Wall clock time and date at job start Tue Mar 31 2020 19:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00330 * 2 1 4 4 H 1.48496 * 109.47363 * 270.00375 * 3 2 1 5 5 H 1.48504 * 109.46688 * 29.99985 * 3 2 1 6 6 H 1.48495 * 109.47216 * 149.99897 * 3 2 1 7 7 C 1.38818 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99923 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.47490 * 125.66043 * 0.02562 * 9 7 2 11 11 C 1.55028 * 104.90094 * 204.00960 * 10 9 7 12 12 C 1.54508 * 101.51940 * 323.64536 * 11 10 9 13 13 C 1.47193 * 125.66444 * 180.02562 * 9 7 2 14 14 C 1.52233 * 110.24640 * 276.20681 * 12 11 10 15 15 C 1.53167 * 109.64988 * 297.10800 * 14 12 11 16 16 C 1.53183 * 109.28375 * 299.83390 * 15 14 12 17 17 N 1.46934 * 108.92569 * 55.21029 * 16 15 14 18 18 C 1.34779 * 120.70152 * 125.82029 * 17 16 15 19 19 O 1.21282 * 120.00042 * 185.41634 * 18 17 16 20 20 C 1.50702 * 120.00205 * 5.41558 * 18 17 16 21 21 C 1.52996 * 109.47020 * 145.32274 * 20 18 17 22 22 C 1.53002 * 109.46744 * 180.02562 * 21 20 18 23 23 C 1.52997 * 109.46980 * 299.99792 * 22 21 20 24 24 O 1.42908 * 109.47229 * 299.99854 * 23 22 21 25 25 C 1.53000 * 109.47524 * 60.00372 * 23 22 21 26 26 C 1.53002 * 109.46688 * 299.99807 * 25 23 22 27 27 C 1.47087 * 118.59383 * 306.09090 * 17 16 15 28 28 H 0.96994 * 119.99517 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.35000 * 322.85922 * 10 9 7 30 30 H 1.08995 * 110.35201 * 85.04536 * 10 9 7 31 31 H 1.08993 * 111.01552 * 205.58372 * 11 10 9 32 32 H 1.09001 * 111.01754 * 81.70297 * 11 10 9 33 33 H 1.08998 * 109.90722 * 59.11689 * 13 9 7 34 34 H 1.09001 * 110.06548 * 297.94434 * 13 9 7 35 35 H 1.09006 * 109.44510 * 177.05527 * 14 12 11 36 36 H 1.09000 * 109.41594 * 57.14427 * 14 12 11 37 37 H 1.09009 * 109.50388 * 179.89187 * 15 14 12 38 38 H 1.08995 * 109.50520 * 59.78054 * 15 14 12 39 39 H 1.09003 * 109.55623 * 295.38047 * 16 15 14 40 40 H 1.09001 * 109.65148 * 175.10103 * 16 15 14 41 41 H 1.09001 * 109.46916 * 25.31928 * 20 18 17 42 42 H 1.09004 * 109.47139 * 299.99563 * 21 20 18 43 43 H 1.09001 * 109.47559 * 60.00048 * 21 20 18 44 44 H 1.09001 * 109.47156 * 59.99676 * 22 21 20 45 45 H 1.09002 * 109.47287 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.47000 * 180.02562 * 23 22 21 47 47 H 0.96697 * 113.99516 * 300.00283 * 24 23 22 48 48 H 1.08995 * 109.47368 * 180.02562 * 25 23 22 49 49 H 1.08994 * 109.46928 * 59.99847 * 25 23 22 50 50 H 1.09001 * 109.47156 * 299.99976 * 26 25 23 51 51 H 1.09002 * 109.47287 * 179.97438 * 26 25 23 52 52 H 1.08996 * 109.57632 * 172.02019 * 27 17 16 53 53 H 1.08999 * 109.57837 * 292.41771 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1421 -2.5336 -0.0005 11 6 -0.4038 -3.9347 0.6090 12 6 0.7809 -4.7458 0.0381 13 6 1.9321 -3.7293 -0.0005 14 6 0.4525 -5.2429 -1.3628 15 6 -0.7440 -6.1973 -1.3034 16 6 -0.3946 -7.3917 -0.4101 17 7 0.0309 -6.8945 0.9054 18 6 -0.5631 -7.3346 2.0324 19 8 -0.2708 -6.8450 3.1029 20 6 -1.5904 -8.4349 1.9625 21 6 -1.4819 -9.3140 3.2100 22 6 -2.5245 -10.4315 3.1387 23 6 -3.9246 -9.8188 3.0667 24 8 -4.1572 -9.0240 4.2313 25 6 -4.0332 -8.9397 1.8192 26 6 -2.9906 -7.8222 1.8905 27 6 1.1148 -5.9020 0.9660 28 1 -0.4849 0.8400 0.0004 29 1 -0.5997 -1.7602 0.6165 30 1 -0.5280 -2.4831 -1.0186 31 1 -1.3560 -4.3389 0.2654 32 1 -0.3657 -3.9007 1.6979 33 1 2.5644 -3.8507 0.8790 34 1 2.5234 -3.8723 -0.9050 35 1 1.3152 -5.7679 -1.7730 36 1 0.2078 -4.3936 -2.0005 37 1 -0.9783 -6.5502 -2.3078 38 1 -1.6066 -5.6742 -0.8906 39 1 0.4156 -7.9622 -0.8643 40 1 -1.2700 -8.0305 -0.2933 41 1 -1.4134 -9.0413 1.0742 42 1 -0.4845 -9.7508 3.2610 43 1 -1.6589 -8.7076 4.0984 44 1 -2.3471 -11.0377 2.2504 45 1 -2.4476 -11.0575 4.0277 46 1 -4.6674 -10.6149 3.0163 47 1 -4.1039 -9.5174 5.0612 48 1 -5.0305 -8.5029 1.7682 49 1 -3.8558 -9.5460 0.9310 50 1 -3.1680 -7.2159 2.7788 51 1 -3.0676 -7.1961 1.0016 52 1 1.2150 -5.5326 1.9866 53 1 2.0502 -6.3629 0.6488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054123727.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:50 Heat of formation + Delta-G solvation = -97.564247 kcal Electronic energy + Delta-G solvation = -31393.784725 eV Core-core repulsion = 27457.047815 eV Total energy + Delta-G solvation = -3936.736910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.85391 -40.40621 -39.13007 -37.29727 -35.93353 -34.75696 -33.10520 -32.05112 -31.74986 -30.93817 -30.31782 -27.47218 -26.65248 -25.48762 -23.86801 -23.61481 -23.29555 -22.02989 -20.98925 -20.11716 -19.42718 -18.66967 -18.32970 -17.49533 -17.21511 -16.94567 -16.50003 -16.19760 -16.13855 -15.65246 -15.52417 -15.03677 -14.79536 -14.72038 -14.39830 -14.22363 -14.16580 -13.89518 -13.67783 -13.52626 -13.29152 -13.13273 -13.10298 -12.92246 -12.90600 -12.78341 -12.40840 -12.28622 -12.18936 -12.09588 -11.91677 -11.88757 -11.71425 -11.48274 -11.46106 -11.30800 -11.13126 -11.06627 -10.76214 -10.75824 -10.39909 -9.55396 -8.90873 -7.79316 -5.23837 1.43176 1.46037 1.54704 1.63687 2.02540 2.47737 3.29519 3.39662 3.55124 3.62447 3.66322 3.73354 3.80933 3.88384 3.93490 4.11033 4.16458 4.22163 4.25057 4.27245 4.30997 4.45021 4.46742 4.52326 4.59202 4.60417 4.62925 4.72171 4.77484 4.81548 4.86332 4.88995 4.93383 4.97278 4.98426 5.09364 5.10620 5.15485 5.20342 5.25758 5.29290 5.34560 5.41258 5.47801 5.50458 5.51117 5.58287 5.61976 5.79036 6.27211 6.49746 6.99796 7.07968 7.23296 7.75835 8.41042 9.22808 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002738 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.919126 B =10223.139472 C =10570.033965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.983 3.017 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.625 5.625 10 C 0.163 3.837 11 C -0.112 4.112 12 C -0.068 4.068 13 C 0.143 3.857 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.103 3.897 17 N -0.605 5.605 18 C 0.510 3.490 19 O -0.594 6.594 20 C -0.093 4.093 21 C -0.098 4.098 22 C -0.141 4.141 23 C 0.097 3.903 24 O -0.589 6.589 25 C -0.108 4.108 26 C -0.102 4.102 27 C 0.136 3.864 28 H 0.246 0.754 29 H 0.061 0.939 30 H -0.008 1.008 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.017 0.983 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.388 0.612 48 H 0.068 0.932 49 H 0.109 0.891 50 H 0.038 0.962 51 H 0.068 0.932 52 H 0.056 0.944 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -28.808 -1.304 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.038 3.962 11 C -0.150 4.150 12 C -0.070 4.070 13 C 0.018 3.982 14 C -0.134 4.134 15 C -0.168 4.168 16 C -0.018 4.018 17 N -0.337 5.337 18 C 0.300 3.700 19 O -0.474 6.474 20 C -0.114 4.114 21 C -0.136 4.136 22 C -0.178 4.178 23 C 0.039 3.961 24 O -0.397 6.397 25 C -0.145 4.145 26 C -0.140 4.140 27 C 0.013 3.987 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.237 0.763 48 H 0.086 0.914 49 H 0.127 0.873 50 H 0.057 0.943 51 H 0.087 0.913 52 H 0.074 0.926 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.358 -27.892 -1.200 28.871 hybrid contribution 0.660 1.558 0.796 1.870 sum -6.697 -26.334 -0.404 27.175 Atomic orbital electron populations 1.70096 1.06316 1.24950 1.58680 1.25685 0.96665 1.01132 1.02762 0.85012 0.77511 0.78842 0.77570 1.20978 1.22062 1.19490 1.19481 0.91028 0.83818 1.42490 0.90113 1.44828 1.02602 1.00917 1.86754 1.21613 0.84172 0.94157 0.96219 1.22755 0.98058 0.96360 0.97847 1.21161 0.94909 0.93796 0.97099 1.21360 0.94474 0.84609 0.97795 1.21316 0.99641 0.98927 0.93481 1.21986 0.97285 0.96001 1.01536 1.22118 1.02451 0.96274 0.80951 1.48277 1.36034 1.41871 1.07480 1.21450 0.81745 0.83941 0.82879 1.90673 1.65467 1.60340 1.30920 1.21407 0.93214 0.94496 1.02309 1.21272 0.99455 0.96589 0.96302 1.22227 0.94200 0.96992 1.04419 1.21981 0.95591 0.92794 0.85744 1.86554 1.94371 1.41380 1.17418 1.21610 0.98574 0.96761 0.97586 1.21329 0.92439 0.98619 1.01584 1.21164 0.90094 0.88434 0.99033 0.94423 0.92109 0.98968 0.90625 0.95061 0.96465 0.94817 0.89908 0.93586 0.87463 0.92658 0.88650 0.86807 0.85628 0.92145 0.93511 0.88472 0.90267 0.90527 0.76321 0.91372 0.87270 0.94295 0.91289 0.92551 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.39 10.09 21.65 0.22 -59.17 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 3 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.24 -14.08 10.28 84.03 0.86 -13.22 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.62 -34.13 3.40 -692.50 -2.36 -36.48 16 10 C 0.16 8.66 5.57 86.88 0.48 9.14 16 11 C -0.11 -4.72 5.72 31.80 0.18 -4.54 16 12 C -0.07 -2.39 0.55 -52.05 -0.03 -2.42 16 13 C 0.14 6.20 6.43 86.46 0.56 6.75 16 14 C -0.10 -2.64 4.55 30.40 0.14 -2.50 16 15 C -0.13 -2.51 5.89 30.71 0.18 -2.33 16 16 C 0.10 1.60 6.15 86.36 0.53 2.13 16 17 N -0.61 -15.23 2.83 -820.82 -2.32 -17.55 16 18 C 0.51 14.52 6.69 87.66 0.59 15.10 16 19 O -0.59 -23.47 15.70 -3.04 -0.05 -23.52 16 20 C -0.09 -1.74 1.72 -11.54 -0.02 -1.76 16 21 C -0.10 -1.80 4.71 30.59 0.14 -1.66 16 22 C -0.14 -1.44 5.64 30.59 0.17 -1.26 16 23 C 0.10 1.15 3.77 30.59 0.12 1.27 16 24 O -0.59 -10.33 11.97 -148.98 -1.78 -12.12 16 25 C -0.11 -1.36 5.66 30.60 0.17 -1.19 16 26 C -0.10 -1.97 4.96 30.60 0.15 -1.82 16 27 C 0.14 4.24 4.96 85.93 0.43 4.66 16 28 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.06 3.73 5.88 -2.38 -0.01 3.72 16 30 H -0.01 -0.42 7.76 -2.39 -0.02 -0.44 16 31 H 0.08 2.87 5.99 -2.39 -0.01 2.86 16 32 H 0.03 1.47 7.89 -2.39 -0.02 1.45 16 33 H 0.02 0.76 7.80 -2.39 -0.02 0.75 16 34 H 0.03 1.39 7.83 -2.39 -0.02 1.37 16 35 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.05 1.53 7.49 -2.39 -0.02 1.51 16 37 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.05 1.28 6.22 -2.39 -0.01 1.26 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 1.11 5.44 -2.39 -0.01 1.09 16 41 H 0.13 1.36 6.18 -2.39 -0.01 1.35 16 42 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.05 1.20 7.40 -2.39 -0.02 1.18 16 44 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.39 3.85 9.08 -74.06 -0.67 3.18 16 48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.04 1.08 7.68 -2.39 -0.02 1.07 16 51 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 52 H 0.06 2.18 6.84 -2.39 -0.02 2.17 16 53 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -82.22 388.71 1.08 -81.14 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.23 Total: 15.46 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 5.12 Total: 2.66 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -4.46 Total: -113.20 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.83 Total: -35.64 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -82.22 1.08 -81.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054123727.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.423 kcal (2) G-P(sol) polarization free energy of solvation -82.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds