Wall clock time and date at job start Tue Mar 31 2020 19:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33406 * 119.99888 * 2 1 4 4 C 1.46333 * 120.00272 * 180.02562 * 3 2 1 5 5 C 1.35178 * 119.99976 * 246.53661 * 4 3 2 6 6 C 1.46261 * 120.00386 * 6.94329 * 5 4 3 7 7 O 1.21723 * 119.99552 * 357.13370 * 6 5 4 8 8 N 1.34769 * 120.00202 * 177.14281 * 6 5 4 9 9 C 1.46498 * 120.00296 * 359.97438 * 8 6 5 10 10 C 1.50697 * 109.47403 * 270.00730 * 9 8 6 11 11 H 1.08000 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00168 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99967 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99963 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47198 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47181 * 119.99938 * 14 12 10 17 17 H 1.48501 * 109.47111 * 239.99500 * 14 12 10 18 18 C 1.46503 * 119.99805 * 179.97438 * 8 6 5 19 19 C 1.53006 * 109.46929 * 89.99755 * 18 8 6 20 20 N 1.46905 * 109.47083 * 179.97438 * 19 18 8 21 21 C 1.47016 * 110.99969 * 293.63885 * 20 19 18 22 22 C 1.53097 * 109.25788 * 177.60861 * 21 20 19 23 23 O 1.43019 * 109.25716 * 56.84305 * 22 21 20 24 24 C 1.43013 * 113.73918 * 301.32963 * 23 22 21 25 25 C 1.47005 * 110.99822 * 170.00149 * 20 19 18 26 26 C 1.50703 * 119.99790 * 0.02562 * 3 2 1 27 27 C 1.53000 * 109.47327 * 265.39497 * 26 3 2 28 28 H 1.09005 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46744 * 299.99281 * 1 2 3 30 30 H 1.08991 * 109.47523 * 59.99580 * 1 2 3 31 31 H 1.08000 * 120.00345 * 180.02562 * 2 1 3 32 32 H 1.08004 * 120.00193 * 66.52804 * 4 3 2 33 33 H 1.08004 * 119.99807 * 186.94428 * 5 4 3 34 34 H 1.09008 * 109.46949 * 30.00591 * 9 8 6 35 35 H 1.09000 * 109.47341 * 150.00175 * 9 8 6 36 36 H 0.97003 * 120.00133 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47275 * 209.99661 * 18 8 6 38 38 H 1.08997 * 109.47313 * 330.00004 * 18 8 6 39 39 H 1.08998 * 109.47296 * 299.99594 * 19 18 8 40 40 H 1.08997 * 109.46920 * 60.00008 * 19 18 8 41 41 H 1.09009 * 109.50153 * 297.53835 * 21 20 19 42 42 H 1.08998 * 109.51215 * 57.66734 * 21 20 19 43 43 H 1.08993 * 109.50409 * 296.90889 * 22 21 20 44 44 H 1.09005 * 109.53999 * 176.80177 * 22 21 20 45 45 H 1.09002 * 109.50571 * 298.73658 * 24 23 22 46 46 H 1.09000 * 109.54154 * 178.62903 * 24 23 22 47 47 H 1.09001 * 109.50953 * 302.32343 * 25 20 19 48 48 H 1.08997 * 109.51369 * 62.41712 * 25 20 19 49 49 H 1.08996 * 109.47485 * 25.39902 * 26 3 2 50 50 H 1.09004 * 109.46821 * 145.39927 * 26 3 2 51 51 H 1.08996 * 109.47169 * 300.00599 * 27 26 3 52 52 H 1.09004 * 109.46819 * 60.00429 * 27 26 3 53 53 H 1.09001 * 109.47343 * 179.97438 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1741 1.1553 0.0000 4 6 3.6374 1.1554 -0.0006 5 6 4.3137 1.6214 1.0732 6 6 3.5909 1.9831 2.2922 7 8 2.3760 1.9142 2.3225 8 7 4.2701 2.3929 3.3818 9 6 5.7323 2.4755 3.3454 10 6 6.3209 1.1594 3.7841 11 1 5.6707 0.3431 4.0625 12 6 7.6892 0.9976 3.8309 13 7 8.4809 1.9917 3.4924 14 14 8.4188 -0.6336 4.3753 15 1 7.3233 -1.5818 4.7008 16 1 9.2503 -1.1942 3.2800 17 1 9.2630 -0.4214 5.5785 18 6 3.5460 2.7557 4.6026 19 6 3.3824 1.5170 5.4857 20 7 2.6569 1.8809 6.7102 21 6 3.4536 2.7935 7.5431 22 6 2.6387 3.1933 8.7759 23 8 2.2476 2.0147 9.4854 24 6 1.4695 1.1039 8.7042 25 6 2.2728 0.6829 7.4707 26 6 1.4205 2.4604 0.0006 27 6 1.2652 2.9604 -1.4371 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8898 31 1 2.0471 -0.9353 -0.0004 32 1 4.1771 0.7831 -0.8588 33 1 5.3878 1.7265 1.0309 34 1 6.0584 2.6988 2.3296 35 1 6.0684 3.2656 4.0168 36 1 9.4437 1.8778 3.5250 37 1 4.1067 3.5171 5.1449 38 1 2.5632 3.1467 4.3395 39 1 2.8217 0.7557 4.9435 40 1 4.3652 1.1260 5.7488 41 1 4.3690 2.2926 7.8587 42 1 3.7053 3.6848 6.9684 43 1 1.7500 3.7412 8.4627 44 1 3.2455 3.8245 9.4251 45 1 0.5469 1.5911 8.3889 46 1 1.2307 0.2236 9.3009 47 1 1.6623 0.0336 6.8431 48 1 3.1691 0.1479 7.7844 49 1 0.4351 2.3108 0.4417 50 1 1.9716 3.1979 0.5841 51 1 2.2506 3.1100 -1.8782 52 1 0.7140 2.2229 -2.0206 53 1 0.7197 3.9041 -1.4367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492161920.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:12 Heat of formation + Delta-G solvation = -60.554374 kcal Electronic energy + Delta-G solvation = -30533.727337 eV Core-core repulsion = 26598.595295 eV Total energy + Delta-G solvation = -3935.132042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03525 -40.40565 -38.23164 -37.10961 -36.25883 -34.53076 -33.44789 -32.22157 -32.04531 -31.12595 -29.12351 -28.11203 -26.92235 -25.10501 -24.93037 -24.22280 -23.81508 -22.26168 -21.36469 -19.94773 -18.74688 -18.61552 -17.92978 -17.56395 -17.17115 -16.88703 -16.46444 -16.31058 -16.10746 -15.98988 -15.61104 -15.33113 -15.24004 -14.92410 -14.43946 -14.36005 -14.29305 -14.16706 -13.82677 -13.75841 -13.51768 -13.35821 -13.15999 -13.03286 -12.91043 -12.82197 -12.68974 -12.57061 -12.44087 -12.34510 -12.14381 -11.83160 -11.71987 -11.66101 -11.52862 -11.44741 -10.76625 -10.71210 -10.53077 -10.34573 -9.55265 -9.41929 -9.17573 -8.22958 -6.35967 0.31417 1.33704 1.37834 1.43342 1.46892 2.16752 2.37766 2.55613 2.84325 2.98397 3.07070 3.76798 3.87128 3.91519 3.98037 4.00534 4.11529 4.17551 4.18945 4.31760 4.40253 4.41190 4.47284 4.49631 4.56822 4.60074 4.64954 4.69083 4.77302 4.79190 4.81438 4.84283 4.87008 4.89276 4.95640 4.99361 5.02865 5.14124 5.17638 5.20313 5.23195 5.34247 5.46075 5.50100 5.64815 5.76789 5.88501 5.90703 5.95422 6.04237 6.06862 6.14814 6.57110 6.82052 7.31936 7.45939 8.82478 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.006895 B = 0.004476 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4059.798465 B = 6254.310326 C = 9063.109179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.174 4.174 3 C -0.082 4.082 4 C -0.036 4.036 5 C -0.211 4.211 6 C 0.537 3.463 7 O -0.563 6.563 8 N -0.598 5.598 9 C 0.254 3.746 10 C -0.534 4.534 11 H 0.047 0.953 12 C 0.025 3.975 13 N -0.918 5.918 14 Si 0.948 3.052 15 H -0.276 1.276 16 H -0.275 1.275 17 H -0.279 1.279 18 C 0.137 3.863 19 C 0.062 3.938 20 N -0.534 5.534 21 C 0.012 3.988 22 C 0.069 3.931 23 O -0.403 6.403 24 C 0.070 3.930 25 C 0.015 3.985 26 C -0.061 4.061 27 C -0.142 4.142 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.032 0.968 35 H 0.018 0.982 36 H 0.267 0.733 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.028 0.972 49 H 0.065 0.935 50 H 0.043 0.957 51 H 0.052 0.948 52 H 0.063 0.937 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.573 0.374 -0.410 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.192 4.192 3 C -0.082 4.082 4 C -0.056 4.056 5 C -0.232 4.232 6 C 0.330 3.670 7 O -0.446 6.446 8 N -0.329 5.329 9 C 0.133 3.867 10 C -0.572 4.572 11 H 0.066 0.934 12 C -0.176 4.176 13 N -0.558 5.558 14 Si 0.774 3.226 15 H -0.201 1.201 16 H -0.200 1.200 17 H -0.205 1.205 18 C 0.013 3.987 19 C -0.067 4.067 20 N -0.260 5.260 21 C -0.116 4.116 22 C -0.008 4.008 23 O -0.322 6.322 24 C -0.007 4.007 25 C -0.113 4.113 26 C -0.099 4.099 27 C -0.199 4.199 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.172 0.828 33 H 0.145 0.855 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.136 0.864 47 H 0.107 0.893 48 H 0.046 0.954 49 H 0.083 0.917 50 H 0.062 0.938 51 H 0.071 0.929 52 H 0.082 0.918 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.370 0.631 -0.320 14.388 hybrid contribution 2.097 -1.304 0.378 2.498 sum -12.273 -0.673 0.058 12.292 Atomic orbital electron populations 1.20707 0.91806 1.02314 1.01643 1.23189 0.96922 0.96237 1.02901 1.20378 0.92060 0.96043 0.99710 1.22707 0.94081 0.92096 0.96711 1.23248 1.00778 1.05452 0.93700 1.18571 0.86912 0.76939 0.84624 1.90718 1.13857 1.55458 1.84593 1.48059 1.08616 1.64510 1.11678 1.19105 0.74204 0.96045 0.97346 1.21624 0.91557 0.98748 1.45304 0.93446 1.25547 0.97367 0.99470 0.95195 1.70001 1.04433 1.32628 1.48705 0.85661 0.78345 0.80363 0.78242 1.20091 1.20005 1.20523 1.21134 0.97010 0.95823 0.84735 1.22218 0.95811 0.97923 0.90709 1.62232 1.42351 1.15817 1.05558 1.22925 0.95170 0.97818 0.95732 1.22762 0.98874 0.87061 0.92078 1.87938 1.72548 1.32428 1.39314 1.22751 0.93069 0.94043 0.90846 1.22854 0.99657 0.92216 0.96574 1.20359 0.99049 0.93467 0.96993 1.21742 1.01816 1.01145 0.95201 0.91417 0.92848 0.90690 0.87896 0.82793 0.85510 0.95019 0.96364 0.92341 0.90758 0.90377 0.92581 0.95703 0.95498 0.88933 0.91266 0.86586 0.91403 0.86434 0.89264 0.95384 0.91650 0.93805 0.92931 0.91755 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 8.85 71.24 0.63 -1.85 16 2 C -0.17 -4.88 9.98 24.59 0.25 -4.63 16 3 C -0.08 -2.47 3.02 -18.85 -0.06 -2.53 16 4 C -0.04 -1.15 9.65 23.67 0.23 -0.92 16 5 C -0.21 -8.02 9.23 23.65 0.22 -7.80 16 6 C 0.54 22.40 7.20 86.33 0.62 23.02 16 7 O -0.56 -23.86 11.82 -4.42 -0.05 -23.91 16 8 N -0.60 -25.41 2.46 -831.34 -2.04 -27.45 16 9 C 0.25 12.13 4.93 85.63 0.42 12.56 16 10 C -0.53 -27.68 8.92 25.60 0.23 -27.45 16 11 H 0.05 2.55 7.42 -2.91 -0.02 2.53 16 12 C 0.02 1.29 5.46 84.65 0.46 1.75 16 13 N -0.92 -50.24 13.29 21.45 0.28 -49.96 16 14 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 C 0.14 5.14 5.39 86.38 0.47 5.61 16 19 C 0.06 2.32 5.28 86.30 0.46 2.77 16 20 N -0.53 -16.47 4.73 -895.20 -4.23 -20.70 16 21 C 0.01 0.33 5.44 86.31 0.47 0.80 16 22 C 0.07 1.57 7.01 72.01 0.50 2.08 16 23 O -0.40 -10.35 10.83 -148.98 -1.61 -11.96 16 24 C 0.07 1.54 7.01 72.02 0.50 2.05 16 25 C 0.02 0.42 5.64 86.32 0.49 0.90 16 26 C -0.06 -1.78 4.41 29.85 0.13 -1.64 16 27 C -0.14 -3.13 9.89 71.98 0.71 -2.42 16 28 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.05 1.37 7.42 -2.39 -0.02 1.35 16 30 H 0.07 1.47 7.78 -2.39 -0.02 1.45 16 31 H 0.10 2.82 8.05 -2.91 -0.02 2.79 16 32 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.13 5.11 6.17 -2.91 -0.02 5.09 16 34 H 0.03 1.57 6.06 -2.38 -0.01 1.56 16 35 H 0.02 0.92 7.89 -2.39 -0.02 0.90 16 36 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 37 H 0.07 2.66 6.27 -2.39 -0.01 2.64 16 38 H 0.08 2.94 7.42 -2.39 -0.02 2.92 16 39 H 0.06 2.24 8.04 -2.39 -0.02 2.23 16 40 H 0.02 1.06 7.24 -2.39 -0.02 1.04 16 41 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 2.49 6.38 -2.39 -0.02 2.48 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.09 2.30 8.09 -2.39 -0.02 2.28 16 48 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 1.90 6.34 -2.39 -0.02 1.89 16 50 H 0.04 1.50 6.67 -2.38 -0.02 1.48 16 51 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.06 1.24 7.82 -2.38 -0.02 1.23 16 53 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -60.71 416.01 1.97 -58.74 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.87 Total: 28.69 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 6.73 Total: 2.29 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -5.99 Total: -98.11 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.67 Total: -35.87 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -60.71 1.97 -58.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492161920.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.815 kcal (2) G-P(sol) polarization free energy of solvation -60.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds