Wall clock time and date at job start Tue Mar 31 2020 19:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00083 * 2 1 4 4 C 1.53000 * 109.47175 * 125.00007 * 3 2 1 5 5 C 1.53005 * 109.46571 * 65.00312 * 4 3 2 6 6 C 1.50707 * 109.46844 * 184.76719 * 5 4 3 7 7 C 1.30997 * 119.99982 * 125.42601 * 6 5 4 8 8 C 1.50699 * 109.47365 * 185.00142 * 4 3 2 9 9 O 1.21278 * 119.99604 * 274.85166 * 8 4 3 10 10 N 1.34773 * 120.00082 * 94.57137 * 8 4 3 11 11 C 1.46504 * 119.99899 * 355.17986 * 10 8 4 12 12 C 1.50698 * 109.47542 * 94.63777 * 11 10 8 13 13 H 1.08000 * 119.99990 * 355.08518 * 12 11 10 14 14 C 1.37874 * 120.00052 * 175.08859 * 12 11 10 15 15 N 1.31517 * 119.99832 * 185.05585 * 14 12 11 16 16 Si 1.86804 * 120.00014 * 5.05700 * 14 12 11 17 17 H 1.48499 * 109.47101 * 94.90959 * 16 14 12 18 18 H 1.48504 * 109.46770 * 214.90770 * 16 14 12 19 19 H 1.48497 * 109.46986 * 334.90559 * 16 14 12 20 20 C 1.46499 * 120.00022 * 175.17198 * 10 8 4 21 21 C 1.52998 * 109.46933 * 90.00713 * 20 10 8 22 22 N 1.46903 * 109.47086 * 180.02562 * 21 20 10 23 23 C 1.47015 * 110.99741 * 293.63045 * 22 21 20 24 24 C 1.53101 * 109.25508 * 177.60674 * 23 22 21 25 25 O 1.43021 * 109.25655 * 56.84935 * 24 23 22 26 26 C 1.43013 * 113.73646 * 301.32865 * 25 24 23 27 27 C 1.47013 * 111.00122 * 169.99457 * 22 21 20 28 28 H 1.07996 * 120.00305 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99976 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99817 * 180.02562 * 2 1 3 31 31 H 1.09009 * 109.47129 * 5.00589 * 3 2 1 32 32 H 1.08999 * 109.47318 * 245.00547 * 3 2 1 33 33 H 1.09008 * 109.47351 * 305.00540 * 4 3 2 34 34 H 1.08995 * 109.46942 * 304.76003 * 5 4 3 35 35 H 1.08996 * 109.47267 * 64.76489 * 5 4 3 36 36 H 1.08007 * 119.99463 * 305.42287 * 6 5 4 37 37 H 1.08004 * 119.99532 * 185.00644 * 7 6 5 38 38 H 1.07992 * 120.00343 * 5.01385 * 7 6 5 39 39 H 1.08997 * 109.47032 * 214.64040 * 11 10 8 40 40 H 1.09002 * 109.46861 * 334.63313 * 11 10 8 41 41 H 0.97005 * 119.99619 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.47053 * 210.00083 * 20 10 8 43 43 H 1.08993 * 109.47249 * 330.00337 * 20 10 8 44 44 H 1.09005 * 109.46467 * 299.99595 * 21 20 10 45 45 H 1.08993 * 109.47460 * 59.99753 * 21 20 10 46 46 H 1.08996 * 109.50676 * 297.54484 * 23 22 21 47 47 H 1.08995 * 109.50477 * 57.67502 * 23 22 21 48 48 H 1.08994 * 109.50445 * 296.91484 * 24 23 22 49 49 H 1.08997 * 109.53951 * 176.80395 * 24 23 22 50 50 H 1.09000 * 109.50369 * 298.73164 * 26 25 24 51 51 H 1.09005 * 109.53952 * 178.63106 * 26 25 24 52 52 H 1.09000 * 109.50616 * 302.32749 * 27 22 21 53 53 H 1.09004 * 109.50663 * 62.41108 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0999 0.2509 0.9919 6 6 4.9867 0.1999 2.2094 7 6 5.1564 -0.9306 2.8492 8 6 3.6991 2.6839 1.2542 9 8 4.6878 2.9100 0.5892 10 7 3.1909 3.6425 2.0537 11 6 1.9350 3.4085 2.7709 12 6 2.2354 2.9033 4.1585 13 1 3.2546 2.6944 4.4483 14 6 1.2091 2.7079 5.0582 15 7 1.4786 2.3629 6.2984 16 14 -0.5642 2.9330 4.5156 17 1 -1.1317 1.6187 4.1210 18 1 -1.3570 3.4979 5.6371 19 1 -0.6134 3.8614 3.3577 20 6 3.8945 4.9184 2.2059 21 6 3.4017 5.9024 1.1430 22 7 4.1077 7.1817 1.2951 23 6 3.7466 7.8353 2.5615 24 6 4.5476 9.1320 2.7068 25 8 4.2983 9.9697 1.5748 26 6 4.6393 9.3646 0.3246 27 6 3.8393 8.0704 0.1552 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6212 1.4026 -0.9314 33 1 2.4883 1.1468 2.1061 34 1 3.6152 -0.7157 0.8548 35 1 4.7018 0.4834 0.1135 36 1 5.4823 1.0954 2.5543 37 1 5.7256 -0.9514 3.7669 38 1 4.7272 -1.8415 2.4592 39 1 1.3752 4.3413 2.8371 40 1 1.3431 2.6669 2.2344 41 1 0.7565 2.2250 6.9312 42 1 3.6975 5.3260 3.1974 43 1 4.9659 4.7592 2.0848 44 1 3.5987 5.4948 0.1514 45 1 2.3303 6.0617 1.2641 46 1 2.6808 8.0638 2.5623 47 1 3.9774 7.1698 3.3933 48 1 5.6109 8.8988 2.7600 49 1 4.2423 9.6490 3.6165 50 1 5.7054 9.1383 0.3086 51 1 4.4003 10.0494 -0.4891 52 1 4.1377 7.5765 -0.7695 53 1 2.7749 8.3020 0.1169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268252200.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:03 Heat of formation + Delta-G solvation = -57.075364 kcal Electronic energy + Delta-G solvation = -30772.493855 eV Core-core repulsion = 26837.512674 eV Total energy + Delta-G solvation = -3934.981181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31519 -40.48180 -37.83438 -37.06927 -36.41386 -35.10819 -34.53319 -32.38555 -32.11546 -31.11189 -29.52947 -27.44266 -27.15761 -25.05384 -24.84205 -24.24511 -22.66559 -21.38655 -21.01044 -20.40503 -19.51533 -19.06247 -18.32099 -17.75485 -17.21069 -16.92530 -16.50746 -16.32854 -16.23545 -16.02633 -15.97038 -15.69142 -15.36534 -15.04918 -14.71984 -14.58190 -14.32560 -14.25654 -14.06499 -13.72585 -13.62497 -13.40236 -13.35277 -13.13699 -12.93132 -12.55396 -12.50118 -12.35664 -12.28899 -12.14486 -12.10596 -11.87506 -11.84156 -11.74224 -11.63456 -11.48300 -10.80242 -10.74273 -10.58424 -10.18999 -10.14646 -9.58726 -9.39688 -8.30691 -6.37005 1.36563 1.37530 1.38683 1.42236 1.46606 1.76079 2.11445 2.32140 2.80502 2.95849 3.03846 3.54937 3.79547 3.86758 3.93078 3.95707 3.97603 4.06373 4.16490 4.18834 4.26822 4.30301 4.34273 4.36255 4.42712 4.48942 4.54922 4.56415 4.65807 4.69729 4.74871 4.76452 4.78845 4.80295 4.84824 4.88447 4.94479 4.97763 4.99793 5.10276 5.14750 5.25003 5.42601 5.60768 5.72163 5.78610 5.85051 5.89950 5.90298 5.93558 6.13965 6.17789 6.60078 6.69286 7.23126 7.34218 8.85487 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008974 B = 0.003933 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.329402 B = 7117.210600 C = 8314.741383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C -0.075 4.075 4 C -0.099 4.099 5 C -0.066 4.066 6 C -0.164 4.164 7 C -0.188 4.188 8 C 0.522 3.478 9 O -0.583 6.583 10 N -0.596 5.596 11 C 0.220 3.780 12 C -0.536 4.536 13 H 0.031 0.969 14 C 0.025 3.975 15 N -0.938 5.938 16 Si 0.930 3.070 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.240 1.240 20 C 0.129 3.871 21 C 0.062 3.938 22 N -0.541 5.541 23 C 0.011 3.989 24 C 0.068 3.932 25 O -0.402 6.402 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.037 0.963 40 H 0.048 0.952 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.038 0.962 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.114 0.886 50 H 0.062 0.938 51 H 0.121 0.879 52 H 0.094 0.906 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 4.211 -13.378 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C -0.113 4.113 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.182 4.182 7 C -0.224 4.224 8 C 0.312 3.688 9 O -0.464 6.464 10 N -0.325 5.325 11 C 0.098 3.902 12 C -0.574 4.574 13 H 0.049 0.951 14 C -0.174 4.174 15 N -0.577 5.577 16 Si 0.753 3.247 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.163 1.163 20 C 0.005 3.995 21 C -0.067 4.067 22 N -0.267 5.267 23 C -0.117 4.117 24 C -0.009 4.009 25 O -0.321 6.321 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.103 0.897 48 H 0.081 0.919 49 H 0.132 0.868 50 H 0.080 0.920 51 H 0.139 0.861 52 H 0.112 0.888 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.952 4.406 -13.516 14.248 hybrid contribution -1.310 -0.097 0.846 1.562 sum -0.357 4.309 -12.670 13.387 Atomic orbital electron populations 1.24043 0.95913 1.02635 1.00441 1.22932 0.96152 0.97933 1.00404 1.20619 0.96940 0.96983 0.96732 1.21325 0.97610 0.91512 1.01593 1.20626 0.94727 0.98563 0.96404 1.22883 0.99079 0.97880 0.98352 1.23922 1.01788 0.97577 0.99143 1.20900 0.83528 0.86462 0.77949 1.90579 1.28031 1.82367 1.45444 1.47959 1.25192 1.14604 1.44785 1.19655 0.82341 0.97202 0.90955 1.21416 0.94160 1.44926 0.96895 0.95099 1.25693 1.03512 0.93968 0.94261 1.70057 1.34266 1.48460 1.04926 0.85975 0.79469 0.80065 0.79178 1.18556 1.21109 1.16316 1.21160 0.96671 0.83145 0.98482 1.22221 0.95500 0.89367 0.99621 1.62130 1.57901 1.03687 1.02996 1.22906 0.98592 0.97244 0.92924 1.22724 0.99268 0.89415 0.89493 1.87944 1.86747 1.41999 1.15379 1.22793 0.98693 0.93228 0.86449 1.22857 0.99160 0.94551 0.94420 0.88813 0.86765 0.85594 0.91619 0.89832 0.89252 0.88265 0.90434 0.90975 0.88790 0.86252 0.94495 0.93436 0.92331 0.91136 0.91615 0.90982 0.94828 0.94394 0.89725 0.91916 0.86756 0.91990 0.86137 0.88751 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.26 14.32 67.78 0.97 -3.29 16 2 C -0.16 -3.67 9.03 25.65 0.23 -3.43 16 3 C -0.08 -2.07 4.93 29.85 0.15 -1.92 16 4 C -0.10 -3.37 1.34 -11.54 -0.02 -3.38 16 5 C -0.07 -2.01 4.78 29.85 0.14 -1.87 16 6 C -0.16 -5.68 9.08 25.65 0.23 -5.45 16 7 C -0.19 -5.65 14.31 67.78 0.97 -4.68 16 8 C 0.52 20.59 5.89 87.66 0.52 21.11 16 9 O -0.58 -24.98 15.79 -3.02 -0.05 -25.03 16 10 N -0.60 -24.00 2.46 -826.18 -2.03 -26.03 16 11 C 0.22 9.42 3.77 85.63 0.32 9.74 16 12 C -0.54 -28.17 9.55 25.60 0.24 -27.92 16 13 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 14 C 0.03 1.34 5.47 84.65 0.46 1.80 16 15 N -0.94 -55.01 13.96 21.45 0.30 -54.71 16 16 Si 0.93 39.45 27.59 68.60 1.89 41.35 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.24 -9.16 6.39 99.48 0.64 -8.52 16 20 C 0.13 4.81 5.32 86.38 0.46 5.27 16 21 C 0.06 1.94 5.28 86.30 0.46 2.40 16 22 N -0.54 -14.97 4.73 -895.23 -4.23 -19.20 16 23 C 0.01 0.30 5.44 86.31 0.47 0.77 16 24 C 0.07 1.51 7.01 72.02 0.50 2.02 16 25 O -0.40 -9.58 10.83 -148.98 -1.61 -11.19 16 26 C 0.07 1.28 7.01 72.01 0.50 1.78 16 27 C 0.02 0.41 5.64 86.31 0.49 0.89 16 28 H 0.09 2.07 7.84 -2.91 -0.02 2.05 16 29 H 0.11 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.13 2.53 6.87 -2.91 -0.02 2.51 16 31 H 0.07 1.84 7.25 -2.38 -0.02 1.82 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 3.50 6.20 -2.38 -0.01 3.48 16 34 H 0.10 2.44 6.21 -2.39 -0.01 2.42 16 35 H 0.08 2.38 7.69 -2.39 -0.02 2.36 16 36 H 0.07 2.95 7.75 -2.91 -0.02 2.92 16 37 H 0.09 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.12 2.91 7.86 -2.91 -0.02 2.88 16 39 H 0.04 1.54 7.04 -2.39 -0.02 1.53 16 40 H 0.05 1.92 5.26 -2.39 -0.01 1.90 16 41 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 42 H 0.07 2.72 6.45 -2.39 -0.02 2.70 16 43 H 0.07 2.63 7.50 -2.39 -0.02 2.61 16 44 H 0.07 2.33 8.04 -2.38 -0.02 2.32 16 45 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 46 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 2.36 6.38 -2.39 -0.02 2.34 16 48 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 51 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 52 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 53 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -65.25 418.13 2.16 -63.09 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: 0.78 Total: 37.89 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 7.11 Total: -6.18 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -5.96 Total: -99.94 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -1.66 Total: -36.21 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.89 Total: 41.35 kcal Total: -65.25 2.16 -63.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268252200.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.015 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds