 -25.584 39.061 hybrid contribution 1.757 -0.370 0.725 1.937 sum -24.351 13.399 -24.859 37.289 Atomic orbital electron populations 1.22176 0.87716 1.04854 1.05949 1.22224 0.98178 0.93298 0.78202 1.22313 1.02444 0.91142 1.05730 1.22312 1.02439 1.01213 0.95660 1.51314 0.99922 1.32849 1.18409 1.78812 1.21559 1.08941 0.95629 1.76188 0.99474 1.17844 1.19675 1.24925 0.94374 1.03354 0.93992 1.15860 0.84685 0.78725 0.80129 1.90840 1.26960 1.57025 1.67919 1.48261 1.11083 1.53331 1.19802 1.22376 0.84227 1.00504 0.94541 1.22780 0.95321 1.00958 0.96400 1.22227 0.95358 0.97198 0.95542 0.88889 1.21515 0.93955 1.01658 0.96578 1.20890 0.91852 0.96952 0.88294 1.42586 1.13326 1.78644 1.04455 1.19643 0.91278 1.34181 0.92882 0.90972 1.25567 1.02636 1.03526 0.95084 1.69812 1.38539 1.56366 0.97139 0.85144 0.79861 0.77845 0.76944 1.21202 1.19744 1.21989 1.22523 0.88714 0.96982 0.92917 1.74964 1.04232 1.17175 1.15085 0.91057 0.85506 0.91035 0.91997 0.85255 0.91890 0.91866 0.85254 0.92002 0.89923 0.89807 0.87219 0.89307 0.90511 0.91577 0.96638 0.96286 0.79288 0.93963 0.90642 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 7.90 71.98 0.57 -0.03 16 2 C 0.16 1.43 1.30 3.60 0.00 1.44 16 3 C -0.16 -1.04 8.66 71.98 0.62 -0.42 16 4 C -0.16 -1.04 8.66 71.98 0.62 -0.41 16 5 N -0.11 -2.03 3.72 -152.27 -0.57 -2.59 16 6 N -0.06 -1.19 12.21 37.02 0.45 -0.74 16 7 N -0.26 -6.20 10.09 -52.37 -0.53 -6.73 16 8 C 0.12 3.20 7.97 137.15 1.09 4.29 16 9 C 0.62 19.27 7.87 86.83 0.68 19.95 16 10 O -0.55 -20.95 17.35 -3.84 -0.07 -21.01 16 11 N -0.59 -15.55 3.33 -814.88 -2.71 -18.26 16 12 C 0.10 2.05 5.54 86.75 0.48 2.53 16 13 C -0.12 -2.01 6.42 31.80 0.20 -1.81 16 14 C -0.08 -1.94 3.04 -9.40 -0.03 -1.97 16 15 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.10 -2.91 4.84 30.59 0.15 -2.76 16 17 C 0.15 5.86 6.14 86.38 0.53 6.39 16 18 N -0.75 -38.84 5.60 -343.46 -1.92 -40.77 16 19 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 22 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 23 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 27 C 0.11 2.98 5.71 86.87 0.50 3.48 16 28 N -0.26 -6.61 11.85 -52.32 -0.62 -7.23 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.08 1.55 7.77 -2.39 -0.02 1.53 16 39 H 0.08 1.56 7.66 -2.39 -0.02 1.54 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.07 1.98 8.03 -2.39 -0.02 1.96 16 44 H 0.02 0.64 7.59 -2.39 -0.02 0.62 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.38 20.40 7.67 -92.71 -0.71 19.69 16 47 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 48 H 0.08 2.10 7.96 -2.39 -0.02 2.08 16 49 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 Total: -1.00 -78.07 402.32 3.31 -74.76 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.23 Total: 19.84 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.73 Total: 13.23 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -5.62 Total: -136.08 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.07 Total: -21.01 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -78.07 3.31 -74.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754915801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.967 kcal (2) G-P(sol) polarization free energy of solvation -78.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds