Wall clock time and date at job start Tue Mar 31 2020 19:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47648 * 2 1 4 4 C 1.50701 * 109.46842 * 239.99683 * 2 1 3 5 5 O 1.21289 * 120.00323 * 265.66031 * 4 2 1 6 6 N 1.34775 * 120.00052 * 85.66136 * 4 2 1 7 7 C 1.47431 * 125.64887 * 184.93376 * 6 4 2 8 8 C 1.54914 * 104.83108 * 204.09327 * 7 6 4 9 9 C 1.55161 * 101.58200 * 322.99158 * 8 7 6 10 10 H 1.09003 * 110.71973 * 276.96249 * 9 8 7 11 11 N 1.46496 * 110.71838 * 153.86750 * 9 8 7 12 12 C 1.36936 * 120.00054 * 86.45251 * 11 9 8 13 13 H 1.07998 * 119.99747 * 359.97438 * 12 11 9 14 14 C 1.38809 * 119.99876 * 179.97438 * 12 11 9 15 15 N 1.31618 * 120.00148 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00175 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47145 * 59.99617 * 16 14 12 18 18 H 1.48496 * 109.47677 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46819 * 300.00359 * 16 14 12 20 20 C 1.47026 * 125.64828 * 4.62738 * 6 4 2 21 21 N 1.46499 * 109.47040 * 120.00266 * 2 1 3 22 22 N 1.29024 * 126.44164 * 59.68108 * 21 2 1 23 23 N 1.28736 * 108.80608 * 179.83858 * 22 21 2 24 24 N 1.28839 * 109.40284 * 0.43610 * 23 22 21 25 25 C 1.31075 * 107.98753 * 359.73846 * 24 23 22 26 26 C 1.50698 * 126.65948 * 179.97438 * 25 24 23 27 27 C 1.52994 * 109.47403 * 240.03912 * 26 25 24 28 28 C 1.53001 * 109.47277 * 0.04709 * 26 25 24 29 29 C 1.53002 * 109.46924 * 120.04316 * 26 25 24 30 30 H 1.08999 * 109.47095 * 294.47857 * 1 2 3 31 31 H 1.09009 * 109.47143 * 54.47043 * 1 2 3 32 32 H 1.08991 * 109.47514 * 174.47110 * 1 2 3 33 33 H 1.08996 * 110.36566 * 322.93378 * 7 6 4 34 34 H 1.08996 * 110.36603 * 85.14614 * 7 6 4 35 35 H 1.09001 * 111.00302 * 81.06690 * 8 7 6 36 36 H 1.08995 * 110.99856 * 204.91951 * 8 7 6 37 37 H 0.97000 * 119.99899 * 266.45155 * 11 9 8 38 38 H 0.96998 * 120.00355 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.88004 * 298.39595 * 20 6 4 40 40 H 1.09006 * 109.87815 * 59.56129 * 20 6 4 41 41 H 1.09010 * 109.46791 * 60.00471 * 27 26 25 42 42 H 1.09003 * 109.47446 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.47238 * 300.00590 * 27 26 25 44 44 H 1.08998 * 109.47562 * 59.99080 * 28 26 25 45 45 H 1.09003 * 109.47284 * 180.02562 * 28 26 25 46 46 H 1.09006 * 109.46244 * 299.99470 * 28 26 25 47 47 H 1.08997 * 109.47406 * 59.99475 * 29 26 25 48 48 H 1.09001 * 109.47320 * 180.02562 * 29 26 25 49 49 H 1.09007 * 109.46907 * 299.99644 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 8 2.3093 -1.8902 -1.1790 6 7 2.1736 -0.0350 -2.3881 7 6 2.5539 -0.6234 -3.6853 8 6 3.1693 0.5500 -4.4878 9 6 2.2704 1.7350 -4.0459 10 1 1.3506 1.7601 -4.6303 11 7 2.9916 3.0046 -4.1634 12 6 2.9981 3.6809 -5.3541 13 1 2.4717 3.2779 -6.2067 14 6 3.6811 4.8842 -5.4652 15 7 4.3229 5.3749 -4.4262 16 14 3.6893 5.8071 -7.0892 17 1 2.2956 6.1490 -7.4713 18 1 4.4839 7.0534 -6.9464 19 1 4.2953 4.9520 -8.1413 20 6 1.9679 1.4096 -2.5679 21 7 2.0183 -0.6907 1.1961 22 7 1.7797 -1.9152 1.5251 23 7 2.3771 -2.1703 2.6366 24 7 2.9975 -1.1159 3.0408 25 6 2.7952 -0.1652 2.1615 26 6 3.3286 1.2431 2.2202 27 6 2.1602 2.2305 2.2414 28 6 4.1676 1.4183 3.4876 29 6 4.1997 1.5101 0.9911 30 1 -0.3633 0.4258 0.9353 31 1 -0.3634 0.5972 -0.8364 32 1 -0.3634 -1.0228 -0.0990 33 1 3.2914 -1.4131 -3.5420 34 1 1.6746 -1.0149 -4.1967 35 1 4.2071 0.7184 -4.2000 36 1 3.0864 0.3756 -5.5605 37 1 3.4647 3.3663 -3.3976 38 1 4.7999 6.2160 -4.5037 39 1 0.9357 1.6691 -2.3329 40 1 2.6482 1.9641 -1.9215 41 1 1.5396 2.0403 3.1171 42 1 2.5460 3.2491 2.2843 43 1 1.5626 2.1057 1.3384 44 1 5.0000 0.7147 3.4726 45 1 4.5530 2.4370 3.5303 46 1 3.5469 1.2280 4.3633 47 1 3.6022 1.3852 0.0881 48 1 4.5859 2.5285 1.0337 49 1 5.0323 0.8066 0.9760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018948721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:28 Heat of formation + Delta-G solvation = 97.098703 kcal Electronic energy + Delta-G solvation = -30909.833339 eV Core-core repulsion = 26910.290055 eV Total energy + Delta-G solvation = -3999.543284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.30887 -40.36296 -37.89400 -37.61468 -35.86709 -34.31079 -32.46015 -31.62370 -31.22138 -29.77589 -27.94124 -27.79934 -27.73776 -25.83129 -24.24360 -23.93717 -23.55122 -22.16005 -20.55026 -20.22421 -19.54841 -17.81765 -17.63610 -17.21979 -16.84422 -16.08547 -15.93419 -15.37331 -15.01963 -14.61696 -14.40677 -14.23193 -13.72360 -13.67834 -13.50924 -13.20287 -13.01870 -12.92666 -12.80520 -12.69555 -12.58480 -12.38668 -12.23242 -12.10357 -12.05372 -11.82179 -11.69160 -11.48529 -11.35725 -11.33960 -11.09223 -10.98407 -10.95851 -10.89056 -10.55463 -10.28681 -10.16833 -9.93234 -9.81912 -9.12224 -8.75472 -7.22525 -5.97942 -3.29314 1.15266 1.60757 2.22764 2.28196 2.74869 3.31444 3.36907 3.37696 3.58877 3.83131 4.01410 4.12782 4.22507 4.41622 4.44957 4.64752 4.79973 4.82772 4.91220 5.02382 5.07408 5.12650 5.20856 5.30034 5.31287 5.33590 5.39422 5.43525 5.45872 5.49376 5.54538 5.56519 5.61697 5.64976 5.67180 5.75250 5.87676 5.91416 5.97207 6.02018 6.05093 6.12864 6.22671 6.42924 6.70465 7.28147 7.51128 7.82417 8.18963 8.61000 9.31284 9.82002 10.16581 11.23894 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.003238 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.039246 B = 8644.989336 C = 9834.956306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.141 0.859 4 C 0.519 3.481 5 O -0.513 6.513 6 N -0.605 5.605 7 C 0.107 3.893 8 C -0.155 4.155 9 C 0.175 3.825 10 H 0.068 0.932 11 N -0.715 5.715 12 C -0.250 4.250 13 H 0.073 0.927 14 C -0.006 4.006 15 N -0.929 5.929 16 Si 0.909 3.091 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.081 3.919 21 N -0.292 5.292 22 N -0.062 5.062 23 N -0.086 5.086 24 N -0.301 5.301 25 C 0.194 3.806 26 C 0.013 3.987 27 C -0.152 4.152 28 C -0.131 4.131 29 C -0.153 4.153 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.385 0.615 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.087 0.913 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -4.928 10.902 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.014 3.986 3 H 0.159 0.841 4 C 0.303 3.697 5 O -0.388 6.388 6 N -0.339 5.339 7 C -0.015 4.015 8 C -0.196 4.196 9 C 0.063 3.937 10 H 0.086 0.914 11 N -0.356 5.356 12 C -0.380 4.380 13 H 0.091 0.909 14 C -0.203 4.203 15 N -0.577 5.577 16 Si 0.739 3.261 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.042 4.042 21 N -0.094 5.094 22 N -0.047 5.047 23 N -0.079 5.079 24 N -0.149 5.149 25 C -0.084 4.084 26 C 0.009 3.991 27 C -0.210 4.210 28 C -0.188 4.188 29 C -0.211 4.211 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.220 0.780 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.046 -6.865 11.360 14.586 hybrid contribution 0.266 1.469 -1.250 1.947 sum -5.780 -5.396 10.110 12.835 Atomic orbital electron populations 1.22116 0.89087 1.05619 1.04850 1.21954 0.98759 0.97030 0.80824 0.84148 1.19658 0.79483 0.87229 0.83334 1.90826 1.49270 1.14914 1.83750 1.48409 1.67253 1.09835 1.08412 1.22372 0.99676 0.97399 0.82079 1.23601 1.01216 0.94971 0.99804 1.21142 0.94928 0.87200 0.90426 0.91412 1.42314 1.60337 1.20046 1.12859 1.19139 1.27751 1.01672 0.89460 0.90940 1.24750 0.99970 0.97962 0.97577 1.69629 1.37499 1.21404 1.29119 0.86257 0.77545 0.79227 0.83054 1.21093 1.21598 1.21119 1.22629 1.01130 0.79364 1.01107 1.48132 1.34219 1.08921 1.18110 1.79008 1.19008 0.96248 1.10425 1.78627 1.07564 1.18067 1.03674 1.74969 1.19839 0.96567 1.23538 1.26121 0.95657 0.99735 0.86915 1.19298 0.96461 0.83966 0.99359 1.22115 0.96833 0.99516 1.02535 1.21746 0.99746 1.02575 0.94783 1.22120 0.99749 1.04152 0.95051 0.90078 0.88527 0.89714 0.90810 0.91294 0.90530 0.90151 0.78015 0.93202 0.90994 0.90804 0.91491 0.89690 0.92348 0.91422 0.91006 0.91458 0.92643 0.89452 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.39 37.16 0.35 -1.02 16 2 C 0.12 1.35 1.81 -69.08 -0.12 1.22 16 3 H 0.14 1.28 2.82 -51.93 -0.15 1.14 16 4 C 0.52 7.31 7.05 -10.99 -0.08 7.24 16 5 O -0.51 -9.29 16.05 5.55 0.09 -9.20 16 6 N -0.60 -7.88 3.33 -170.50 -0.57 -8.45 16 7 C 0.11 1.41 6.93 -2.52 -0.02 1.39 16 8 C -0.15 -2.28 6.77 -24.58 -0.17 -2.45 16 9 C 0.17 2.77 3.58 -66.09 -0.24 2.53 16 10 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 11 N -0.71 -15.05 5.25 -51.65 -0.27 -15.32 16 12 C -0.25 -6.09 9.98 -15.06 -0.15 -6.24 16 13 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 14 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 15 N -0.93 -25.34 13.06 55.49 0.72 -24.62 16 16 Si 0.91 20.51 29.55 -169.99 -5.02 15.49 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.08 1.01 5.89 -3.06 -0.02 0.99 16 21 N -0.29 -3.96 2.95 -52.93 -0.16 -4.12 16 22 N -0.06 -1.01 12.14 60.35 0.73 -0.28 16 23 N -0.09 -1.47 13.43 60.35 0.81 -0.66 16 24 N -0.30 -4.63 11.71 32.70 0.38 -4.25 16 25 C 0.19 2.50 6.40 -155.43 -1.00 1.50 16 26 C 0.01 0.12 0.75 -155.66 -0.12 0.00 16 27 C -0.15 -1.10 8.31 37.15 0.31 -0.79 16 28 C -0.13 -1.09 8.00 37.16 0.30 -0.80 16 29 C -0.15 -1.46 8.31 37.16 0.31 -1.15 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.64 7.59 -51.92 -0.39 0.25 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.03 7.99 -51.93 -0.42 0.61 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.39 8.62 7.51 -40.82 -0.31 8.31 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.07 0.73 7.59 -51.93 -0.39 0.34 16 40 H 0.07 0.92 7.07 -51.93 -0.37 0.55 16 41 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.39 5.58 -51.93 -0.29 0.10 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.56 5.19 -51.93 -0.27 0.29 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -32.04 390.76 -5.75 -37.79 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.62 Total: 5.54 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.74 Total: 2.19 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 1.66 Total: -57.70 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.04 -5.75 -37.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018948721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.884 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds