Wall clock time and date at job start Tue Mar 31 2020 21:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99898 * 2 1 4 4 C 1.52989 * 109.47366 * 127.89277 * 3 2 1 5 5 C 1.50705 * 109.47246 * 293.85262 * 4 3 2 6 6 O 1.21286 * 119.99481 * 247.08520 * 5 4 3 7 7 N 1.34773 * 120.00196 * 67.08131 * 5 4 3 8 8 C 1.46499 * 119.99905 * 181.51987 * 7 5 4 9 9 H 1.08995 * 109.46298 * 312.63073 * 8 7 5 10 10 C 1.53033 * 109.46038 * 72.61094 * 8 7 5 11 11 C 1.53194 * 109.31700 * 58.65027 * 10 8 7 12 12 N 1.46924 * 108.77273 * 54.63837 * 11 10 8 13 13 C 1.36939 * 120.63342 * 126.41391 * 12 11 10 14 14 H 1.08000 * 119.99344 * 331.05321 * 13 12 11 15 15 C 1.38804 * 120.00071 * 151.04778 * 13 12 11 16 16 N 1.31616 * 120.00045 * 352.29600 * 15 13 12 17 17 Si 1.86804 * 120.00126 * 172.29867 * 15 13 12 18 18 H 1.48507 * 109.46823 * 89.99885 * 17 15 13 19 19 H 1.48489 * 109.47278 * 209.99905 * 17 15 13 20 20 H 1.48499 * 109.46671 * 330.00423 * 17 15 13 21 21 C 1.46932 * 118.73595 * 306.38829 * 12 11 10 22 22 C 1.53049 * 109.45539 * 192.67626 * 8 7 5 23 23 H 1.08999 * 109.48858 * 181.39581 * 22 8 7 24 24 O 1.42895 * 109.49837 * 61.29734 * 22 8 7 25 25 C 1.53000 * 109.47134 * 53.85246 * 4 3 2 26 26 C 1.53006 * 109.47137 * 180.02562 * 25 4 3 27 27 C 1.52995 * 109.47080 * 299.99897 * 26 25 4 28 28 C 1.53000 * 109.47052 * 60.00050 * 27 26 25 29 29 C 1.52994 * 109.47112 * 299.99609 * 28 27 26 30 30 H 1.08005 * 120.00040 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00490 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.00490 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46791 * 7.88573 * 3 2 1 34 34 H 1.09003 * 109.46711 * 247.89482 * 3 2 1 35 35 H 0.97006 * 119.99510 * 1.51908 * 7 5 4 36 36 H 1.08999 * 109.50024 * 178.60529 * 10 8 7 37 37 H 1.09005 * 109.49547 * 298.67135 * 10 8 7 38 38 H 1.09001 * 109.58314 * 174.42430 * 11 10 8 39 39 H 1.08998 * 109.58595 * 294.84661 * 11 10 8 40 40 H 0.97009 * 120.00090 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.58082 * 173.39592 * 21 12 11 42 42 H 1.08995 * 109.59002 * 293.67935 * 21 12 11 43 43 H 0.96698 * 113.99958 * 179.97438 * 24 22 8 44 44 H 1.08998 * 109.47196 * 299.99305 * 25 4 3 45 45 H 1.08995 * 109.47549 * 60.00418 * 25 4 3 46 46 H 1.09000 * 109.46889 * 179.97438 * 26 25 4 47 47 H 1.08999 * 109.47125 * 60.00268 * 26 25 4 48 48 H 1.09004 * 109.47431 * 299.99670 * 27 26 25 49 49 H 1.09002 * 109.47353 * 180.02562 * 27 26 25 50 50 H 1.09003 * 109.46774 * 179.97438 * 28 27 26 51 51 H 1.08992 * 109.47342 * 60.00266 * 28 27 26 52 52 H 1.09001 * 109.47692 * 300.00323 * 29 28 27 53 53 H 1.09005 * 109.47439 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0856 1.3039 1.1383 5 6 2.3642 1.2883 2.4613 6 8 2.4259 2.2507 3.1970 7 7 1.6506 0.2051 2.8270 8 6 0.9221 0.2028 4.0981 9 1 1.5757 0.5642 4.8919 10 6 -0.2996 1.1177 3.9872 11 6 -1.1987 0.6267 2.8482 12 7 -1.5231 -0.7877 3.0781 13 6 -2.8253 -1.2110 3.0958 14 1 -3.6085 -0.5351 3.4060 15 6 -3.1386 -2.5085 2.7150 16 7 -2.2111 -3.2836 2.1942 17 14 -4.8766 -3.1546 2.9418 18 1 -5.6739 -2.8688 1.7219 19 1 -4.8334 -4.6208 3.1727 20 1 -5.5040 -2.4875 4.1107 21 6 -0.4236 -1.7395 3.2880 22 6 0.4668 -1.2220 4.4221 23 1 -0.0966 -1.2204 5.3552 24 8 1.6098 -2.0692 4.5557 25 6 3.9723 0.0621 1.0262 26 6 4.9942 0.0605 2.1649 27 6 5.8623 1.3169 2.0728 28 6 4.9757 2.5588 2.1849 29 6 3.9539 2.5604 1.0462 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3635 2.1288 0.1410 34 1 2.5800 1.4264 -0.9522 35 1 1.6193 -0.5730 2.2486 36 1 -0.8557 1.0972 4.9244 37 1 0.0268 2.1369 3.7800 38 1 -2.1169 1.2137 2.8286 39 1 -0.6750 0.7319 1.8981 40 1 -2.4299 -4.1905 1.9284 41 1 -0.8306 -2.7139 3.5586 42 1 0.1617 -1.8294 2.3730 43 1 1.3954 -2.9893 4.7620 44 1 3.3539 -0.8331 1.0924 45 1 4.4941 0.0733 0.0693 46 1 5.6255 -0.8245 2.0853 47 1 4.4721 0.0489 3.1216 48 1 6.3846 1.3285 1.1161 49 1 6.5907 1.3156 2.8838 50 1 5.5943 3.4539 2.1197 51 1 4.4536 2.5473 3.1416 52 1 4.4760 2.5719 0.0894 53 1 3.3219 3.4449 1.1263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100122499.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:38 Heat of formation + Delta-G solvation = -78.362922 kcal Electronic energy + Delta-G solvation = -33097.569972 eV Core-core repulsion = 29161.665694 eV Total energy + Delta-G solvation = -3935.904278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02740 -39.97089 -38.04808 -36.84957 -36.16765 -35.38680 -33.63857 -32.19426 -31.69452 -30.95206 -30.35640 -27.27799 -26.90206 -24.56109 -23.86687 -23.64743 -23.21925 -21.89762 -20.75058 -20.32432 -19.90487 -18.73181 -18.05379 -17.53496 -16.94326 -16.74615 -16.57406 -16.15835 -15.87291 -15.43978 -15.39645 -15.10113 -15.01126 -14.66519 -14.58474 -14.51733 -14.11321 -13.86397 -13.51647 -13.43166 -13.24741 -13.15537 -12.89467 -12.82335 -12.81618 -12.68590 -12.59105 -12.32713 -12.16780 -12.00044 -11.95613 -11.88350 -11.72042 -11.48644 -11.25582 -11.00664 -10.90688 -10.82370 -10.55478 -10.39439 -10.04086 -9.76437 -8.57540 -7.82023 -5.31286 1.43148 1.47736 1.50526 1.57453 1.85986 2.38077 2.51828 3.18176 3.33583 3.61829 3.71637 3.74068 3.82260 3.94551 4.09805 4.15840 4.18488 4.29089 4.31282 4.33282 4.40182 4.42607 4.53060 4.54308 4.60757 4.67114 4.76364 4.79725 4.80739 4.97196 4.97527 4.99068 5.01982 5.10891 5.14638 5.15467 5.20558 5.28536 5.30559 5.34746 5.41836 5.43532 5.46575 5.62155 5.65466 5.73170 5.76037 5.82958 5.94176 6.42241 6.75612 6.83548 7.19508 7.44120 7.86892 8.38552 9.20523 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.004012 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.225237 B = 6976.707762 C = 7253.086868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.173 4.173 3 C -0.071 4.071 4 C -0.065 4.065 5 C 0.524 3.476 6 O -0.580 6.580 7 N -0.696 5.696 8 C 0.171 3.829 9 H 0.059 0.941 10 C -0.135 4.135 11 C 0.135 3.865 12 N -0.593 5.593 13 C -0.258 4.258 14 H 0.061 0.939 15 C -0.038 4.038 16 N -0.926 5.926 17 Si 0.961 3.039 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.276 1.276 21 C 0.160 3.840 22 C 0.080 3.920 23 H 0.054 0.946 24 O -0.573 6.573 25 C -0.106 4.106 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.129 4.129 29 C -0.089 4.089 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.404 0.596 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.249 0.751 41 H 0.074 0.926 42 H 0.013 0.987 43 H 0.391 0.609 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.032 0.968 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.050 0.950 52 H 0.094 0.906 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.315 6.113 -4.032 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.191 4.191 3 C -0.108 4.108 4 C -0.068 4.068 5 C 0.312 3.688 6 O -0.461 6.461 7 N -0.348 5.348 8 C 0.066 3.934 9 H 0.077 0.923 10 C -0.175 4.175 11 C 0.010 3.990 12 N -0.318 5.318 13 C -0.388 4.388 14 H 0.078 0.922 15 C -0.234 4.234 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.202 1.202 21 C 0.034 3.966 22 C 0.019 3.981 23 H 0.072 0.928 24 O -0.380 6.380 25 C -0.143 4.143 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.167 4.167 29 C -0.126 4.126 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.030 0.970 43 H 0.240 0.760 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.051 0.949 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.087 0.913 51 H 0.069 0.931 52 H 0.113 0.887 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.625 7.167 -3.674 16.696 hybrid contribution -1.861 -1.476 0.428 2.413 sum 12.765 5.691 -3.246 14.348 Atomic orbital electron populations 1.23645 0.96322 1.00922 0.98863 1.22937 0.95317 0.98886 1.01976 1.20732 0.96692 0.94984 0.98430 1.20866 0.95624 0.99123 0.91141 1.20937 0.77806 0.81641 0.88425 1.90579 1.64075 1.35979 1.55481 1.46064 1.49054 1.18196 1.21439 1.20590 0.92492 0.93898 0.86461 0.92302 1.22241 0.96044 0.98572 1.00656 1.21265 0.96417 0.85250 0.96059 1.43961 1.01920 1.02925 1.82944 1.19437 0.85057 0.97144 1.37187 0.92150 1.25628 1.00254 0.98569 0.98934 1.70031 1.33102 1.08136 1.45956 0.85382 0.80997 0.76988 0.77652 1.21605 1.21937 1.20173 1.21262 0.87478 0.94681 0.93226 1.22652 0.86661 0.89735 0.99084 0.92836 1.86372 1.32755 1.24558 1.94272 1.21693 0.96765 0.95245 1.00627 1.21558 0.97808 0.99017 0.97606 1.21517 0.97302 0.93601 1.02570 1.21659 0.97344 0.98363 0.99306 1.21369 0.96520 0.94919 0.99830 0.90499 0.89272 0.86542 0.92163 0.87162 0.75817 0.91744 0.91463 0.93765 0.93385 0.94102 0.90746 0.96957 0.76039 0.91972 0.88132 0.90537 0.94930 0.90004 0.92271 0.91314 0.93134 0.88713 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 11.67 67.79 0.79 -4.35 16 2 C -0.17 -4.55 6.23 25.65 0.16 -4.39 16 3 C -0.07 -1.58 4.72 29.85 0.14 -1.44 16 4 C -0.06 -1.52 0.50 -52.93 -0.03 -1.55 16 5 C 0.52 16.63 4.57 87.66 0.40 17.03 16 6 O -0.58 -21.83 12.94 -3.05 -0.04 -21.87 16 7 N -0.70 -23.03 3.58 -442.40 -1.59 -24.61 16 8 C 0.17 6.23 2.43 45.02 0.11 6.34 16 9 H 0.06 2.26 7.95 -2.39 -0.02 2.24 16 10 C -0.13 -5.02 5.57 30.67 0.17 -4.85 16 11 C 0.14 5.50 6.26 86.36 0.54 6.04 16 12 N -0.59 -27.40 3.00 -699.09 -2.10 -29.50 16 13 C -0.26 -13.34 9.62 84.03 0.81 -12.53 16 14 H 0.06 3.13 7.84 -2.91 -0.02 3.10 16 15 C -0.04 -1.98 5.14 84.86 0.44 -1.55 16 16 N -0.93 -49.73 10.69 21.65 0.23 -49.50 16 17 Si 0.96 42.87 29.56 68.60 2.03 44.90 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.16 6.96 4.63 86.36 0.40 7.36 16 22 C 0.08 2.96 3.31 30.67 0.10 3.07 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 O -0.57 -19.03 13.21 -148.98 -1.97 -21.00 16 25 C -0.11 -2.16 4.19 30.60 0.13 -2.03 16 26 C -0.12 -2.66 5.70 30.59 0.17 -2.48 16 27 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 28 C -0.13 -2.94 5.63 30.59 0.17 -2.76 16 29 C -0.09 -1.89 4.35 30.59 0.13 -1.76 16 30 H 0.08 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.09 2.85 7.24 -2.91 -0.02 2.83 16 32 H 0.12 2.92 6.55 -2.91 -0.02 2.90 16 33 H 0.06 1.48 7.80 -2.39 -0.02 1.46 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.40 13.45 4.04 -92.70 -0.37 13.08 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.51 7.22 -2.38 -0.02 2.49 16 38 H 0.04 1.82 7.93 -2.39 -0.02 1.81 16 39 H 0.05 1.90 3.87 -2.39 -0.01 1.89 16 40 H 0.25 13.16 8.31 -92.70 -0.77 12.39 16 41 H 0.07 3.69 5.79 -2.38 -0.01 3.68 16 42 H 0.01 0.57 6.73 -2.39 -0.02 0.55 16 43 H 0.39 10.38 9.08 -74.06 -0.67 9.70 16 44 H 0.06 1.39 5.39 -2.39 -0.01 1.37 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.03 0.91 7.22 -2.39 -0.02 0.90 16 48 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.05 1.53 5.77 -2.39 -0.01 1.51 16 52 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.05 1.32 8.02 -2.38 -0.02 1.30 16 Total: -1.00 -60.28 382.85 1.25 -59.03 By element: Atomic # 1 Polarization: 44.50 SS G_CDS: -0.13 Total: 44.37 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.82 Total: -1.81 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.45 Total: -103.61 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -2.01 Total: -42.87 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -60.28 1.25 -59.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100122499.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.335 kcal (2) G-P(sol) polarization free energy of solvation -60.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds