Wall clock time and date at job start Tue Mar 31 2020 20:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47132 * 2 1 4 4 C 1.52996 * 109.47416 * 239.99514 * 2 1 3 5 5 C 1.53001 * 109.47130 * 119.99555 * 2 1 3 6 6 C 1.50697 * 109.47168 * 60.00157 * 5 2 1 7 7 O 1.21289 * 120.00065 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00573 * 179.97438 * 6 5 2 9 9 C 1.47430 * 125.64699 * 359.97438 * 8 6 5 10 10 C 1.54905 * 104.83254 * 155.89304 * 9 8 6 11 11 C 1.55156 * 101.58454 * 37.01012 * 10 9 8 12 12 C 1.47023 * 125.65235 * 180.02562 * 8 6 5 13 13 H 1.08994 * 110.00719 * 300.52451 * 12 8 6 14 14 C 1.50700 * 109.88259 * 61.62165 * 12 8 6 15 15 O 1.21279 * 120.00066 * 24.75553 * 14 12 8 16 16 N 1.34782 * 119.99497 * 204.75575 * 14 12 8 17 17 C 1.46502 * 119.99367 * 184.94523 * 16 14 12 18 18 C 1.53003 * 109.46914 * 180.68978 * 17 16 14 19 19 C 1.50702 * 115.54657 * 294.71929 * 18 17 16 20 20 H 1.07996 * 120.00069 * 92.88267 * 19 18 17 21 21 C 1.37876 * 119.99923 * 272.60158 * 19 18 17 22 22 N 1.31513 * 119.99983 * 6.53112 * 21 19 18 23 23 Si 1.86797 * 120.00283 * 186.53602 * 21 19 18 24 24 H 1.48496 * 109.47661 * 89.99689 * 23 21 19 25 25 H 1.48496 * 109.47359 * 210.00017 * 23 21 19 26 26 H 1.48501 * 109.46778 * 330.00048 * 23 21 19 27 27 C 1.53003 * 117.49702 * 80.38502 * 18 17 16 28 28 C 1.52993 * 117.49902 * 149.04656 * 18 17 16 29 29 H 1.09005 * 109.47524 * 300.00225 * 1 2 3 30 30 H 1.09003 * 109.47522 * 60.00322 * 1 2 3 31 31 H 1.08999 * 109.47316 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47333 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47003 * 299.99513 * 3 2 1 34 34 H 1.08996 * 109.47361 * 59.99462 * 3 2 1 35 35 H 1.08997 * 109.47389 * 300.00319 * 4 2 1 36 36 H 1.09009 * 109.47011 * 59.99838 * 4 2 1 37 37 H 1.08996 * 109.47577 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47790 * 300.00268 * 5 2 1 39 39 H 1.09002 * 109.47621 * 179.97438 * 5 2 1 40 40 H 1.09000 * 110.36303 * 37.05509 * 9 8 6 41 41 H 1.08999 * 110.45878 * 274.78502 * 9 8 6 42 42 H 1.08999 * 111.00464 * 278.93658 * 10 9 8 43 43 H 1.09002 * 111.00126 * 155.09034 * 10 9 8 44 44 H 1.09001 * 110.72108 * 206.13245 * 11 10 9 45 45 H 1.08996 * 110.86752 * 82.92956 * 11 10 9 46 46 H 0.96994 * 120.00390 * 4.94625 * 16 14 12 47 47 H 1.08994 * 109.47357 * 60.69352 * 17 16 14 48 48 H 1.09006 * 109.47114 * 300.68435 * 17 16 14 49 49 H 0.97000 * 120.00551 * 185.07753 * 22 21 19 50 50 H 1.09007 * 117.49535 * 215.00144 * 27 18 17 51 51 H 1.08996 * 117.50145 * 0.02766 * 27 18 17 52 52 H 1.09001 * 117.50262 * 359.97339 * 28 18 17 53 53 H 1.09001 * 117.49749 * 144.97634 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 6 1.5377 -2.1420 1.2494 7 8 0.8400 -2.5386 0.3400 8 7 1.8636 -2.9720 2.2599 9 6 2.7003 -2.6230 3.4226 10 6 2.2767 -3.6203 4.5296 11 6 2.0317 -4.9130 3.7072 12 6 1.4446 -4.3757 2.3850 13 1 0.3568 -4.4394 2.4097 14 6 1.9785 -5.1752 1.2246 15 8 2.9695 -4.8002 0.6346 16 7 1.3546 -6.3072 0.8424 17 6 1.9331 -7.1415 -0.2138 18 6 1.0258 -8.3476 -0.4653 19 6 0.9047 -9.3199 0.6797 20 1 0.1024 -9.2147 1.3949 21 6 1.8149 -10.3471 0.8109 22 7 2.8607 -10.4046 0.0155 23 14 1.5627 -11.6574 2.1181 24 1 0.7607 -12.7723 1.5534 25 1 2.8822 -12.1728 2.5635 26 1 0.8445 -11.0685 3.2769 27 6 -0.2092 -8.1317 -1.3425 28 6 0.9869 -8.9186 -1.8842 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.6766 -0.2074 2.1393 39 1 3.1300 -0.7216 1.2492 40 1 2.5023 -1.5988 3.7387 41 1 3.7563 -2.7479 3.1832 42 1 1.3618 -3.2916 5.0224 43 1 3.0787 -3.7639 5.2537 44 1 1.3157 -5.5614 4.2122 45 1 2.9678 -5.4415 3.5266 46 1 0.5226 -6.5693 1.2665 47 1 2.9194 -7.4872 0.0956 48 1 2.0234 -6.5575 -1.1297 49 1 3.4611 -11.1653 0.0578 50 1 -1.1092 -8.6931 -1.0913 51 1 -0.3750 -7.1307 -1.7406 52 1 1.6074 -8.4348 -2.6386 53 1 0.8742 -9.9976 -1.9895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431184350.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:19 Heat of formation + Delta-G solvation = -78.892579 kcal Electronic energy + Delta-G solvation = -30850.109240 eV Core-core repulsion = 26914.181994 eV Total energy + Delta-G solvation = -3935.927246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78661 -40.37629 -38.90558 -38.14552 -37.07303 -35.00683 -33.98304 -32.89640 -30.97492 -29.06092 -28.13350 -28.06066 -28.01127 -27.08870 -24.70220 -23.05816 -22.51603 -21.86131 -21.35911 -20.32318 -19.48312 -18.57905 -18.22966 -17.95476 -16.93457 -16.68355 -16.58149 -16.14744 -16.09687 -15.66736 -15.44719 -15.24040 -15.14822 -14.89604 -14.43552 -14.29589 -14.13926 -13.75511 -13.65354 -13.51359 -13.28246 -13.02401 -13.01401 -12.87090 -12.78076 -12.69165 -12.63935 -12.36895 -12.22018 -12.19564 -12.10520 -11.99516 -11.78630 -11.60477 -11.55107 -11.52358 -10.98283 -10.86646 -10.48855 -10.46169 -10.13918 -9.88385 -9.59561 -8.11490 -6.25679 1.43516 1.45209 1.53224 1.54035 1.71447 1.99622 2.41116 2.46956 3.17018 3.40487 3.46886 3.60379 3.72887 3.82659 3.87416 3.92502 4.10051 4.18364 4.20925 4.25968 4.48042 4.52388 4.56681 4.58706 4.59848 4.64186 4.67495 4.75574 4.82259 4.83312 4.87108 4.90039 4.92695 4.96064 4.97369 5.06424 5.08526 5.16241 5.19888 5.21602 5.25525 5.31906 5.39849 5.51059 5.52092 5.53695 5.63175 5.64353 5.75459 6.33784 6.53253 6.73316 6.82389 7.24791 7.34775 7.44669 8.97078 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.003122 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.274058 B = 8965.955045 C =10149.739231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.134 4.134 4 C -0.152 4.152 5 C -0.117 4.117 6 C 0.519 3.481 7 O -0.565 6.565 8 N -0.606 5.606 9 C 0.091 3.909 10 C -0.114 4.114 11 C -0.119 4.119 12 C 0.121 3.879 13 H 0.102 0.898 14 C 0.498 3.502 15 O -0.592 6.592 16 N -0.697 5.697 17 C 0.185 3.815 18 C 0.009 3.991 19 C -0.503 4.503 20 H 0.067 0.933 21 C 0.024 3.976 22 N -0.909 5.909 23 Si 0.953 3.047 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.259 1.259 27 C -0.180 4.180 28 C -0.156 4.156 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.060 0.940 46 H 0.408 0.592 47 H 0.029 0.971 48 H 0.019 0.981 49 H 0.259 0.741 50 H 0.090 0.910 51 H 0.078 0.922 52 H 0.065 0.935 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 21.805 11.554 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.053 4.053 3 C -0.191 4.191 4 C -0.209 4.209 5 C -0.157 4.157 6 C 0.310 3.690 7 O -0.444 6.444 8 N -0.340 5.340 9 C -0.030 4.030 10 C -0.152 4.152 11 C -0.158 4.158 12 C 0.013 3.987 13 H 0.119 0.881 14 C 0.284 3.716 15 O -0.473 6.473 16 N -0.347 5.347 17 C 0.060 3.940 18 C 0.009 3.991 19 C -0.541 4.541 20 H 0.085 0.915 21 C -0.177 4.177 22 N -0.546 5.546 23 Si 0.779 3.221 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.183 1.183 27 C -0.217 4.217 28 C -0.195 4.195 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.079 0.921 46 H 0.244 0.756 47 H 0.048 0.952 48 H 0.038 0.962 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.096 0.904 52 H 0.083 0.917 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.360 21.842 10.601 24.394 hybrid contribution 0.059 -1.697 -0.244 1.715 sum -2.301 20.146 10.357 22.769 Atomic orbital electron populations 1.22028 0.94503 1.02367 1.01655 1.20311 0.96066 0.95795 0.93079 1.21825 1.01236 0.93191 1.02834 1.22051 0.99922 1.01081 0.97849 1.21806 1.02756 0.89701 1.01414 1.21148 0.79440 0.88714 0.79653 1.90607 1.39963 1.78164 1.35692 1.48540 1.51882 1.09361 1.24225 1.22672 0.94457 1.01726 0.84154 1.22817 1.04386 0.91643 0.96343 1.22651 1.01938 0.99700 0.91490 1.21573 1.00632 0.82589 0.93857 0.88052 1.21585 0.83515 0.81069 0.85389 1.90600 1.28793 1.70479 1.57413 1.45827 1.26986 1.22996 1.38852 1.20492 0.96102 0.89568 0.87810 1.19064 0.94654 0.94016 0.91399 1.20653 1.11693 1.11487 1.10254 0.91525 1.25739 0.93954 1.00016 0.97945 1.70161 1.13722 1.30029 1.40699 0.85632 0.77056 0.79497 0.79950 1.20416 1.21803 1.18322 1.23001 0.93075 0.99663 1.05997 1.22401 1.01161 0.98017 0.97889 0.91653 0.92979 0.92900 0.92090 0.92294 0.90730 0.93644 0.92711 0.93640 0.85686 0.88161 0.86698 0.91880 0.87966 0.87153 0.87031 0.92096 0.75640 0.95222 0.96237 0.93203 0.89115 0.90365 0.91686 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.18 71.98 0.59 -2.64 16 2 C -0.05 -1.07 0.77 -52.18 -0.04 -1.11 16 3 C -0.13 -1.86 8.47 71.98 0.61 -1.25 16 4 C -0.15 -4.12 8.18 71.98 0.59 -3.54 16 5 C -0.12 -2.25 3.77 29.85 0.11 -2.13 16 6 C 0.52 14.88 6.82 87.66 0.60 15.48 16 7 O -0.57 -21.16 11.18 -3.06 -0.03 -21.19 16 8 N -0.61 -15.54 2.76 -792.18 -2.18 -17.72 16 9 C 0.09 1.44 6.69 86.85 0.58 2.02 16 10 C -0.11 -1.40 7.08 31.98 0.23 -1.17 16 11 C -0.12 -2.50 6.47 31.78 0.21 -2.29 16 12 C 0.12 3.46 3.25 44.60 0.15 3.61 16 13 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 14 C 0.50 20.18 6.18 87.66 0.54 20.72 16 15 O -0.59 -29.02 16.41 -3.03 -0.05 -29.06 16 16 N -0.70 -29.27 5.47 -463.04 -2.53 -31.80 16 17 C 0.18 9.18 5.51 86.38 0.48 9.65 16 18 C 0.01 0.46 1.41 -52.93 -0.07 0.39 16 19 C -0.50 -26.01 8.66 25.60 0.22 -25.79 16 20 H 0.07 3.29 7.82 -2.91 -0.02 3.26 16 21 C 0.02 1.28 5.37 84.65 0.45 1.73 16 22 N -0.91 -51.93 12.83 21.45 0.28 -51.66 16 23 Si 0.95 41.80 29.55 68.60 2.03 43.82 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 27 C -0.18 -7.77 9.96 30.62 0.30 -7.46 16 28 C -0.16 -7.56 9.30 30.62 0.28 -7.28 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.53 5.51 -2.39 -0.01 1.51 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.04 1.63 5.51 -2.39 -0.01 1.62 16 36 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.13 1.47 7.85 -2.39 -0.02 1.46 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.11 0.97 7.48 -2.39 -0.02 0.95 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.06 1.57 7.84 -2.39 -0.02 1.56 16 46 H 0.41 15.31 8.39 -92.71 -0.78 14.53 16 47 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.02 1.01 8.09 -2.38 -0.02 0.99 16 49 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 50 H 0.09 3.70 8.14 -2.38 -0.02 3.68 16 51 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 52 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 53 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -75.19 418.94 3.42 -71.77 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: 0.10 Total: 36.90 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.82 Total: -1.05 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.44 Total: -101.18 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.08 Total: -50.26 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -75.19 3.42 -71.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431184350.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.126 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds