Wall clock time and date at job start Tue Mar 31 2020 21:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00124 * 2 1 4 4 C 1.53006 * 109.47180 * 124.08044 * 3 2 1 5 5 C 1.50698 * 109.46608 * 61.95471 * 4 3 2 6 6 O 1.21277 * 120.00434 * 246.38766 * 5 4 3 7 7 N 1.34777 * 119.99981 * 66.39347 * 5 4 3 8 8 C 1.46502 * 120.00301 * 175.11647 * 7 5 4 9 9 H 1.09001 * 109.45871 * 35.02415 * 8 7 5 10 10 C 1.53041 * 109.46198 * 275.06897 * 8 7 5 11 11 C 1.53194 * 109.31405 * 301.34401 * 10 8 7 12 12 N 1.46927 * 108.77300 * 305.36324 * 11 10 8 13 13 C 1.36931 * 120.63065 * 233.62706 * 12 11 10 14 14 H 1.08000 * 119.99972 * 29.31398 * 13 12 11 15 15 C 1.38817 * 120.00239 * 209.31127 * 13 12 11 16 16 N 1.31614 * 119.99493 * 14.36631 * 15 13 12 17 17 Si 1.86800 * 119.99859 * 194.36988 * 15 13 12 18 18 H 1.48499 * 109.47399 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47232 * 120.00058 * 17 15 13 20 20 H 1.48501 * 109.46960 * 239.99627 * 17 15 13 21 21 C 1.46929 * 118.73733 * 53.60846 * 12 11 10 22 22 C 1.53035 * 109.46026 * 154.99897 * 8 7 5 23 23 H 1.09003 * 109.49952 * 178.63603 * 22 8 7 24 24 O 1.42893 * 109.50356 * 298.70706 * 22 8 7 25 25 C 1.52994 * 109.46980 * 301.96030 * 4 3 2 26 26 C 1.53001 * 109.47149 * 179.97438 * 25 4 3 27 27 C 1.53003 * 109.46998 * 59.99948 * 26 25 4 28 28 C 1.53004 * 109.47148 * 300.00012 * 27 26 25 29 29 C 1.52989 * 109.47452 * 181.95698 * 4 3 2 30 30 H 1.07998 * 120.00235 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99682 * 359.72099 * 1 2 3 32 32 H 1.08002 * 119.99404 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47654 * 244.08435 * 3 2 1 34 34 H 1.09000 * 109.47194 * 4.08636 * 3 2 1 35 35 H 0.97004 * 120.00285 * 355.11858 * 7 5 4 36 36 H 1.09003 * 109.49476 * 61.29347 * 10 8 7 37 37 H 1.08999 * 109.49731 * 181.38662 * 10 8 7 38 38 H 1.09000 * 109.58843 * 185.57653 * 11 10 8 39 39 H 1.09004 * 109.69974 * 65.22069 * 11 10 8 40 40 H 0.97008 * 119.99829 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.58248 * 186.60186 * 21 12 11 42 42 H 1.09002 * 109.70434 * 66.24726 * 21 12 11 43 43 H 0.96696 * 114.00756 * 180.02562 * 24 22 8 44 44 H 1.09001 * 109.47250 * 299.99579 * 25 4 3 45 45 H 1.09001 * 109.47349 * 59.99765 * 25 4 3 46 46 H 1.09001 * 109.47099 * 300.00159 * 26 25 4 47 47 H 1.08997 * 109.47134 * 180.02562 * 26 25 4 48 48 H 1.08998 * 109.47173 * 179.97438 * 27 26 25 49 49 H 1.09001 * 109.47024 * 60.00165 * 27 26 25 50 50 H 1.08994 * 109.46788 * 300.00447 * 28 27 26 51 51 H 1.08994 * 109.47342 * 180.02562 * 28 27 26 52 52 H 1.09007 * 109.47218 * 300.00124 * 29 4 3 53 53 H 1.08997 * 109.47133 * 59.99830 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0186 1.3425 1.1948 5 6 4.0246 0.2277 1.0687 6 8 4.0212 -0.6854 1.8668 7 7 4.9284 0.2454 0.0690 8 6 5.9733 -0.7797 0.0078 9 1 5.5733 -1.7278 0.3672 10 6 7.1530 -0.3583 0.8868 11 6 7.6909 0.9911 0.4003 12 7 8.0116 0.8846 -1.0296 13 6 9.2531 1.2284 -1.4936 14 1 10.1168 1.1238 -0.8537 15 6 9.4017 1.7115 -2.7865 16 7 8.3464 2.1061 -3.4668 17 14 11.0994 1.8013 -3.5606 18 1 12.1109 1.3020 -2.5949 19 1 11.1293 0.9640 -4.7867 20 1 11.4076 3.2099 -3.9157 21 6 6.9749 0.4017 -1.9520 22 6 6.4451 -0.9410 -1.4391 23 1 7.2394 -1.6862 -1.4818 24 8 5.3499 -1.3641 -2.2536 25 6 2.2226 1.1671 2.4896 26 6 3.1777 1.2040 3.6843 27 6 3.9076 2.5484 3.7125 28 6 4.7036 2.7238 2.4176 29 6 3.7480 2.6871 1.2227 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9354 0.0046 32 1 1.8499 -0.9354 -0.0004 33 1 2.6342 1.3952 -0.9243 34 1 1.3575 2.1322 0.0732 35 1 4.8870 0.9369 -0.6101 36 1 6.8214 -0.2662 1.9211 37 1 7.9410 -1.1087 0.8224 38 1 8.5910 1.2485 0.9585 39 1 6.9356 1.7629 0.5490 40 1 8.4502 2.4440 -4.3702 41 1 7.4027 0.2702 -2.9459 42 1 6.1589 1.1230 -1.9979 43 1 5.5771 -1.4871 -3.1854 44 1 1.4949 1.9735 2.5808 45 1 1.7030 0.2092 2.4697 46 1 3.9052 0.3975 3.5929 47 1 2.6107 1.0786 4.6067 48 1 4.5877 2.5749 4.5638 49 1 3.1801 3.3549 3.8038 50 1 5.4310 1.9172 2.3262 51 1 5.2239 3.6813 2.4378 52 1 4.3151 2.8120 0.3002 53 1 3.0203 3.4934 1.3138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100122496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:25 Heat of formation + Delta-G solvation = -85.503454 kcal Electronic energy + Delta-G solvation = -32518.397749 eV Core-core repulsion = 28582.183834 eV Total energy + Delta-G solvation = -3936.213915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00836 -40.02836 -38.05090 -36.86026 -35.95215 -35.63736 -33.75513 -32.35964 -31.50220 -31.06588 -30.35912 -27.22145 -27.06880 -24.58464 -23.77238 -23.59277 -23.36791 -21.98053 -20.57772 -20.44372 -20.07772 -18.80142 -18.08960 -17.50589 -17.15401 -16.77174 -16.40390 -16.00910 -15.88275 -15.70523 -15.44322 -15.24821 -14.98797 -14.92778 -14.66950 -14.34459 -14.09990 -13.82398 -13.56549 -13.44540 -13.25102 -13.10382 -12.97026 -12.88976 -12.82620 -12.69997 -12.67183 -12.52714 -12.13507 -12.01004 -11.97096 -11.88693 -11.82321 -11.48017 -11.25477 -11.09056 -10.95350 -10.89277 -10.59140 -10.37709 -10.14722 -9.88108 -8.67481 -7.88967 -5.36757 1.41006 1.46273 1.50217 1.58887 1.81933 2.31582 2.49818 3.14381 3.28476 3.60754 3.64215 3.67798 3.81663 3.93475 4.08162 4.13435 4.16906 4.21891 4.26594 4.34018 4.36038 4.42994 4.45870 4.48714 4.59535 4.64884 4.72098 4.75876 4.78009 4.91128 4.92392 4.97378 4.97484 5.08207 5.08832 5.14339 5.15598 5.17227 5.28457 5.30799 5.36571 5.41453 5.45233 5.59113 5.60949 5.65870 5.70834 5.77059 5.89101 6.36520 6.68246 6.81725 7.13586 7.38866 7.80630 8.33041 9.16446 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.003888 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.771910 B = 7200.278451 C = 7841.535925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 C -0.079 4.079 4 C -0.064 4.064 5 C 0.530 3.470 6 O -0.577 6.577 7 N -0.703 5.703 8 C 0.169 3.831 9 H 0.068 0.932 10 C -0.130 4.130 11 C 0.150 3.850 12 N -0.600 5.600 13 C -0.264 4.264 14 H 0.065 0.935 15 C -0.040 4.040 16 N -0.928 5.928 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.293 1.293 21 C 0.162 3.838 22 C 0.083 3.917 23 H 0.057 0.943 24 O -0.573 6.573 25 C -0.084 4.084 26 C -0.130 4.130 27 C -0.111 4.111 28 C -0.124 4.124 29 C -0.105 4.105 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.251 0.749 41 H 0.064 0.936 42 H 0.011 0.989 43 H 0.390 0.610 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.038 0.962 51 H 0.071 0.929 52 H 0.057 0.943 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 0.251 8.492 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C -0.117 4.117 4 C -0.067 4.067 5 C 0.319 3.681 6 O -0.458 6.458 7 N -0.353 5.353 8 C 0.064 3.936 9 H 0.086 0.914 10 C -0.170 4.170 11 C 0.024 3.976 12 N -0.325 5.325 13 C -0.394 4.394 14 H 0.083 0.917 15 C -0.236 4.236 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.220 1.220 21 C 0.035 3.965 22 C 0.022 3.978 23 H 0.075 0.925 24 O -0.380 6.380 25 C -0.122 4.122 26 C -0.167 4.167 27 C -0.149 4.149 28 C -0.161 4.161 29 C -0.143 4.143 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.029 0.971 43 H 0.239 0.761 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.098 0.902 50 H 0.057 0.943 51 H 0.089 0.911 52 H 0.076 0.924 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.873 -0.302 9.473 16.801 hybrid contribution 1.583 0.037 -1.632 2.274 sum -12.291 -0.265 7.840 14.581 Atomic orbital electron populations 1.23953 0.95022 1.02840 0.99886 1.22774 0.96734 0.97651 1.00971 1.20840 0.97930 0.96648 0.96240 1.20843 0.94161 0.93577 0.98079 1.20840 0.80914 0.86829 0.79555 1.90579 1.73725 1.38043 1.43419 1.45964 1.29770 1.30985 1.28591 1.20619 0.87838 0.91530 0.93661 0.91404 1.22234 0.96935 0.99405 0.98440 1.20951 0.97651 0.94127 0.84849 1.44109 1.10884 1.75142 1.02351 1.19493 0.85477 1.36367 0.98100 0.91743 1.25713 1.00027 0.98373 0.99476 1.70117 1.29563 1.46013 1.11684 0.85285 0.80588 0.76808 0.78198 1.19480 1.21643 1.22028 1.21147 0.89985 0.90652 0.94669 1.22614 0.87881 0.97060 0.90271 0.92474 1.86399 1.37025 1.90168 1.24359 1.21327 0.97099 1.02135 0.91602 1.21682 0.99033 0.97934 0.98057 1.21506 0.99136 0.97558 0.96673 1.21573 0.97780 1.01506 0.95268 1.21630 0.98824 0.95338 0.98485 0.88207 0.86535 0.90397 0.91241 0.87789 0.76261 0.91390 0.91113 0.92904 0.95880 0.93970 0.91790 0.97115 0.76108 0.89324 0.92661 0.92831 0.91428 0.92181 0.90241 0.94321 0.91057 0.92436 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 14.32 67.78 0.97 -2.41 16 2 C -0.16 -3.86 7.67 25.64 0.20 -3.66 16 3 C -0.08 -1.71 4.70 29.85 0.14 -1.57 16 4 C -0.06 -1.53 0.42 -52.93 -0.02 -1.55 16 5 C 0.53 16.73 3.92 87.66 0.34 17.08 16 6 O -0.58 -21.60 13.55 -3.02 -0.04 -21.64 16 7 N -0.70 -23.17 3.95 -442.41 -1.75 -24.92 16 8 C 0.17 6.02 2.51 45.02 0.11 6.14 16 9 H 0.07 2.58 7.51 -2.39 -0.02 2.56 16 10 C -0.13 -4.60 5.77 30.67 0.18 -4.42 16 11 C 0.15 5.97 6.25 86.36 0.54 6.51 16 12 N -0.60 -27.99 2.99 -699.08 -2.09 -30.08 16 13 C -0.26 -13.72 9.59 84.04 0.81 -12.92 16 14 H 0.06 3.32 7.87 -2.91 -0.02 3.30 16 15 C -0.04 -2.09 4.97 84.86 0.42 -1.66 16 16 N -0.93 -50.96 11.12 21.65 0.24 -50.72 16 17 Si 0.96 42.75 29.58 68.60 2.03 44.78 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 21 C 0.16 7.09 4.61 86.36 0.40 7.49 16 22 C 0.08 3.05 3.36 30.67 0.10 3.15 16 23 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 24 O -0.57 -19.28 13.21 -148.98 -1.97 -21.25 16 25 C -0.08 -1.88 4.08 30.59 0.12 -1.76 16 26 C -0.13 -3.07 5.63 30.60 0.17 -2.90 16 27 C -0.11 -2.30 5.92 30.60 0.18 -2.12 16 28 C -0.12 -2.96 5.70 30.61 0.17 -2.78 16 29 C -0.11 -2.34 4.58 30.61 0.14 -2.20 16 30 H 0.10 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.12 1.68 7.84 -2.91 -0.02 1.66 16 32 H 0.08 2.31 7.69 -2.91 -0.02 2.29 16 33 H 0.07 1.63 7.84 -2.39 -0.02 1.62 16 34 H 0.10 1.68 7.79 -2.39 -0.02 1.66 16 35 H 0.40 13.53 5.76 -92.71 -0.53 12.99 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.05 2.10 7.93 -2.39 -0.02 2.09 16 39 H 0.02 0.93 7.50 -2.39 -0.02 0.91 16 40 H 0.25 13.41 8.31 -92.70 -0.77 12.64 16 41 H 0.06 3.18 6.06 -2.39 -0.01 3.16 16 42 H 0.01 0.50 6.64 -2.39 -0.02 0.49 16 43 H 0.39 10.49 9.08 -74.06 -0.67 9.81 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.05 1.41 7.05 -2.39 -0.02 1.39 16 46 H 0.05 1.64 5.75 -2.39 -0.01 1.63 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.04 1.14 6.97 -2.39 -0.02 1.12 16 51 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.06 1.44 7.33 -2.38 -0.02 1.42 16 53 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -61.95 395.99 1.09 -60.86 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.31 Total: 42.56 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 4.98 Total: 0.42 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -3.60 Total: -105.72 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -2.01 Total: -42.89 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -61.95 1.09 -60.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100122496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.647 kcal (2) G-P(sol) polarization free energy of solvation -61.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds