Wall clock time and date at job start Tue Mar 31 2020 19:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47102 * 2 1 4 4 C 1.52995 * 109.47536 * 120.00088 * 2 1 3 5 5 C 1.52997 * 109.47291 * 174.79820 * 4 2 1 6 6 C 1.53004 * 110.54295 * 323.21245 * 5 4 2 7 7 C 1.54226 * 110.60892 * 200.36634 * 5 4 2 8 8 C 1.51310 * 103.55917 * 241.48313 * 7 5 4 9 9 O 1.21228 * 125.40219 * 180.02562 * 8 7 5 10 10 N 1.33879 * 109.20585 * 0.02562 * 8 7 5 11 11 C 1.46495 * 122.76482 * 179.97438 * 10 8 7 12 12 N 1.46901 * 109.46918 * 98.12270 * 11 10 8 13 13 C 1.46898 * 111.00054 * 275.88159 * 12 11 10 14 14 C 1.50704 * 109.47451 * 169.99911 * 13 12 11 15 15 H 1.07997 * 119.99562 * 359.73334 * 14 13 12 16 16 C 1.37880 * 120.00092 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99895 * 359.72878 * 16 14 13 18 18 Si 1.86799 * 119.99801 * 179.72838 * 16 14 13 19 19 H 1.48497 * 109.47085 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47140 * 120.00187 * 18 16 14 21 21 H 1.48502 * 109.46998 * 240.00233 * 18 16 14 22 22 C 1.46904 * 110.99879 * 151.93189 * 12 11 10 23 23 C 1.53001 * 109.47175 * 287.91525 * 22 12 11 24 24 C 1.52999 * 117.49873 * 243.80958 * 23 22 12 25 25 C 1.52996 * 117.49791 * 175.18506 * 23 22 12 26 26 C 1.33877 * 114.47301 * 0.26351 * 10 8 7 27 27 O 1.21232 * 125.39729 * 179.70863 * 26 10 8 28 28 H 1.08998 * 109.46772 * 299.99724 * 1 2 3 29 29 H 1.08992 * 109.47312 * 59.99573 * 1 2 3 30 30 H 1.08996 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46999 * 240.00232 * 2 1 3 32 32 H 1.09001 * 109.47259 * 196.72948 * 3 2 1 33 33 H 1.09003 * 109.47449 * 316.73168 * 3 2 1 34 34 H 1.08999 * 109.47605 * 76.73089 * 3 2 1 35 35 H 1.09006 * 109.46877 * 54.80067 * 4 2 1 36 36 H 1.08994 * 109.47199 * 294.80208 * 4 2 1 37 37 H 1.08995 * 109.47185 * 297.85426 * 6 5 4 38 38 H 1.09003 * 109.46790 * 57.85412 * 6 5 4 39 39 H 1.09000 * 109.47446 * 177.84954 * 6 5 4 40 40 H 1.08998 * 110.60797 * 122.96538 * 7 5 4 41 41 H 1.09005 * 110.73828 * 0.06393 * 7 5 4 42 42 H 1.09005 * 109.47279 * 338.12282 * 11 10 8 43 43 H 1.08997 * 109.47550 * 218.11848 * 11 10 8 44 44 H 1.09005 * 109.46904 * 50.00410 * 13 12 11 45 45 H 1.09000 * 109.47451 * 290.00161 * 13 12 11 46 46 H 0.97001 * 119.99460 * 179.97438 * 17 16 14 47 47 H 1.08995 * 109.47285 * 47.91848 * 22 12 11 48 48 H 1.09007 * 109.46987 * 167.91732 * 22 12 11 49 49 H 1.08997 * 115.54677 * 29.51364 * 23 22 12 50 50 H 1.09006 * 117.49909 * 359.97438 * 24 23 22 51 51 H 1.09000 * 117.49782 * 145.01629 * 24 23 22 52 52 H 1.09008 * 117.49538 * 214.97771 * 25 23 22 53 53 H 1.08998 * 117.50247 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5645 -0.8354 1.1854 6 6 4.0245 -1.0850 -0.2523 7 6 4.0642 -1.9578 2.1177 8 6 4.9453 -1.2295 3.1091 9 8 5.5452 -1.7459 4.0272 10 7 4.9574 0.0758 2.8116 11 6 5.7199 1.0583 3.5857 12 7 6.9944 1.3327 2.9088 13 6 8.0067 0.3299 3.2658 14 6 9.2120 0.4939 2.3761 15 1 9.2229 1.2631 1.6181 16 6 10.2983 -0.3419 2.5258 17 7 10.2847 -1.2789 3.4486 18 14 11.7891 -0.1435 1.4179 19 1 11.5553 0.9746 0.4690 20 1 12.9856 0.1516 2.2463 21 1 12.0112 -1.3994 0.6572 22 6 7.4689 2.6900 3.2099 23 6 6.5939 3.7101 2.4786 24 6 7.2632 4.5789 1.4118 25 6 6.8568 5.1921 2.7534 26 6 4.2105 0.4101 1.7520 27 8 4.0756 1.5324 1.3139 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.0890 1.4570 -0.2958 33 1 1.4556 2.0345 -0.7044 34 1 1.9388 1.8637 1.0002 35 1 1.6027 -1.7185 1.2969 36 1 1.7548 -0.1565 2.1367 37 1 3.6156 -2.0316 -0.6055 38 1 3.6725 -0.2758 -0.8921 39 1 5.1134 -1.1254 -0.2836 40 1 4.6428 -2.6925 1.5578 41 1 3.2283 -2.4371 2.6273 42 1 5.9157 0.6628 4.5825 43 1 5.1458 1.9813 3.6674 44 1 7.5909 -0.6690 3.1337 45 1 8.3019 0.4660 4.3062 46 1 11.0489 -1.8671 3.5536 47 1 7.4107 2.8653 4.2841 48 1 8.5025 2.7951 2.8800 49 1 5.5618 3.4057 2.3053 50 1 8.3270 4.4241 1.2312 51 1 6.6714 4.8462 0.5363 52 1 5.9975 5.8628 2.7605 53 1 7.6527 5.4404 3.4554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077164573.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:57 Heat of formation + Delta-G solvation = -55.506055 kcal Electronic energy + Delta-G solvation = -31746.616859 eV Core-core repulsion = 27811.703728 eV Total energy + Delta-G solvation = -3934.913130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.11778 -39.89222 -39.30766 -37.93182 -37.12856 -36.51709 -34.81329 -33.88600 -29.99226 -29.36288 -28.15720 -27.82447 -27.60044 -26.03081 -25.02460 -23.23753 -22.88243 -22.38381 -21.35481 -20.82422 -19.67485 -18.67288 -18.24425 -17.67243 -17.29461 -16.86092 -16.60125 -16.35598 -16.10307 -15.70386 -15.46014 -15.25036 -15.10680 -14.92319 -14.71991 -14.54613 -14.32443 -13.86462 -13.69412 -13.51993 -13.34838 -13.23758 -13.18466 -12.98453 -12.76329 -12.74701 -12.65070 -12.42760 -12.34042 -12.15112 -12.08940 -11.96951 -11.67657 -11.49166 -11.40513 -11.25922 -11.19172 -11.04898 -10.83120 -10.80517 -10.63139 -10.49147 -9.24131 -8.24202 -6.36100 0.61932 1.36103 1.36505 1.49796 1.51773 1.91073 2.35397 2.85344 3.06736 3.07770 3.22075 3.29723 3.43803 3.74622 3.85588 3.91675 4.00855 4.04222 4.16704 4.20594 4.24878 4.28106 4.44898 4.48839 4.55588 4.61542 4.67441 4.70740 4.74845 4.79590 4.82206 4.88143 4.93198 4.97373 5.01935 5.03026 5.10509 5.11504 5.17496 5.20373 5.29413 5.30219 5.33366 5.40674 5.45138 5.56694 5.62606 5.76325 5.89890 5.97623 6.20614 6.41349 6.48361 6.79604 6.90577 7.33562 8.86828 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.004230 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.263638 B = 6617.968352 C = 7868.841147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.088 4.088 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.138 4.138 8 C 0.512 3.488 9 O -0.527 6.527 10 N -0.568 5.568 11 C 0.265 3.735 12 N -0.544 5.544 13 C 0.216 3.784 14 C -0.523 4.523 15 H 0.062 0.938 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.102 3.898 23 C -0.155 4.155 24 C -0.175 4.175 25 C -0.160 4.160 26 C 0.531 3.469 27 O -0.482 6.482 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.005 0.995 45 H -0.044 1.044 46 H 0.264 0.736 47 H 0.029 0.971 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.083 0.917 51 H 0.098 0.902 52 H 0.111 0.889 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.320 2.867 -7.206 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.125 4.125 5 C -0.085 4.085 6 C -0.194 4.194 7 C -0.177 4.177 8 C 0.303 3.697 9 O -0.402 6.402 10 N -0.310 5.310 11 C 0.053 3.947 12 N -0.269 5.269 13 C 0.090 3.910 14 C -0.561 4.561 15 H 0.080 0.920 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.026 4.026 23 C -0.174 4.174 24 C -0.212 4.212 25 C -0.198 4.198 26 C 0.321 3.679 27 O -0.354 6.354 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.130 0.870 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.150 0.850 41 H 0.172 0.828 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.023 0.977 45 H -0.026 1.026 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.086 0.914 49 H 0.121 0.879 50 H 0.101 0.899 51 H 0.117 0.883 52 H 0.129 0.871 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.037 3.068 -7.357 21.564 hybrid contribution 1.681 0.037 1.065 1.990 sum -18.356 3.105 -6.293 19.651 Atomic orbital electron populations 1.21818 0.94226 1.02402 1.01589 1.21293 0.96225 0.95851 0.98361 1.22203 1.01510 0.96212 1.00468 1.21690 0.88560 1.03429 0.98864 1.21532 0.98923 0.90100 0.97906 1.21964 1.00728 1.04894 0.91796 1.22855 1.00984 0.98427 0.95426 1.21771 0.80474 0.82367 0.85039 1.90781 1.45103 1.71428 1.32861 1.47051 1.42959 1.10507 1.30529 1.21969 0.89475 0.92458 0.90773 1.61702 1.03260 1.03601 1.58382 1.19352 0.89497 0.89735 0.92369 1.21402 1.00130 1.16764 1.17806 0.92023 1.25926 1.01905 0.94609 0.97015 1.70141 1.31948 1.20253 1.34789 0.85343 0.78397 0.78365 0.78588 1.18710 1.20233 1.20241 1.21473 0.98577 0.86036 0.96475 1.22209 0.99898 0.91477 1.03787 1.22941 1.00705 1.04187 0.93413 1.23023 1.03797 0.94136 0.98822 1.21304 0.76873 0.91788 0.77893 1.90696 1.60035 1.24708 1.59925 0.93394 0.92575 0.91243 0.89201 0.91945 0.93811 0.94499 0.86964 0.92151 0.87367 0.90248 0.94155 0.84981 0.82823 0.93456 0.87418 0.97729 1.02601 0.92684 0.95271 0.91354 0.87931 0.89864 0.88336 0.87057 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.13 71.98 0.66 -1.03 16 2 C -0.10 -1.45 2.39 -10.80 -0.03 -1.48 16 3 C -0.15 -3.08 7.22 71.98 0.52 -2.56 16 4 C -0.09 -1.27 4.10 30.59 0.13 -1.15 16 5 C -0.08 -1.66 0.71 -52.32 -0.04 -1.70 16 6 C -0.14 -2.55 7.28 71.98 0.52 -2.03 16 7 C -0.14 -2.93 6.27 30.46 0.19 -2.74 16 8 C 0.51 18.01 7.47 87.99 0.66 18.66 16 9 O -0.53 -23.69 16.54 -2.87 -0.05 -23.74 16 10 N -0.57 -20.10 2.80 -767.03 -2.14 -22.24 16 11 C 0.27 10.48 5.09 170.81 0.87 11.35 16 12 N -0.54 -24.83 4.55 -913.14 -4.15 -28.98 16 13 C 0.22 12.21 4.56 85.56 0.39 12.60 16 14 C -0.52 -30.69 8.28 25.60 0.21 -30.48 16 15 H 0.06 3.57 7.27 -2.91 -0.02 3.55 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -58.24 13.29 21.45 0.28 -57.95 16 18 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C 0.10 4.16 5.04 86.30 0.44 4.60 16 23 C -0.16 -5.18 5.51 -10.79 -0.06 -5.24 16 24 C -0.18 -5.29 10.18 30.60 0.31 -4.98 16 25 C -0.16 -4.20 10.25 30.59 0.31 -3.89 16 26 C 0.53 16.02 6.45 87.99 0.57 16.59 16 27 O -0.48 -15.91 12.00 -2.88 -0.03 -15.94 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.14 6.11 -2.38 -0.01 1.13 16 32 H 0.06 1.59 4.47 -2.39 -0.01 1.58 16 33 H 0.04 0.84 8.03 -2.39 -0.02 0.82 16 34 H 0.04 0.89 7.05 -2.39 -0.02 0.87 16 35 H 0.11 0.93 7.84 -2.38 -0.02 0.91 16 36 H 0.06 0.99 7.82 -2.39 -0.02 0.97 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.49 4.91 -2.39 -0.01 1.47 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.13 2.56 7.74 -2.39 -0.02 2.54 16 41 H 0.15 2.09 7.59 -2.38 -0.02 2.08 16 42 H 0.05 2.03 7.38 -2.38 -0.02 2.02 16 43 H 0.11 3.77 6.40 -2.39 -0.02 3.75 16 44 H 0.00 0.29 6.56 -2.38 -0.02 0.27 16 45 H -0.04 -2.72 8.12 -2.39 -0.02 -2.74 16 46 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 47 H 0.03 1.15 8.05 -2.39 -0.02 1.13 16 48 H 0.07 3.09 6.33 -2.38 -0.02 3.07 16 49 H 0.10 3.59 6.48 -2.39 -0.02 3.57 16 50 H 0.08 2.67 8.03 -2.38 -0.02 2.65 16 51 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 52 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 53 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -76.19 405.04 2.93 -73.26 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.89 Total: 20.92 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 6.11 Total: 7.22 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -6.01 Total: -109.17 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.08 Total: -39.68 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.19 2.93 -73.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077164573.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.751 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds