Wall clock time and date at job start Tue Mar 31 2020 19:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47017 * 2 1 4 4 C 1.50698 * 109.47548 * 239.99676 * 2 1 3 5 5 O 1.21279 * 120.00485 * 244.90042 * 4 2 1 6 6 N 1.34783 * 119.99648 * 64.89721 * 4 2 1 7 7 C 1.46493 * 119.99995 * 5.41369 * 6 4 2 8 8 C 1.46500 * 119.99694 * 185.41713 * 6 4 2 9 9 C 1.50691 * 109.47512 * 90.00143 * 8 6 4 10 10 H 1.07997 * 119.99970 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00180 * 180.02562 * 9 8 6 12 12 N 1.31513 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00120 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47068 * 59.99624 * 13 11 9 15 15 H 1.48501 * 109.47047 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46905 * 299.99567 * 13 11 9 17 17 N 1.46901 * 109.46967 * 120.00085 * 2 1 3 18 18 C 1.46846 * 111.00012 * 294.99952 * 17 2 1 19 19 C 1.53038 * 109.52881 * 185.84163 * 18 17 2 20 20 C 1.53122 * 109.30870 * 300.80323 * 19 18 17 21 21 C 1.50699 * 109.52358 * 177.57817 * 20 19 18 22 22 N 1.31079 * 126.65572 * 299.68391 * 21 20 19 23 23 N 1.28845 * 107.98489 * 179.89587 * 22 21 20 24 24 N 1.28736 * 109.39853 * 0.37996 * 23 22 21 25 25 N 1.29022 * 108.80803 * 359.75909 * 24 23 22 26 26 C 1.46498 * 126.43525 * 179.97438 * 25 24 23 27 27 C 1.53204 * 109.11513 * 57.63112 * 20 19 18 28 28 C 1.46848 * 111.00522 * 59.20996 * 17 2 1 29 29 H 1.09006 * 109.46992 * 190.62480 * 1 2 3 30 30 H 1.08993 * 109.47586 * 310.62470 * 1 2 3 31 31 H 1.09000 * 109.46889 * 70.63073 * 1 2 3 32 32 H 1.09001 * 109.47275 * 96.09094 * 7 6 4 33 33 H 1.09005 * 109.47129 * 216.08999 * 7 6 4 34 34 H 1.08997 * 109.47319 * 336.09279 * 7 6 4 35 35 H 1.09002 * 109.46548 * 210.00229 * 8 6 4 36 36 H 1.09002 * 109.47158 * 329.99428 * 8 6 4 37 37 H 0.97002 * 119.99780 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46280 * 65.82202 * 18 17 2 39 39 H 1.09007 * 109.46053 * 305.85852 * 18 17 2 40 40 H 1.09003 * 109.50223 * 60.76096 * 19 18 17 41 41 H 1.08998 * 109.50461 * 180.83738 * 19 18 17 42 42 H 1.09003 * 109.52133 * 297.76878 * 20 19 18 43 43 H 1.09007 * 109.47366 * 270.03145 * 26 25 24 44 44 H 1.09002 * 109.47211 * 30.03063 * 26 25 24 45 45 H 1.09001 * 109.46894 * 150.03265 * 26 25 24 46 46 H 1.09009 * 109.49010 * 182.42185 * 27 20 19 47 47 H 1.09002 * 109.52275 * 62.33925 * 27 20 19 48 48 H 1.09002 * 109.45959 * 294.17669 * 28 17 2 49 49 H 1.09001 * 109.45932 * 54.15493 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.6546 -1.7457 -1.1213 6 7 1.7902 -0.1953 -2.4521 7 6 1.1435 1.1129 -2.5803 8 6 2.1736 -0.9437 -3.6517 9 6 1.0320 -1.8309 -4.0766 10 1 0.1129 -1.8370 -3.5096 11 6 1.1613 -2.6356 -5.1887 12 7 2.2807 -2.6284 -5.8790 13 14 -0.2541 -3.7348 -5.7159 14 1 -1.4452 -2.8995 -6.0139 15 1 0.1346 -4.4935 -6.9318 16 1 -0.5772 -4.6849 -4.6213 17 7 2.0196 -0.6925 1.1994 18 6 1.6488 0.0389 2.4176 19 6 2.2964 -0.6293 3.6326 20 6 1.8222 -2.0824 3.7240 21 6 2.5028 -2.7623 4.8840 22 7 3.7927 -2.9314 5.0447 23 7 3.9767 -3.5523 6.1586 24 7 2.8374 -3.7905 6.7087 25 7 1.9040 -3.3187 5.9532 26 6 0.4630 -3.3782 6.2105 27 6 2.1776 -2.8088 2.4228 28 6 1.5334 -2.0775 1.2429 29 1 -0.3633 -1.0101 0.1895 30 1 -0.3634 0.6691 0.7799 31 1 -0.3633 0.3408 -0.9695 32 1 1.9039 1.8829 -2.7110 33 1 0.4800 1.1070 -3.4451 34 1 0.5655 1.3223 -1.6803 35 1 2.4100 -0.2459 -4.4551 36 1 3.0483 -1.5564 -3.4336 37 1 2.3715 -3.1943 -6.6616 38 1 0.5648 0.0280 2.5320 39 1 1.9955 1.0695 2.3422 40 1 3.3809 -0.6065 3.5255 41 1 2.0089 -0.0950 4.5381 42 1 0.7423 -2.1047 3.8701 43 1 0.0540 -4.2913 5.7778 44 1 0.2855 -3.3747 7.2859 45 1 -0.0226 -2.5131 5.7592 46 1 1.8046 -3.8323 2.4640 47 1 3.2602 -2.8209 2.2963 48 1 0.4500 -2.0784 1.3628 49 1 1.7966 -2.5841 0.3144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879915521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:23 Heat of formation + Delta-G solvation = 104.837150 kcal Electronic energy + Delta-G solvation = -30179.085317 eV Core-core repulsion = 26179.877598 eV Total energy + Delta-G solvation = -3999.207719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.38023 -40.18664 -38.31698 -35.97012 -35.18098 -34.86885 -32.78008 -32.08556 -30.95620 -29.85426 -28.68633 -27.59919 -26.23080 -25.44563 -24.10426 -23.51064 -23.31026 -22.38913 -21.42179 -19.59336 -18.44209 -17.79433 -17.46011 -16.55076 -16.50738 -16.11233 -15.68560 -14.97956 -14.87074 -14.71043 -14.56737 -14.19726 -14.11244 -14.09156 -13.67640 -13.51314 -13.12781 -12.86416 -12.79664 -12.39983 -12.37121 -12.32371 -12.07199 -11.90612 -11.64270 -11.48052 -11.36098 -11.18472 -11.13516 -11.06974 -10.99757 -10.92037 -10.80919 -10.56760 -10.56191 -10.17941 -10.01013 -9.65655 -8.75021 -8.45815 -8.11402 -7.62655 -6.06459 -4.11927 0.99983 1.70674 2.07798 3.28093 3.32800 3.33871 3.40826 3.58848 3.66705 3.85010 4.15166 4.25131 4.39409 4.41311 4.54738 4.67371 4.72611 4.90438 4.92865 5.05303 5.15507 5.18072 5.19289 5.21774 5.27649 5.41782 5.44311 5.49161 5.50386 5.55934 5.61174 5.63661 5.78759 5.81504 5.91705 5.92436 6.01722 6.10863 6.22192 6.33794 6.41596 6.96319 7.13834 7.21162 7.46175 7.53836 7.90041 8.21065 8.42095 8.43182 8.87683 9.10038 9.53275 11.01452 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.002655 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.316784 B =10542.115813 C =11206.451610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.065 3.935 3 H 0.101 0.899 4 C 0.513 3.487 5 O -0.524 6.524 6 N -0.601 5.601 7 C 0.070 3.930 8 C 0.246 3.754 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 N -0.512 5.512 18 C 0.057 3.943 19 C -0.104 4.104 20 C -0.006 4.006 21 C 0.197 3.803 22 N -0.293 5.293 23 N -0.076 5.076 24 N -0.103 5.103 25 N -0.314 5.314 26 C 0.078 3.922 27 C -0.101 4.101 28 C 0.038 3.962 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.046 0.954 37 H 0.264 0.736 38 H 0.035 0.965 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.029 0.971 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 6.968 21.242 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.048 4.048 3 H 0.118 0.882 4 C 0.299 3.701 5 O -0.401 6.401 6 N -0.334 5.334 7 C -0.074 4.074 8 C 0.126 3.874 9 C -0.567 4.567 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.236 5.236 18 C -0.071 4.071 19 C -0.143 4.143 20 C -0.028 4.028 21 C -0.081 4.081 22 N -0.142 5.142 23 N -0.070 5.070 24 N -0.089 5.089 25 N -0.115 5.115 26 C -0.064 4.064 27 C -0.140 4.140 28 C -0.089 4.089 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.047 0.953 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.762 5.840 21.815 23.574 hybrid contribution -2.728 -0.302 -0.610 2.811 sum -9.489 5.538 21.205 23.882 Atomic orbital electron populations 1.22621 0.95852 1.03072 1.03553 1.21642 0.93884 0.98849 0.90376 0.88156 1.20024 0.80513 0.85589 0.83987 1.90559 1.40106 1.23943 1.85521 1.48092 1.58835 1.19187 1.07253 1.21929 0.97563 0.85222 1.02700 1.19275 0.96862 0.91180 0.80035 1.21370 1.00303 1.23930 1.11071 0.92629 1.24933 0.95956 0.96819 0.96331 1.69922 1.25175 1.39745 1.18328 0.86583 0.82269 0.80685 0.78004 1.20302 1.21152 1.20228 1.61821 1.59520 1.02113 1.00178 1.22077 0.97549 0.98004 0.89491 1.21616 1.03292 0.91919 0.97456 1.20018 0.98129 0.95574 0.89101 1.26226 0.89996 0.99125 0.92722 1.75063 1.12350 1.15543 1.11213 1.78641 1.14743 1.11661 1.01935 1.78860 0.92955 1.18175 1.18912 1.48443 1.10303 1.37713 1.15062 1.22389 0.72642 1.05589 1.05733 1.21630 1.03885 0.97743 0.90731 1.22582 0.95762 0.89049 1.01465 0.91531 0.92051 0.90066 0.93659 0.91046 0.91303 0.95094 0.93628 0.92614 0.94643 0.90175 0.89224 0.91514 0.89304 0.88360 0.87492 0.87717 0.91503 0.89188 0.95293 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 7.94 37.16 0.30 -1.91 16 2 C 0.06 0.89 1.94 -68.87 -0.13 0.76 16 3 H 0.10 1.20 7.68 -51.93 -0.40 0.80 16 4 C 0.51 10.04 6.76 -10.98 -0.07 9.96 16 5 O -0.52 -12.44 13.24 5.56 0.07 -12.36 16 6 N -0.60 -12.15 2.85 -182.96 -0.52 -12.67 16 7 C 0.07 1.03 9.71 59.84 0.58 1.61 16 8 C 0.25 6.27 5.23 -5.20 -0.03 6.25 16 9 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 10 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 13 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 N -0.51 -6.75 4.47 -228.08 -1.02 -7.77 16 18 C 0.06 0.53 5.04 -3.83 -0.02 0.51 16 19 C -0.10 -0.93 5.36 -26.65 -0.14 -1.07 16 20 C -0.01 -0.06 2.60 -91.60 -0.24 -0.29 16 21 C 0.20 2.16 6.65 -155.43 -1.03 1.12 16 22 N -0.29 -4.23 12.36 32.70 0.40 -3.82 16 23 N -0.08 -1.14 13.43 60.35 0.81 -0.33 16 24 N -0.10 -1.30 13.29 60.35 0.80 -0.50 16 25 N -0.31 -2.94 3.75 -65.03 -0.24 -3.18 16 26 C 0.08 0.28 11.12 59.85 0.67 0.94 16 27 C -0.10 -1.20 5.37 -26.61 -0.14 -1.34 16 28 C 0.04 0.52 4.51 -3.84 -0.02 0.51 16 29 H 0.07 0.83 5.99 -51.93 -0.31 0.52 16 30 H 0.06 0.53 7.21 -51.93 -0.37 0.16 16 31 H 0.08 0.98 5.39 -51.93 -0.28 0.69 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 34 H 0.07 0.80 4.12 -51.93 -0.21 0.58 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.04 0.28 6.98 -51.93 -0.36 -0.08 16 39 H 0.08 0.67 8.08 -51.92 -0.42 0.25 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.54 6.86 -51.93 -0.36 0.19 16 43 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 0.13 7.14 -51.93 -0.37 -0.24 16 46 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.03 0.35 6.39 -51.93 -0.33 0.02 16 49 H 0.12 2.25 5.14 -51.93 -0.27 1.99 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -35.75 382.24 -6.34 -42.09 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.41 Total: -1.90 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.71 Total: 3.86 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.97 Total: -53.75 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.75 -6.34 -42.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879915521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.931 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds