Wall clock time and date at job start Tue Mar 31 2020 21:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99842 * 2 1 4 4 C 1.52999 * 109.47151 * 125.00261 * 3 2 1 5 5 C 1.50704 * 109.47090 * 300.00085 * 4 3 2 6 6 O 1.21280 * 119.99937 * 239.99817 * 5 4 3 7 7 N 1.34769 * 119.99877 * 59.99945 * 5 4 3 8 8 C 1.46504 * 120.00029 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.45810 * 324.97008 * 8 7 5 10 10 C 1.53037 * 109.46026 * 84.93087 * 8 7 5 11 11 C 1.53198 * 109.31124 * 181.38924 * 10 8 7 12 12 N 1.46924 * 108.77285 * 305.36331 * 11 10 8 13 13 C 1.36937 * 120.63097 * 233.62955 * 12 11 10 14 14 H 1.07999 * 120.00134 * 152.59677 * 13 12 11 15 15 C 1.38810 * 120.00051 * 332.60670 * 13 12 11 16 16 N 1.31620 * 120.00446 * 159.35861 * 15 13 12 17 17 Si 1.86803 * 119.99938 * 339.35855 * 15 13 12 18 18 H 1.48494 * 109.47624 * 92.90025 * 17 15 13 19 19 H 1.48501 * 109.47137 * 212.90555 * 17 15 13 20 20 H 1.48502 * 109.46956 * 332.90173 * 17 15 13 21 21 C 1.46928 * 118.73842 * 53.60828 * 12 11 10 22 22 C 1.53042 * 109.46036 * 205.00083 * 8 7 5 23 23 H 1.09006 * 109.49575 * 298.56306 * 22 8 7 24 24 O 1.42898 * 109.50044 * 58.62676 * 22 8 7 25 25 C 1.53003 * 109.47176 * 59.99980 * 4 3 2 26 26 C 1.52999 * 109.47176 * 180.02562 * 25 4 3 27 27 C 1.52994 * 109.47012 * 300.00070 * 26 25 4 28 28 C 1.53001 * 109.47450 * 60.00442 * 27 26 25 29 29 C 1.53003 * 109.47151 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.00365 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99857 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99906 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47595 * 5.00226 * 3 2 1 34 34 H 1.09003 * 109.47153 * 245.00351 * 3 2 1 35 35 H 0.97005 * 120.00639 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.49656 * 301.33536 * 10 8 7 37 37 H 1.08997 * 109.50115 * 61.43340 * 10 8 7 38 38 H 1.08994 * 109.58670 * 185.57678 * 11 10 8 39 39 H 1.08998 * 109.70285 * 65.21641 * 11 10 8 40 40 H 0.97003 * 120.00012 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.58585 * 186.60196 * 21 12 11 42 42 H 1.08996 * 109.58500 * 66.18670 * 21 12 11 43 43 H 0.96694 * 114.00187 * 179.97438 * 24 22 8 44 44 H 1.09003 * 109.46989 * 59.99995 * 25 4 3 45 45 H 1.09002 * 109.47118 * 300.00683 * 25 4 3 46 46 H 1.09005 * 109.46841 * 179.97438 * 26 25 4 47 47 H 1.09003 * 109.47166 * 60.00103 * 26 25 4 48 48 H 1.09001 * 109.46821 * 179.97438 * 27 26 25 49 49 H 1.08997 * 109.47603 * 299.99479 * 27 26 25 50 50 H 1.08989 * 109.47277 * 59.99591 * 28 27 26 51 51 H 1.08997 * 109.47080 * 180.02562 * 28 27 26 52 52 H 1.08994 * 109.47194 * 59.99714 * 29 4 3 53 53 H 1.08996 * 109.46995 * 299.99652 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.2638 1.1982 2.4693 6 8 2.3205 2.0755 3.3048 7 7 1.5113 0.1027 2.6925 8 6 0.7611 -0.0282 3.9441 9 1 1.3321 0.4187 4.7580 10 6 -0.5834 0.6904 3.8102 11 6 -1.3500 0.5811 5.1321 12 7 -1.4579 -0.8371 5.5002 13 6 -2.6777 -1.3962 5.7735 14 1 -2.8367 -2.4518 5.6098 15 6 -3.7098 -0.6062 6.2607 16 7 -4.9576 -1.0088 6.1452 17 14 -3.3279 1.0284 7.0803 18 1 -3.3886 2.1149 6.0699 19 1 -4.3242 1.2906 8.1498 20 1 -1.9671 0.9790 7.6729 21 6 -0.2321 -1.6443 5.5692 22 6 0.5220 -1.5100 4.2426 23 1 -0.0703 -1.9516 3.4411 24 8 1.7773 -2.1864 4.3363 25 6 4.0245 0.1729 1.0558 26 6 4.9957 0.2005 2.2377 27 6 5.7607 1.5255 2.2383 28 6 4.7712 2.6857 2.3642 29 6 3.7995 2.6584 1.1819 30 1 -0.5400 0.9352 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 1.4656 -0.5988 2.0241 36 1 -0.4126 1.7408 3.5746 37 1 -1.1652 0.2282 3.0129 38 1 -2.3473 1.0043 5.0121 39 1 -0.8151 1.1217 5.9129 40 1 -5.6788 -0.4568 6.4861 41 1 -0.4918 -2.6894 5.7378 42 1 0.3961 -1.2857 6.3846 43 1 1.7016 -3.1317 4.5247 44 1 4.5823 0.2705 0.1244 45 1 3.4795 -0.7711 1.0557 46 1 5.7004 -0.6263 2.1483 47 1 4.4376 0.1027 3.1689 48 1 6.4522 1.5453 3.0806 49 1 6.3188 1.6233 1.3072 50 1 4.2132 2.5879 3.2953 51 1 5.3162 3.6296 2.3642 52 1 3.0943 3.4846 1.2717 53 1 4.3572 2.7564 0.2506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100122497.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:30 Heat of formation + Delta-G solvation = -80.488430 kcal Electronic energy + Delta-G solvation = -32213.836780 eV Core-core repulsion = 28277.840333 eV Total energy + Delta-G solvation = -3935.996447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.03118 -40.11548 -38.13213 -37.13936 -36.49370 -35.34407 -33.94041 -32.36028 -31.94858 -31.37885 -30.62208 -27.06115 -26.98520 -24.50955 -24.29131 -23.77621 -23.04787 -21.71648 -21.50671 -20.48650 -20.18385 -18.94279 -18.07006 -17.67940 -17.39155 -16.93505 -16.54544 -16.21898 -16.06778 -15.68515 -15.43705 -15.22012 -15.02807 -14.76070 -14.59197 -14.52514 -14.45537 -14.04334 -13.90280 -13.75873 -13.45515 -13.23324 -13.15298 -12.98422 -12.91407 -12.88118 -12.67357 -12.37671 -12.17611 -12.02013 -11.96140 -11.88107 -11.65487 -11.58969 -11.42076 -11.18124 -11.05285 -10.87949 -10.76171 -10.40767 -10.18543 -9.83279 -9.03341 -8.21560 -5.54424 1.25751 1.34478 1.37480 1.45133 1.78829 2.25839 2.36301 2.89900 3.10464 3.34533 3.57701 3.67118 3.78152 3.82053 3.98993 4.04831 4.08166 4.11788 4.22513 4.24705 4.28706 4.30315 4.40048 4.50032 4.53935 4.58326 4.66327 4.69620 4.74804 4.76526 4.80304 4.83876 4.88340 4.96004 5.00234 5.00608 5.08250 5.10049 5.15988 5.23811 5.28037 5.33999 5.39713 5.43011 5.52682 5.71613 5.74028 5.79567 5.86583 6.07913 6.68210 6.77387 6.90312 7.40307 7.53936 7.94452 8.97525 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.003605 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.539995 B = 7764.371231 C = 7840.103726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.171 4.171 3 C -0.079 4.079 4 C -0.064 4.064 5 C 0.521 3.479 6 O -0.582 6.582 7 N -0.700 5.700 8 C 0.168 3.832 9 H 0.059 0.941 10 C -0.124 4.124 11 C 0.124 3.876 12 N -0.612 5.612 13 C -0.248 4.248 14 H 0.066 0.934 15 C -0.023 4.023 16 N -0.949 5.949 17 Si 0.932 3.068 18 H -0.279 1.279 19 H -0.307 1.307 20 H -0.269 1.269 21 C 0.119 3.881 22 C 0.101 3.899 23 H 0.068 0.932 24 O -0.566 6.566 25 C -0.101 4.101 26 C -0.123 4.123 27 C -0.114 4.114 28 C -0.136 4.136 29 C -0.090 4.090 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.408 0.592 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.396 0.604 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.030 0.970 48 H 0.054 0.946 49 H 0.082 0.918 50 H 0.054 0.946 51 H 0.062 0.938 52 H 0.049 0.951 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.623 1.037 -16.547 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.189 4.189 3 C -0.116 4.116 4 C -0.067 4.067 5 C 0.309 3.691 6 O -0.462 6.462 7 N -0.353 5.353 8 C 0.062 3.938 9 H 0.077 0.923 10 C -0.164 4.164 11 C -0.002 4.002 12 N -0.337 5.337 13 C -0.378 4.378 14 H 0.084 0.916 15 C -0.219 4.219 16 N -0.594 5.594 17 Si 0.762 3.238 18 H -0.206 1.206 19 H -0.236 1.236 20 H -0.194 1.194 21 C -0.006 4.006 22 C 0.040 3.960 23 H 0.086 0.914 24 O -0.373 6.373 25 C -0.139 4.139 26 C -0.160 4.160 27 C -0.151 4.151 28 C -0.174 4.174 29 C -0.128 4.128 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.150 0.850 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.248 0.752 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.246 0.754 44 H 0.121 0.879 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.100 0.900 50 H 0.073 0.927 51 H 0.081 0.919 52 H 0.068 0.932 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 21.754 2.233 -16.042 27.121 hybrid contribution -1.083 0.105 1.089 1.539 sum 20.671 2.338 -14.953 25.619 Atomic orbital electron populations 1.24015 0.96427 1.02193 0.99704 1.23080 0.95871 0.99100 1.00804 1.20816 0.97332 0.95704 0.97783 1.20884 0.95548 0.99034 0.91205 1.21109 0.78237 0.80828 0.88928 1.90607 1.65161 1.41863 1.48608 1.46181 1.47303 1.22199 1.19605 1.20567 0.91526 0.94276 0.87393 0.92274 1.22185 0.95554 1.00226 0.98426 1.21325 0.98576 0.85591 0.94701 1.44380 1.03037 1.06495 1.79825 1.18888 0.87124 0.95145 1.36595 0.91627 1.25747 0.95041 1.00992 1.00093 1.69923 0.99099 1.40732 1.49692 0.86144 0.77156 0.81818 0.78673 1.20564 1.23570 1.19410 1.21747 0.86843 0.96594 0.95463 1.22260 0.84760 0.91376 0.97589 0.91438 1.86459 1.28794 1.27424 1.94661 1.21671 0.96050 0.96182 0.99983 1.21552 0.98503 0.98292 0.97689 1.21515 0.97308 0.93938 1.02340 1.21760 0.97381 0.98664 0.99560 1.21384 0.97512 0.94400 0.99522 0.89501 0.87760 0.85028 0.92223 0.87037 0.75176 0.91791 0.90893 0.92539 0.95868 0.92813 0.90353 0.95183 0.75405 0.87946 0.90729 0.90287 0.95131 0.92732 0.89978 0.92714 0.91946 0.93217 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 13.91 67.78 0.94 -2.41 16 2 C -0.17 -2.57 5.81 25.65 0.15 -2.42 16 3 C -0.08 -1.20 4.72 29.85 0.14 -1.05 16 4 C -0.06 -1.19 0.50 -52.92 -0.03 -1.22 16 5 C 0.52 14.51 4.89 87.66 0.43 14.94 16 6 O -0.58 -21.29 13.32 -3.03 -0.04 -21.33 16 7 N -0.70 -18.66 4.14 -442.40 -1.83 -20.50 16 8 C 0.17 5.55 2.12 45.02 0.10 5.64 16 9 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 10 C -0.12 -4.54 5.65 30.67 0.17 -4.36 16 11 C 0.12 5.49 4.21 86.36 0.36 5.85 16 12 N -0.61 -28.27 2.77 -699.11 -1.94 -30.21 16 13 C -0.25 -13.64 10.03 84.03 0.84 -12.80 16 14 H 0.07 3.83 8.06 -2.91 -0.02 3.81 16 15 C -0.02 -1.33 5.23 84.86 0.44 -0.89 16 16 N -0.95 -58.54 13.97 21.65 0.30 -58.24 16 17 Si 0.93 47.28 24.34 68.60 1.67 48.95 16 18 H -0.28 -13.59 6.62 99.48 0.66 -12.93 16 19 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 20 H -0.27 -13.46 6.64 99.48 0.66 -12.80 16 21 C 0.12 4.42 6.14 86.36 0.53 4.95 16 22 C 0.10 3.05 3.14 30.67 0.10 3.15 16 23 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 24 O -0.57 -14.10 13.16 -148.98 -1.96 -16.06 16 25 C -0.10 -1.46 4.38 30.60 0.13 -1.33 16 26 C -0.12 -2.22 5.70 30.59 0.17 -2.04 16 27 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 28 C -0.14 -2.97 5.63 30.61 0.17 -2.80 16 29 C -0.09 -1.71 4.38 30.62 0.13 -1.58 16 30 H 0.09 1.74 7.84 -2.91 -0.02 1.71 16 31 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.13 1.50 6.67 -2.91 -0.02 1.48 16 33 H 0.06 1.08 7.79 -2.39 -0.02 1.06 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 9.00 5.02 -92.70 -0.47 8.54 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.06 2.74 4.50 -2.39 -0.01 2.72 16 39 H 0.02 1.06 7.07 -2.39 -0.02 1.04 16 40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.08 2.73 7.93 -2.38 -0.02 2.71 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.40 6.38 9.08 -74.06 -0.67 5.71 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 1.00 5.97 -2.39 -0.01 0.98 16 46 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.03 0.77 7.22 -2.39 -0.02 0.75 16 48 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.05 1.65 5.51 -2.39 -0.01 1.64 16 51 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 53 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -71.53 388.70 0.85 -70.69 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.33 Total: 26.84 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.98 Total: -0.15 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -3.47 Total: -108.94 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -2.00 Total: -37.39 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.67 Total: 48.95 kcal Total: -71.53 0.85 -70.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100122497.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.801 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds