Wall clock time and date at job start Tue Mar 31 2020 19:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33406 * 119.99888 * 2 1 4 4 C 1.46333 * 120.00272 * 180.02562 * 3 2 1 5 5 C 1.35178 * 119.99976 * 246.53661 * 4 3 2 6 6 C 1.46261 * 120.00386 * 6.94329 * 5 4 3 7 7 O 1.21723 * 119.99552 * 357.13370 * 6 5 4 8 8 N 1.34769 * 120.00202 * 177.14281 * 6 5 4 9 9 C 1.46498 * 120.00296 * 359.97438 * 8 6 5 10 10 C 1.50697 * 109.47403 * 270.00730 * 9 8 6 11 11 H 1.08000 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00168 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99967 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99963 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47198 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47181 * 119.99938 * 14 12 10 17 17 H 1.48501 * 109.47111 * 239.99500 * 14 12 10 18 18 C 1.46503 * 119.99805 * 179.97438 * 8 6 5 19 19 C 1.53006 * 109.46929 * 89.99755 * 18 8 6 20 20 N 1.46905 * 109.47083 * 179.97438 * 19 18 8 21 21 C 1.47016 * 110.99969 * 293.63885 * 20 19 18 22 22 C 1.53097 * 109.25788 * 177.60861 * 21 20 19 23 23 O 1.43019 * 109.25716 * 56.84305 * 22 21 20 24 24 C 1.43013 * 113.73918 * 301.32963 * 23 22 21 25 25 C 1.47005 * 110.99822 * 170.00149 * 20 19 18 26 26 C 1.50703 * 119.99790 * 0.02562 * 3 2 1 27 27 C 1.53000 * 109.47327 * 265.39497 * 26 3 2 28 28 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46744 * 299.99281 * 1 2 3 30 30 H 1.08991 * 109.47523 * 59.99580 * 1 2 3 31 31 H 1.08000 * 120.00345 * 180.02562 * 2 1 3 32 32 H 1.08004 * 120.00193 * 66.52804 * 4 3 2 33 33 H 1.08004 * 119.99807 * 186.94428 * 5 4 3 34 34 H 1.09008 * 109.46949 * 30.00591 * 9 8 6 35 35 H 1.09000 * 109.47341 * 150.00175 * 9 8 6 36 36 H 0.97003 * 120.00133 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47275 * 209.99661 * 18 8 6 38 38 H 1.08997 * 109.47313 * 330.00004 * 18 8 6 39 39 H 1.08998 * 109.47296 * 299.99594 * 19 18 8 40 40 H 1.08997 * 109.46920 * 60.00008 * 19 18 8 41 41 H 1.09009 * 109.50153 * 297.53835 * 21 20 19 42 42 H 1.08998 * 109.51215 * 57.66734 * 21 20 19 43 43 H 1.08993 * 109.50409 * 296.90889 * 22 21 20 44 44 H 1.09005 * 109.53999 * 176.80177 * 22 21 20 45 45 H 1.09002 * 109.50571 * 298.73658 * 24 23 22 46 46 H 1.09000 * 109.54154 * 178.62903 * 24 23 22 47 47 H 1.09001 * 109.50953 * 302.32343 * 25 20 19 48 48 H 1.08997 * 109.51369 * 62.41712 * 25 20 19 49 49 H 1.08996 * 109.47485 * 25.39902 * 26 3 2 50 50 H 1.09004 * 109.46821 * 145.39927 * 26 3 2 51 51 H 1.08996 * 109.47169 * 300.00599 * 27 26 3 52 52 H 1.09004 * 109.46819 * 60.00429 * 27 26 3 53 53 H 1.09001 * 109.47343 * 179.97438 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1553 0.0000 4 6 3.6374 1.1554 -0.0006 5 6 4.3137 1.6214 1.0732 6 6 3.5909 1.9831 2.2922 7 8 2.3760 1.9142 2.3225 8 7 4.2701 2.3929 3.3818 9 6 5.7323 2.4755 3.3454 10 6 6.3209 1.1594 3.7841 11 1 5.6707 0.3431 4.0625 12 6 7.6892 0.9976 3.8309 13 7 8.4809 1.9917 3.4924 14 14 8.4188 -0.6336 4.3753 15 1 7.3233 -1.5818 4.7008 16 1 9.2503 -1.1942 3.2800 17 1 9.2630 -0.4214 5.5785 18 6 3.5460 2.7557 4.6026 19 6 3.3824 1.5170 5.4857 20 7 2.6569 1.8809 6.7102 21 6 3.4536 2.7935 7.5431 22 6 2.6387 3.1933 8.7759 23 8 2.2476 2.0147 9.4854 24 6 1.4695 1.1039 8.7042 25 6 2.2728 0.6829 7.4707 26 6 1.4205 2.4604 0.0006 27 6 1.2652 2.9604 -1.4371 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8898 31 1 2.0471 -0.9353 -0.0004 32 1 4.1771 0.7831 -0.8588 33 1 5.3878 1.7265 1.0309 34 1 6.0584 2.6988 2.3296 35 1 6.0684 3.2656 4.0168 36 1 9.4437 1.8778 3.5250 37 1 4.1067 3.5171 5.1449 38 1 2.5632 3.1467 4.3395 39 1 2.8217 0.7557 4.9435 40 1 4.3652 1.1260 5.7488 41 1 4.3690 2.2926 7.8587 42 1 3.7053 3.6848 6.9684 43 1 1.7500 3.7412 8.4627 44 1 3.2455 3.8245 9.4251 45 1 0.5469 1.5911 8.3889 46 1 1.2307 0.2236 9.3009 47 1 1.6623 0.0336 6.8431 48 1 3.1691 0.1479 7.7844 49 1 0.4351 2.3108 0.4417 50 1 1.9716 3.1979 0.5841 51 1 2.2506 3.1100 -1.8782 52 1 0.7140 2.2229 -2.0206 53 1 0.7197 3.9041 -1.4367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492161920.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:13 Heat of formation + Delta-G solvation = -45.411500 kcal Electronic energy + Delta-G solvation = -30533.070692 eV Core-core repulsion = 26598.595295 eV Total energy + Delta-G solvation = -3934.475398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.62540 -39.14194 -36.93118 -35.83380 -34.66361 -32.64708 -32.08221 -31.15988 -30.97944 -29.70165 -27.31225 -26.89588 -25.65120 -23.95895 -23.22746 -23.00703 -22.44247 -20.90981 -20.18076 -18.50974 -17.14766 -16.88615 -16.52064 -16.21936 -16.08808 -15.47477 -15.09321 -15.00102 -14.71869 -14.63175 -14.33372 -13.97246 -13.91859 -13.58263 -13.24291 -13.11185 -12.84474 -12.72363 -12.48996 -12.27018 -12.15351 -12.04976 -11.87815 -11.73743 -11.56214 -11.35214 -11.32730 -11.20764 -11.04290 -10.82677 -10.61876 -10.58166 -10.44785 -10.35741 -9.99790 -9.79045 -9.60527 -9.17335 -8.94315 -8.59616 -8.20228 -8.01492 -7.67237 -6.23371 -4.30249 1.71128 2.67044 3.16816 3.26089 3.29627 3.64799 3.87427 4.09277 4.22904 4.33670 4.93321 5.08350 5.09309 5.10385 5.15300 5.20147 5.24134 5.33669 5.40552 5.47070 5.52606 5.54656 5.60286 5.65872 5.68575 5.75573 5.82776 5.86440 5.91582 5.94754 5.96801 6.02555 6.05689 6.10146 6.17849 6.23967 6.31980 6.35632 6.50968 6.56687 6.66960 6.70322 6.82064 7.07787 7.09220 7.15169 7.16550 7.18943 7.27120 7.55577 7.71946 8.00841 8.32292 8.75980 9.04300 9.37855 10.83149 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.006895 B = 0.004476 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4059.798465 B = 6254.310326 C = 9063.109179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.179 4.179 3 C -0.057 4.057 4 C -0.069 4.069 5 C -0.175 4.175 6 C 0.540 3.460 7 O -0.554 6.554 8 N -0.592 5.592 9 C 0.237 3.763 10 C -0.533 4.533 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.283 1.283 18 C 0.133 3.867 19 C 0.044 3.956 20 N -0.535 5.535 21 C 0.013 3.987 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.066 3.934 25 C 0.018 3.982 26 C -0.067 4.067 27 C -0.148 4.148 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.040 0.960 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.042 0.958 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.051 0.949 52 H 0.049 0.951 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 1.034 -0.104 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.197 4.197 3 C -0.057 4.057 4 C -0.089 4.089 5 C -0.195 4.195 6 C 0.331 3.669 7 O -0.436 6.436 8 N -0.322 5.322 9 C 0.117 3.883 10 C -0.571 4.571 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.209 1.209 18 C 0.009 3.991 19 C -0.084 4.084 20 N -0.261 5.261 21 C -0.115 4.115 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.011 4.011 25 C -0.110 4.110 26 C -0.104 4.104 27 C -0.206 4.206 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.071 0.929 52 H 0.069 0.931 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.886 1.290 -0.019 12.951 hybrid contribution 1.736 -1.477 0.337 2.304 sum -11.150 -0.187 0.317 11.156 Atomic orbital electron populations 1.20689 0.93531 1.01085 1.01402 1.22913 0.95474 0.96591 1.04745 1.20219 0.92256 0.95201 0.97991 1.22310 0.93476 0.95843 0.97235 1.23431 1.01361 1.01653 0.93052 1.18297 0.86876 0.77405 0.84312 1.90738 1.13661 1.54922 1.84318 1.48094 1.09547 1.63921 1.10670 1.19482 0.72775 0.97548 0.98510 1.21525 0.91487 0.98374 1.45745 0.92140 1.24922 0.96995 0.96786 0.95045 1.69925 1.04145 1.31137 1.47732 0.86524 0.79236 0.83759 0.78482 1.19775 1.20731 1.20877 1.21105 0.97248 0.95505 0.85277 1.22542 0.97474 0.98807 0.89624 1.62192 1.43011 1.14972 1.05888 1.22844 0.95545 0.98267 0.94857 1.22672 0.98463 0.87175 0.92878 1.87951 1.72276 1.31860 1.38696 1.22639 0.93537 0.93261 0.91668 1.22737 0.99817 0.92782 0.95670 1.20440 0.99928 0.94543 0.95506 1.21789 1.01359 1.00260 0.97171 0.93061 0.91753 0.92439 0.88067 0.85618 0.84228 0.94190 0.94812 0.92566 0.91459 0.90419 0.90876 0.92785 0.93628 0.89295 0.92422 0.88662 0.92402 0.88798 0.89822 0.93987 0.91345 0.91114 0.92937 0.93142 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 8.85 36.01 0.32 -1.07 16 2 C -0.18 -2.66 9.98 -35.99 -0.36 -3.02 16 3 C -0.06 -0.89 3.02 -103.06 -0.31 -1.20 16 4 C -0.07 -1.11 9.65 -37.42 -0.36 -1.47 16 5 C -0.17 -3.25 9.23 -37.45 -0.35 -3.59 16 6 C 0.54 10.95 7.20 -13.04 -0.09 10.86 16 7 O -0.55 -11.55 11.82 5.17 0.06 -11.48 16 8 N -0.59 -12.10 2.46 -176.76 -0.43 -12.54 16 9 C 0.24 5.44 4.93 -5.20 -0.03 5.41 16 10 C -0.53 -13.42 8.92 -34.44 -0.31 -13.73 16 11 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -24.03 13.29 55.43 0.74 -23.30 16 14 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 C 0.13 2.42 5.39 -4.04 -0.02 2.40 16 19 C 0.04 0.78 5.28 -3.82 -0.02 0.76 16 20 N -0.53 -8.21 4.73 -234.30 -1.11 -9.31 16 21 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 22 C 0.07 0.79 7.01 37.21 0.26 1.05 16 23 O -0.39 -5.32 10.83 -35.23 -0.38 -5.70 16 24 C 0.07 0.79 7.01 37.21 0.26 1.05 16 25 C 0.02 0.25 5.64 -3.71 -0.02 0.23 16 26 C -0.07 -1.00 4.41 -27.88 -0.12 -1.12 16 27 C -0.15 -1.79 9.89 37.16 0.37 -1.42 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.87 7.42 -51.93 -0.39 0.49 16 30 H 0.06 0.65 7.78 -51.93 -0.40 0.24 16 31 H 0.10 1.48 8.05 -52.49 -0.42 1.06 16 32 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.14 2.70 6.17 -52.48 -0.32 2.38 16 34 H 0.04 0.95 6.06 -51.92 -0.31 0.63 16 35 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.07 1.17 6.27 -51.93 -0.33 0.84 16 38 H 0.08 1.44 7.42 -51.93 -0.39 1.05 16 39 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 40 H 0.05 1.09 7.24 -51.93 -0.38 0.72 16 41 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.09 1.20 6.38 -51.93 -0.33 0.87 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 50 H 0.07 1.20 6.67 -51.93 -0.35 0.85 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.05 0.56 7.82 -51.93 -0.41 0.15 16 53 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 416.01 15.07 6.27 6.27 Total: -1.00 -28.10 416.01 -10.13 -38.23 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -9.35 Total: 5.55 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.90 Total: -3.10 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.81 Total: -45.15 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.32 Total: -17.19 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -28.10 -10.13 -38.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492161920.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.186 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds