Wall clock time and date at job start Tue Mar 31 2020 19:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00083 * 2 1 4 4 C 1.53000 * 109.47175 * 125.00007 * 3 2 1 5 5 C 1.53005 * 109.46571 * 65.00312 * 4 3 2 6 6 C 1.50707 * 109.46844 * 184.76719 * 5 4 3 7 7 C 1.30997 * 119.99982 * 125.42601 * 6 5 4 8 8 C 1.50699 * 109.47365 * 185.00142 * 4 3 2 9 9 O 1.21278 * 119.99604 * 274.85166 * 8 4 3 10 10 N 1.34773 * 120.00082 * 94.57137 * 8 4 3 11 11 C 1.46504 * 119.99899 * 355.17986 * 10 8 4 12 12 C 1.50698 * 109.47542 * 94.63777 * 11 10 8 13 13 H 1.08000 * 119.99990 * 355.08518 * 12 11 10 14 14 C 1.37874 * 120.00052 * 175.08859 * 12 11 10 15 15 N 1.31517 * 119.99832 * 185.05585 * 14 12 11 16 16 Si 1.86804 * 120.00014 * 5.05700 * 14 12 11 17 17 H 1.48499 * 109.47101 * 94.90959 * 16 14 12 18 18 H 1.48504 * 109.46770 * 214.90770 * 16 14 12 19 19 H 1.48497 * 109.46986 * 334.90559 * 16 14 12 20 20 C 1.46499 * 120.00022 * 175.17198 * 10 8 4 21 21 C 1.52998 * 109.46933 * 90.00713 * 20 10 8 22 22 N 1.46903 * 109.47086 * 180.02562 * 21 20 10 23 23 C 1.47015 * 110.99741 * 293.63045 * 22 21 20 24 24 C 1.53101 * 109.25508 * 177.60674 * 23 22 21 25 25 O 1.43021 * 109.25655 * 56.84935 * 24 23 22 26 26 C 1.43013 * 113.73646 * 301.32865 * 25 24 23 27 27 C 1.47013 * 111.00122 * 169.99457 * 22 21 20 28 28 H 1.07996 * 120.00305 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99976 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99817 * 180.02562 * 2 1 3 31 31 H 1.09009 * 109.47129 * 5.00589 * 3 2 1 32 32 H 1.08999 * 109.47318 * 245.00547 * 3 2 1 33 33 H 1.09008 * 109.47351 * 305.00540 * 4 3 2 34 34 H 1.08995 * 109.46942 * 304.76003 * 5 4 3 35 35 H 1.08996 * 109.47267 * 64.76489 * 5 4 3 36 36 H 1.08007 * 119.99463 * 305.42287 * 6 5 4 37 37 H 1.08004 * 119.99532 * 185.00644 * 7 6 5 38 38 H 1.07992 * 120.00343 * 5.01385 * 7 6 5 39 39 H 1.08997 * 109.47032 * 214.64040 * 11 10 8 40 40 H 1.09002 * 109.46861 * 334.63313 * 11 10 8 41 41 H 0.97005 * 119.99619 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.47053 * 210.00083 * 20 10 8 43 43 H 1.08993 * 109.47249 * 330.00337 * 20 10 8 44 44 H 1.09005 * 109.46467 * 299.99595 * 21 20 10 45 45 H 1.08993 * 109.47460 * 59.99753 * 21 20 10 46 46 H 1.08996 * 109.50676 * 297.54484 * 23 22 21 47 47 H 1.08995 * 109.50477 * 57.67502 * 23 22 21 48 48 H 1.08994 * 109.50445 * 296.91484 * 24 23 22 49 49 H 1.08997 * 109.53951 * 176.80395 * 24 23 22 50 50 H 1.09000 * 109.50369 * 298.73164 * 26 25 24 51 51 H 1.09005 * 109.53952 * 178.63106 * 26 25 24 52 52 H 1.09000 * 109.50616 * 302.32749 * 27 22 21 53 53 H 1.09004 * 109.50663 * 62.41108 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0999 0.2509 0.9919 6 6 4.9867 0.1999 2.2094 7 6 5.1564 -0.9306 2.8492 8 6 3.6991 2.6839 1.2542 9 8 4.6878 2.9100 0.5892 10 7 3.1909 3.6425 2.0537 11 6 1.9350 3.4085 2.7709 12 6 2.2354 2.9033 4.1585 13 1 3.2546 2.6944 4.4483 14 6 1.2091 2.7079 5.0582 15 7 1.4786 2.3629 6.2984 16 14 -0.5642 2.9330 4.5156 17 1 -1.1317 1.6187 4.1210 18 1 -1.3570 3.4979 5.6371 19 1 -0.6134 3.8614 3.3577 20 6 3.8945 4.9184 2.2059 21 6 3.4017 5.9024 1.1430 22 7 4.1077 7.1817 1.2951 23 6 3.7466 7.8353 2.5615 24 6 4.5476 9.1320 2.7068 25 8 4.2983 9.9697 1.5748 26 6 4.6393 9.3646 0.3246 27 6 3.8393 8.0704 0.1552 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6212 1.4026 -0.9314 33 1 2.4883 1.1468 2.1061 34 1 3.6152 -0.7157 0.8548 35 1 4.7018 0.4834 0.1135 36 1 5.4823 1.0954 2.5543 37 1 5.7256 -0.9514 3.7669 38 1 4.7272 -1.8415 2.4592 39 1 1.3752 4.3413 2.8371 40 1 1.3431 2.6669 2.2344 41 1 0.7565 2.2250 6.9312 42 1 3.6975 5.3260 3.1974 43 1 4.9659 4.7592 2.0848 44 1 3.5987 5.4948 0.1514 45 1 2.3303 6.0617 1.2641 46 1 2.6808 8.0638 2.5623 47 1 3.9774 7.1698 3.3933 48 1 5.6109 8.8988 2.7600 49 1 4.2423 9.6490 3.6165 50 1 5.7054 9.1383 0.3086 51 1 4.4003 10.0494 -0.4891 52 1 4.1377 7.5765 -0.7695 53 1 2.7749 8.3020 0.1169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268252200.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:03 Heat of formation + Delta-G solvation = -39.569519 kcal Electronic energy + Delta-G solvation = -30771.734744 eV Core-core repulsion = 26837.512674 eV Total energy + Delta-G solvation = -3934.222070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.87321 -39.38479 -36.57453 -35.76166 -34.93350 -33.91626 -32.58470 -31.30792 -30.96894 -29.72841 -27.82826 -26.20081 -25.99042 -24.07010 -23.40020 -22.55944 -21.37051 -20.33967 -19.77851 -19.25244 -17.96874 -17.11131 -16.83191 -16.53551 -16.19058 -15.57619 -15.30557 -15.14831 -15.03150 -14.85536 -14.60857 -14.25586 -14.06777 -13.71325 -13.47937 -13.12179 -12.97362 -12.82814 -12.57217 -12.42483 -12.31561 -12.16915 -11.94805 -11.82384 -11.49356 -11.41287 -11.14215 -11.09067 -10.80715 -10.79340 -10.71413 -10.67127 -10.44278 -10.38668 -10.22398 -9.76844 -9.66087 -9.27331 -8.95316 -8.87029 -8.73655 -8.39799 -7.80657 -6.25568 -4.26692 2.40320 2.71610 3.13525 3.20210 3.22999 3.27965 3.50046 3.78893 4.10160 4.22589 4.80915 4.88448 4.96274 4.99075 5.05131 5.08441 5.15410 5.20357 5.21794 5.31889 5.42936 5.43796 5.49350 5.51369 5.59010 5.63459 5.69983 5.71736 5.78170 5.83148 5.90293 5.92443 5.94314 6.02882 6.05279 6.20411 6.23770 6.36041 6.38813 6.40245 6.55724 6.65325 6.75343 6.90527 6.94810 6.96347 7.05542 7.06975 7.18905 7.29306 7.41613 8.08169 8.36907 8.79383 8.89135 9.34332 10.86935 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008974 B = 0.003933 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.329402 B = 7117.210600 C = 8314.741383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.081 4.081 4 C -0.103 4.103 5 C -0.074 4.074 6 C -0.135 4.135 7 C -0.203 4.203 8 C 0.525 3.475 9 O -0.564 6.564 10 N -0.589 5.589 11 C 0.208 3.792 12 C -0.540 4.540 13 H 0.079 0.921 14 C 0.079 3.921 15 N -0.887 5.887 16 Si 0.865 3.135 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.126 3.874 21 C 0.045 3.955 22 N -0.532 5.532 23 C 0.011 3.989 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.019 3.981 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.266 0.734 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.043 0.957 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.059 0.941 51 H 0.095 0.905 52 H 0.085 0.915 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 4.327 -11.314 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.163 4.163 3 C -0.119 4.119 4 C -0.125 4.125 5 C -0.112 4.112 6 C -0.153 4.153 7 C -0.240 4.240 8 C 0.314 3.686 9 O -0.444 6.444 10 N -0.319 5.319 11 C 0.087 3.913 12 C -0.578 4.578 13 H 0.097 0.903 14 C -0.125 4.125 15 N -0.524 5.524 16 Si 0.692 3.308 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.003 3.997 21 C -0.084 4.084 22 N -0.258 5.258 23 C -0.117 4.117 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.116 0.884 50 H 0.078 0.922 51 H 0.113 0.887 52 H 0.103 0.897 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.650 4.505 -11.426 12.564 hybrid contribution -1.986 -0.116 0.139 1.995 sum 0.663 4.389 -11.286 12.128 Atomic orbital electron populations 1.23826 0.95988 1.01710 1.01807 1.22906 0.95858 0.98299 0.99251 1.20656 0.97508 0.95877 0.97816 1.21338 0.96973 0.92648 1.01500 1.20644 0.95394 0.97778 0.97357 1.22906 0.97402 0.98421 0.96578 1.23682 1.03230 0.97207 0.99883 1.20418 0.83822 0.85792 0.78594 1.90600 1.27286 1.81919 1.44612 1.47912 1.25404 1.13734 1.44874 1.19871 0.81472 0.96926 0.93057 1.21332 0.96348 1.45349 0.94773 0.90260 1.24849 0.98699 0.94369 0.94543 1.69900 1.32691 1.46491 1.03358 0.87024 0.85668 0.79189 0.78943 1.19720 1.20861 1.18914 1.21180 0.97615 0.83024 0.97923 1.22508 0.95704 0.89023 1.01171 1.62134 1.58067 1.03789 1.01821 1.22894 0.98592 0.96628 0.93556 1.22684 0.99422 0.90224 0.88903 1.87957 1.86611 1.41535 1.14671 1.22637 0.98768 0.93399 0.86389 1.22759 0.98913 0.94315 0.94989 0.88712 0.88618 0.87154 0.91233 0.90582 0.86807 0.91109 0.90357 0.87633 0.88778 0.89083 0.95222 0.95012 0.92388 0.90210 0.90048 0.90484 0.94705 0.93861 0.88723 0.92177 0.88444 0.92249 0.88719 0.89713 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.47 14.32 29.01 0.42 -2.06 16 2 C -0.15 -1.90 9.03 -36.03 -0.33 -2.23 16 3 C -0.08 -1.18 4.93 -27.88 -0.14 -1.32 16 4 C -0.10 -1.78 1.34 -91.77 -0.12 -1.90 16 5 C -0.07 -1.16 4.78 -27.88 -0.13 -1.30 16 6 C -0.14 -2.30 9.08 -36.02 -0.33 -2.63 16 7 C -0.20 -3.12 14.31 29.02 0.42 -2.71 16 8 C 0.53 10.17 5.89 -10.99 -0.06 10.11 16 9 O -0.56 -11.83 15.79 5.56 0.09 -11.74 16 10 N -0.59 -11.60 2.46 -175.07 -0.43 -12.03 16 11 C 0.21 4.45 3.77 -5.19 -0.02 4.43 16 12 C -0.54 -13.77 9.55 -34.44 -0.33 -14.10 16 13 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 14 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.89 -25.29 13.96 55.43 0.77 -24.51 16 16 Si 0.87 19.49 27.59 -169.99 -4.69 14.80 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.26 -5.62 6.39 56.52 0.36 -5.26 16 20 C 0.13 2.27 5.32 -4.04 -0.02 2.25 16 21 C 0.04 0.70 5.28 -3.82 -0.02 0.68 16 22 N -0.53 -7.45 4.73 -234.31 -1.11 -8.55 16 23 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 24 C 0.06 0.75 7.01 37.21 0.26 1.01 16 25 O -0.39 -4.95 10.83 -35.23 -0.38 -5.33 16 26 C 0.07 0.70 7.01 37.20 0.26 0.96 16 27 C 0.02 0.22 5.64 -3.72 -0.02 0.20 16 28 H 0.09 1.19 7.84 -52.49 -0.41 0.78 16 29 H 0.10 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.11 1.30 6.87 -52.49 -0.36 0.94 16 31 H 0.07 1.04 7.25 -51.92 -0.38 0.66 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.11 2.23 6.20 -51.92 -0.32 1.91 16 34 H 0.07 0.96 6.21 -51.93 -0.32 0.63 16 35 H 0.08 1.23 7.69 -51.93 -0.40 0.83 16 36 H 0.11 2.01 7.75 -52.48 -0.41 1.60 16 37 H 0.09 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.09 1.23 7.86 -52.49 -0.41 0.81 16 39 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 40 H 0.03 0.66 5.26 -51.93 -0.27 0.39 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.08 1.46 6.45 -51.93 -0.33 1.13 16 43 H 0.08 1.54 7.50 -51.93 -0.39 1.15 16 44 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 45 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.27 6.38 -51.93 -0.33 0.94 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 53 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 418.13 15.07 6.30 6.30 Total: -1.00 -29.34 418.13 -9.10 -38.44 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -9.37 Total: 9.10 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.29 Total: -6.47 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.76 Total: -45.09 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.29 Total: -17.07 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.69 Total: 14.80 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -29.34 -9.10 -38.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268252200.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.128 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds