Wall clock time and date at job start Tue Mar 31 2020 19:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47028 * 2 1 4 4 C 1.52997 * 109.46887 * 119.99620 * 2 1 3 5 5 C 1.53001 * 109.47128 * 71.16689 * 4 2 1 6 6 C 1.52996 * 110.66116 * 32.11591 * 5 4 2 7 7 C 1.54230 * 110.60864 * 155.04828 * 5 4 2 8 8 C 1.51314 * 103.55559 * 118.51520 * 7 5 4 9 9 O 1.21228 * 125.39234 * 179.97438 * 8 7 5 10 10 N 1.33874 * 109.20629 * 0.02562 * 8 7 5 11 11 C 1.46498 * 122.75965 * 179.97438 * 10 8 7 12 12 N 1.46894 * 109.47495 * 89.97971 * 11 10 8 13 13 C 1.46901 * 111.00420 * 204.99929 * 12 11 10 14 14 C 1.50703 * 109.46869 * 70.68891 * 13 12 11 15 15 H 1.07998 * 119.99930 * 5.04464 * 14 13 12 16 16 C 1.37874 * 119.99685 * 185.04896 * 14 13 12 17 17 N 1.31517 * 120.00264 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 120.00002 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47081 * 90.00448 * 18 16 14 20 20 H 1.48508 * 109.46692 * 210.00223 * 18 16 14 21 21 H 1.48497 * 109.47026 * 329.99711 * 18 16 14 22 22 C 1.46907 * 111.00063 * 81.04132 * 12 11 10 23 23 C 1.52999 * 109.46807 * 195.20703 * 22 12 11 24 24 C 1.53008 * 117.49474 * 243.62154 * 23 22 12 25 25 C 1.53009 * 117.49557 * 174.96723 * 23 22 12 26 26 C 1.33879 * 114.47582 * 359.97438 * 10 8 7 27 27 O 1.21221 * 125.39523 * 180.02562 * 26 10 8 28 28 H 1.08994 * 109.47445 * 277.83539 * 1 2 3 29 29 H 1.09006 * 109.46815 * 37.83425 * 1 2 3 30 30 H 1.08994 * 109.46955 * 157.82681 * 1 2 3 31 31 H 1.08996 * 109.47773 * 239.99795 * 2 1 3 32 32 H 1.08998 * 109.46810 * 184.79787 * 3 2 1 33 33 H 1.09003 * 109.47081 * 304.79180 * 3 2 1 34 34 H 1.09000 * 109.47142 * 64.79360 * 3 2 1 35 35 H 1.09004 * 109.47338 * 311.16507 * 4 2 1 36 36 H 1.08999 * 109.47189 * 191.16932 * 4 2 1 37 37 H 1.08995 * 109.47018 * 176.65964 * 6 5 4 38 38 H 1.09002 * 109.47088 * 296.66184 * 6 5 4 39 39 H 1.09002 * 109.47256 * 56.66280 * 6 5 4 40 40 H 1.08993 * 110.60476 * 237.03784 * 7 5 4 41 41 H 1.09008 * 110.60168 * 359.97438 * 7 5 4 42 42 H 1.09005 * 109.46632 * 209.97736 * 11 10 8 43 43 H 1.08994 * 109.47146 * 329.97417 * 11 10 8 44 44 H 1.08997 * 109.46994 * 190.68951 * 13 12 11 45 45 H 1.08999 * 109.46657 * 310.68777 * 13 12 11 46 46 H 0.96994 * 120.00041 * 179.97438 * 17 16 14 47 47 H 1.08997 * 109.46798 * 315.20746 * 22 12 11 48 48 H 1.08999 * 109.47022 * 75.20933 * 22 12 11 49 49 H 1.08998 * 115.55467 * 29.29513 * 23 22 12 50 50 H 1.08997 * 117.49751 * 0.02562 * 24 23 22 51 51 H 1.09001 * 117.49798 * 145.02426 * 24 23 22 52 52 H 1.09004 * 117.49606 * 214.97748 * 25 23 22 53 53 H 1.08997 * 117.49675 * 359.96957 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.7709 -2.2216 1.1176 6 6 1.8511 -2.6579 -0.3467 7 6 2.7629 -3.0287 1.9796 8 6 1.8702 -3.7526 2.9638 9 8 2.2504 -4.5068 3.8334 10 7 0.5940 -3.4289 2.7213 11 6 -0.5223 -3.9656 3.5036 12 7 -0.7919 -3.0796 4.6438 13 6 -1.4396 -3.8134 5.7392 14 6 -0.4453 -4.7531 6.3713 15 1 0.5863 -4.7425 6.0517 16 6 -0.8527 -5.6263 7.3574 17 7 0.0150 -6.4461 7.9094 18 14 -2.6369 -5.6442 7.9104 19 1 -3.4017 -6.6119 7.0836 20 1 -2.7086 -6.0475 9.3379 21 1 -3.2185 -4.2874 7.7497 22 6 -1.6012 -1.9244 4.2331 23 6 -1.5455 -0.8501 5.3212 24 6 -2.8543 -0.4930 6.0288 25 6 -2.2318 0.4861 5.0303 26 6 0.4219 -2.5746 1.7050 27 8 -0.6455 -2.1507 1.3171 28 1 -0.3634 0.1401 1.0180 29 1 -0.3633 0.8117 -0.6304 30 1 -0.3633 -0.9516 -0.3878 31 1 1.8934 -0.5138 -0.8899 32 1 3.1266 1.4437 -0.0860 33 1 1.6083 1.9806 -0.8440 34 1 1.7485 1.9310 0.9298 35 1 1.5233 -0.3351 2.1280 36 1 3.1116 -0.5520 1.3545 37 1 1.7155 -3.7374 -0.4120 38 1 1.0688 -2.1582 -0.9181 39 1 2.8261 -2.3889 -0.7531 40 1 3.3135 -3.7410 1.3652 41 1 3.4484 -2.3612 2.5019 42 1 -1.4101 -4.0280 2.8742 43 1 -0.2652 -4.9598 3.8688 44 1 -1.7983 -3.1068 6.4876 45 1 -2.2806 -4.3847 5.3463 46 1 -0.2715 -7.0602 8.6034 47 1 -1.2080 -1.5183 3.3011 48 1 -2.6343 -2.2387 4.0853 49 1 -0.6308 -0.8277 5.9134 50 1 -3.7547 -1.0237 5.7194 51 1 -2.8005 -0.2353 7.0865 52 1 -1.7686 1.3876 5.4316 53 1 -2.7224 0.6000 4.0636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077164574.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:00 Heat of formation + Delta-G solvation = -56.866174 kcal Electronic energy + Delta-G solvation = -31837.487760 eV Core-core repulsion = 27902.515650 eV Total energy + Delta-G solvation = -3934.972109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.14541 -39.78546 -39.44105 -38.06699 -37.18402 -36.48772 -34.73203 -33.93801 -30.29779 -29.68540 -28.18045 -27.84532 -27.63045 -25.76882 -24.93705 -23.28635 -22.87996 -22.34712 -21.24863 -20.87868 -19.70843 -19.02111 -18.21832 -17.82720 -17.30961 -16.88539 -16.50718 -16.34685 -16.09378 -15.71608 -15.44868 -15.20726 -15.11100 -14.95506 -14.79224 -14.66294 -14.40005 -14.15137 -13.68242 -13.53485 -13.39894 -13.31338 -13.21289 -13.05313 -12.72660 -12.62724 -12.55943 -12.42273 -12.39614 -12.31316 -12.07294 -11.88373 -11.67010 -11.55921 -11.47298 -11.33101 -11.23434 -11.04310 -10.88684 -10.84524 -10.75453 -10.64124 -9.30569 -8.28004 -6.32298 0.59829 1.30130 1.32177 1.43475 1.52485 1.83925 2.31562 2.82065 3.03474 3.04524 3.07585 3.27510 3.43863 3.73494 3.82807 3.88725 3.98643 4.03468 4.07901 4.19411 4.26633 4.36083 4.38136 4.43167 4.45545 4.57178 4.64755 4.68789 4.71590 4.71876 4.81874 4.84320 4.88715 4.93138 4.94173 4.96820 4.99647 5.01882 5.10982 5.19188 5.21111 5.28206 5.29912 5.33335 5.43307 5.49705 5.61650 5.70701 5.86429 5.94945 6.14685 6.46820 6.54484 6.76989 6.89849 7.30662 8.89095 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.004177 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.929644 B = 6701.104399 C = 8160.998960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.092 4.092 5 C -0.080 4.080 6 C -0.135 4.135 7 C -0.136 4.136 8 C 0.513 3.487 9 O -0.519 6.519 10 N -0.568 5.568 11 C 0.276 3.724 12 N -0.547 5.547 13 C 0.185 3.815 14 C -0.516 4.516 15 H 0.036 0.964 16 C 0.011 3.989 17 N -0.946 5.946 18 Si 0.944 3.056 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.248 1.248 22 C 0.087 3.913 23 C -0.161 4.161 24 C -0.185 4.185 25 C -0.151 4.151 26 C 0.529 3.471 27 O -0.494 6.494 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.039 0.961 45 H -0.011 1.011 46 H 0.266 0.734 47 H 0.082 0.918 48 H 0.027 0.973 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.097 0.903 52 H 0.109 0.891 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 16.174 -20.174 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.192 4.192 7 C -0.175 4.175 8 C 0.304 3.696 9 O -0.392 6.392 10 N -0.311 5.311 11 C 0.064 3.936 12 N -0.273 5.273 13 C 0.058 3.942 14 C -0.554 4.554 15 H 0.055 0.945 16 C -0.187 4.187 17 N -0.587 5.587 18 Si 0.767 3.233 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.171 1.171 22 C -0.040 4.040 23 C -0.180 4.180 24 C -0.222 4.222 25 C -0.189 4.189 26 C 0.319 3.681 27 O -0.367 6.367 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.007 0.993 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.046 0.954 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.115 0.885 52 H 0.128 0.872 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.848 16.017 -19.597 25.469 hybrid contribution -1.641 -1.165 1.055 2.272 sum 1.207 14.852 -18.542 23.787 Atomic orbital electron populations 1.22015 0.95848 1.01538 1.00643 1.21316 0.95266 0.96637 0.98280 1.21856 1.01600 0.95294 1.01510 1.21727 1.03497 0.89083 0.98669 1.21563 0.89071 0.98937 0.98778 1.21990 1.05452 1.01569 0.90181 1.22894 0.97580 1.00854 0.96167 1.21806 0.83498 0.80157 0.84168 1.90861 1.78375 1.35790 1.34188 1.47116 1.09827 1.43025 1.31142 1.21805 0.88269 0.95030 0.88491 1.61502 1.48259 1.09448 1.08069 1.19839 0.92345 0.92552 0.89430 1.21250 0.96219 1.18121 1.19810 0.94527 1.25824 1.02199 0.94571 0.96074 1.70081 1.36853 1.23839 1.27883 0.85775 0.79806 0.79887 0.77853 1.19246 1.20576 1.17150 1.21797 0.94734 0.90136 0.97336 1.22155 0.97175 0.97153 1.01508 1.23090 0.96255 1.04195 0.98632 1.22998 1.02677 0.92719 1.00460 1.21453 0.93059 0.75557 0.77998 1.90683 1.31411 1.52185 1.62418 0.94924 0.93151 0.92371 0.88321 0.91326 0.92293 0.93762 0.93328 0.87416 0.92254 0.90565 0.87264 0.83291 0.84249 0.91423 0.90153 0.94296 0.99333 0.92505 0.90027 0.95440 0.89202 0.89128 0.88499 0.87225 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 7.52 71.98 0.54 -2.12 16 2 C -0.10 -1.27 2.39 -10.79 -0.03 -1.29 16 3 C -0.15 -1.64 9.10 71.98 0.66 -0.98 16 4 C -0.09 -1.37 4.22 30.59 0.13 -1.24 16 5 C -0.08 -1.41 0.75 -52.32 -0.04 -1.45 16 6 C -0.14 -1.59 7.04 71.98 0.51 -1.08 16 7 C -0.14 -2.56 6.28 30.46 0.19 -2.37 16 8 C 0.51 17.63 8.08 87.99 0.71 18.34 16 9 O -0.52 -24.29 17.48 -2.87 -0.05 -24.34 16 10 N -0.57 -19.50 2.77 -767.05 -2.13 -21.62 16 11 C 0.28 11.43 5.22 170.81 0.89 12.32 16 12 N -0.55 -24.00 4.52 -913.17 -4.13 -28.13 16 13 C 0.19 9.25 3.62 85.56 0.31 9.56 16 14 C -0.52 -31.28 8.77 25.60 0.22 -31.06 16 15 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 16 C 0.01 0.65 5.47 84.65 0.46 1.11 16 17 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 18 Si 0.94 45.38 27.37 68.60 1.88 47.25 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.25 -11.08 6.69 99.48 0.67 -10.41 16 22 C 0.09 3.18 5.10 86.30 0.44 3.62 16 23 C -0.16 -5.37 4.93 -10.79 -0.05 -5.42 16 24 C -0.18 -5.33 10.09 30.62 0.31 -5.03 16 25 C -0.15 -3.79 10.25 30.62 0.31 -3.47 16 26 C 0.53 14.53 5.77 87.99 0.51 15.04 16 27 O -0.49 -14.90 11.54 -2.85 -0.03 -14.93 16 28 H 0.03 0.76 7.05 -2.39 -0.02 0.74 16 29 H 0.05 0.83 7.87 -2.38 -0.02 0.81 16 30 H 0.06 1.21 5.16 -2.39 -0.01 1.20 16 31 H 0.10 0.94 5.76 -2.39 -0.01 0.93 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.62 8.03 -2.39 -0.02 0.60 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.97 7.59 -2.38 -0.02 0.95 16 36 H 0.11 1.03 7.65 -2.39 -0.02 1.01 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.97 5.28 -2.39 -0.01 0.96 16 39 H 0.11 0.60 7.92 -2.39 -0.02 0.58 16 40 H 0.15 1.91 7.74 -2.39 -0.02 1.89 16 41 H 0.14 2.10 7.51 -2.38 -0.02 2.09 16 42 H 0.07 2.60 7.61 -2.38 -0.02 2.58 16 43 H 0.08 3.95 6.70 -2.39 -0.02 3.93 16 44 H 0.04 1.94 6.48 -2.39 -0.02 1.92 16 45 H -0.01 -0.54 7.22 -2.39 -0.02 -0.56 16 46 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 47 H 0.08 2.87 5.14 -2.39 -0.01 2.86 16 48 H 0.03 1.00 7.80 -2.39 -0.02 0.98 16 49 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 50 H 0.09 2.58 8.03 -2.39 -0.02 2.56 16 51 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 52 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 53 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -79.50 403.02 2.76 -76.74 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.85 Total: 21.89 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.08 Total: 4.48 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -5.95 Total: -111.09 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.08 Total: -39.27 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.25 kcal Total: -79.50 2.76 -76.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077164574.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.869 kcal (2) G-P(sol) polarization free energy of solvation -79.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds