Wall clock time and date at job start Tue Mar 31 2020 19:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47257 * 122.25171 * 3 2 1 5 5 C 1.53001 * 109.47367 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47184 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.46813 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46624 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73045 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 359.72768 * 10 8 7 12 12 C 1.50703 * 109.47219 * 89.99688 * 11 10 8 13 13 H 1.07996 * 119.99587 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00012 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99655 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99994 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.46889 * 90.00281 * 16 14 12 18 18 H 1.48510 * 109.46825 * 210.00042 * 16 14 12 19 19 H 1.48494 * 109.47200 * 329.99914 * 16 14 12 20 20 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 21 21 C 1.52996 * 109.47198 * 90.00083 * 20 10 8 22 22 N 1.46902 * 109.46980 * 179.97438 * 21 20 10 23 23 C 1.47015 * 111.00009 * 293.63325 * 22 21 20 24 24 C 1.53100 * 109.25969 * 177.60615 * 23 22 21 25 25 O 1.43020 * 109.25371 * 56.84894 * 24 23 22 26 26 C 1.43015 * 113.74045 * 301.33009 * 25 24 23 27 27 C 1.47013 * 110.99990 * 170.00210 * 22 21 20 28 28 H 4.44651 * 5.63450 * 180.02562 * 4 1 2 29 29 H 1.09007 * 109.46855 * 2.25158 * 3 2 1 30 30 H 1.09001 * 109.47063 * 242.25074 * 3 2 1 31 31 H 1.08998 * 109.47353 * 59.99920 * 4 3 2 32 32 H 1.09006 * 109.47395 * 300.00176 * 4 3 2 33 33 H 1.08998 * 109.47065 * 59.99602 * 5 4 3 34 34 H 1.09001 * 109.46892 * 299.99866 * 5 4 3 35 35 H 1.09001 * 109.46902 * 60.00345 * 6 5 4 36 36 H 1.08993 * 109.47243 * 300.00020 * 6 5 4 37 37 H 1.09001 * 109.46782 * 60.00667 * 7 6 5 38 38 H 1.08993 * 109.47555 * 300.00224 * 7 6 5 39 39 H 1.08998 * 109.47416 * 209.99869 * 11 10 8 40 40 H 1.09008 * 109.47058 * 330.00468 * 11 10 8 41 41 H 0.97008 * 119.99482 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.46865 * 210.00034 * 20 10 8 43 43 H 1.08998 * 109.47058 * 329.99547 * 20 10 8 44 44 H 1.08997 * 109.47172 * 299.99762 * 21 20 10 45 45 H 1.08998 * 109.47554 * 59.99767 * 21 20 10 46 46 H 1.09006 * 109.50603 * 297.54506 * 23 22 21 47 47 H 1.09003 * 109.50663 * 57.67164 * 23 22 21 48 48 H 1.08994 * 109.50511 * 296.91476 * 24 23 22 49 49 H 1.08995 * 109.54235 * 176.80143 * 24 23 22 50 50 H 1.08996 * 109.50161 * 298.73680 * 26 25 24 51 51 H 1.09002 * 109.54009 * 178.63053 * 26 25 24 52 52 H 1.08999 * 109.50620 * 302.32609 * 27 22 21 53 53 H 1.08999 * 109.51226 * 62.41126 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1556 0.7706 -1.2199 5 6 4.6856 0.7708 -1.2203 6 6 5.1953 1.5413 -2.4399 7 6 6.7253 1.5420 -2.4398 8 6 7.2272 2.3004 -3.6414 9 8 6.4389 2.7878 -4.4237 10 7 8.5523 2.4320 -3.8500 11 6 9.5046 1.8428 -2.9054 12 6 9.8322 0.4358 -3.3342 13 1 9.3764 0.0217 -4.2213 14 6 10.7131 -0.3232 -2.5933 15 7 10.9994 -1.5510 -2.9678 16 14 11.5000 0.3923 -1.0576 17 1 10.6441 0.0986 0.1198 18 1 12.8404 -0.2154 -0.8591 19 1 11.6410 1.8624 -1.2127 20 6 9.0403 3.1642 -5.0213 21 6 9.2090 4.6425 -4.6648 22 7 9.6989 5.3765 -5.8391 23 6 11.0605 4.9520 -6.1956 24 6 11.5079 5.6965 -7.4563 25 8 11.4227 7.1056 -7.2271 26 6 10.1102 7.5539 -6.8783 27 6 9.6487 6.8281 -5.6118 28 1 -1.0502 0.0001 0.0002 29 1 3.0097 -1.0261 -0.0404 30 1 3.0091 0.4793 0.9095 31 1 2.7919 1.7973 -1.1796 32 1 2.7925 0.2920 -2.1294 33 1 5.0490 -0.2560 -1.2608 34 1 5.0491 1.2492 -0.3108 35 1 4.8319 2.5682 -2.3987 36 1 4.8318 1.0634 -3.3495 37 1 7.0890 0.5153 -2.4808 38 1 7.0885 2.0201 -1.5302 39 1 10.4167 2.4394 -2.8892 40 1 9.0639 1.8255 -1.9085 41 1 11.6189 -2.0851 -2.4463 42 1 10.0009 2.7535 -5.3322 43 1 8.3226 3.0664 -5.8358 44 1 8.2484 5.0532 -4.3538 45 1 9.9267 4.7402 -3.8502 46 1 11.7404 5.1835 -5.3755 47 1 11.0694 3.8784 -6.3844 48 1 10.8603 5.4234 -8.2893 49 1 12.5375 5.4278 -7.6924 50 1 9.4220 7.3348 -7.6946 51 1 10.1284 8.6284 -6.6960 52 1 8.6269 7.1242 -5.3745 53 1 10.3053 7.0896 -4.7820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780546111.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:15 Heat of formation + Delta-G solvation = -62.036834 kcal Electronic energy + Delta-G solvation = -29101.100186 eV Core-core repulsion = 25165.903860 eV Total energy + Delta-G solvation = -3935.196326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.04317 -40.38932 -37.67674 -37.19212 -36.38826 -34.81625 -34.51182 -32.39501 -32.13261 -31.22276 -29.55485 -28.43060 -26.89007 -25.04215 -24.57572 -24.08858 -22.78316 -21.84193 -21.37443 -19.77630 -19.08712 -18.87544 -17.93745 -17.73987 -17.18379 -16.99192 -16.86622 -16.31624 -16.19738 -15.99089 -15.90384 -15.55675 -15.23315 -14.97610 -14.67292 -14.60212 -14.45573 -14.34604 -14.07208 -13.68889 -13.54584 -13.22595 -13.07440 -12.98947 -12.82711 -12.48705 -12.45468 -12.35767 -12.30932 -12.09621 -12.03670 -11.90998 -11.83431 -11.69017 -11.47073 -11.40765 -11.04743 -10.95657 -10.80416 -10.73968 -10.63155 -9.57826 -9.38685 -8.29149 -6.36989 1.40626 1.42392 1.51190 1.74723 1.89654 1.93809 2.13342 2.34687 2.82139 2.97248 3.04936 3.49760 3.68766 3.83388 3.92325 3.97129 4.03753 4.05615 4.07336 4.17635 4.24029 4.31170 4.32367 4.36473 4.43194 4.56602 4.57777 4.61642 4.69838 4.71683 4.75537 4.79150 4.80288 4.82460 4.88625 4.91399 4.95363 4.99480 5.00958 5.02034 5.12949 5.24205 5.28655 5.43978 5.46001 5.52888 5.63827 5.87174 5.90920 6.14840 6.18907 6.60572 6.70090 6.73142 7.24304 7.35709 8.87140 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.002799 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.764593 B = 9999.434727 C =12877.282121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.217 4.217 3 C -0.016 4.016 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.093 4.093 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.591 6.591 10 N -0.598 5.598 11 C 0.219 3.781 12 C -0.540 4.540 13 H 0.028 0.972 14 C 0.021 3.979 15 N -0.942 5.942 16 Si 0.939 3.061 17 H -0.256 1.256 18 H -0.288 1.288 19 H -0.242 1.242 20 C 0.127 3.873 21 C 0.062 3.938 22 N -0.542 5.542 23 C 0.011 3.989 24 C 0.067 3.933 25 O -0.402 6.402 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.243 0.757 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.268 0.732 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.039 0.961 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.115 0.885 50 H 0.061 0.939 51 H 0.120 0.880 52 H 0.094 0.906 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 13.066 3.063 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.217 4.217 3 C -0.052 4.052 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.131 4.131 7 C -0.174 4.174 8 C 0.301 3.699 9 O -0.473 6.473 10 N -0.328 5.328 11 C 0.097 3.903 12 C -0.578 4.578 13 H 0.046 0.954 14 C -0.178 4.178 15 N -0.581 5.581 16 Si 0.762 3.238 17 H -0.181 1.181 18 H -0.214 1.214 19 H -0.165 1.165 20 C 0.003 3.997 21 C -0.067 4.067 22 N -0.268 5.268 23 C -0.117 4.117 24 C -0.010 4.010 25 O -0.321 6.321 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.259 0.741 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.104 0.896 48 H 0.080 0.920 49 H 0.133 0.867 50 H 0.080 0.920 51 H 0.138 0.862 52 H 0.112 0.888 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.895 13.183 2.286 15.535 hybrid contribution 0.738 -0.611 0.966 1.360 sum -7.156 12.572 3.252 14.827 Atomic orbital electron populations 1.25702 0.96969 1.00554 1.00285 1.23817 0.95702 1.01037 1.01128 1.18845 0.84011 1.02439 0.99910 1.21448 0.95170 1.00513 0.97305 1.21573 0.94738 1.00912 0.97909 1.21247 0.92255 1.00992 0.98609 1.21702 0.97814 1.01588 0.96252 1.21180 0.81656 0.79276 0.87808 1.90587 1.55770 1.51776 1.49157 1.47973 1.06207 1.52728 1.25908 1.19642 0.89061 0.92132 0.89420 1.21479 1.26792 0.98189 1.11377 0.95355 1.25769 0.96326 0.94683 1.01011 1.70060 1.36075 1.10566 1.41389 0.85837 0.78167 0.80195 0.79597 1.18058 1.21405 1.16538 1.21177 0.99721 0.90690 0.88089 1.22225 0.99765 0.93651 0.91088 1.62121 1.23004 1.05313 1.36384 1.22913 0.88665 1.01391 0.98696 1.22733 1.02953 0.79927 0.95346 1.87944 1.30702 1.23576 1.89892 1.22792 0.83784 0.99518 0.95085 1.22853 1.02565 0.87035 0.98531 0.74100 0.88931 0.88242 0.91672 0.92558 0.91490 0.90063 0.91810 0.93349 0.89163 0.87383 0.94223 0.92939 0.92272 0.91014 0.91621 0.91099 0.94586 0.94283 0.89602 0.91977 0.86700 0.92050 0.86169 0.88803 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.01 19.25 74.32 1.43 -2.58 16 2 C -0.22 -4.58 13.34 31.13 0.42 -4.16 16 3 C -0.02 -0.29 5.70 28.79 0.16 -0.12 16 4 C -0.11 -2.17 5.17 30.59 0.16 -2.01 16 5 C -0.11 -2.49 5.21 30.60 0.16 -2.33 16 6 C -0.09 -2.64 4.50 30.60 0.14 -2.50 16 7 C -0.13 -4.39 4.26 29.85 0.13 -4.26 16 8 C 0.51 20.16 7.67 87.65 0.67 20.83 16 9 O -0.59 -25.83 15.56 -3.04 -0.05 -25.87 16 10 N -0.60 -23.70 2.46 -826.15 -2.03 -25.73 16 11 C 0.22 9.07 4.03 85.63 0.35 9.42 16 12 C -0.54 -27.97 9.82 25.60 0.25 -27.72 16 13 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 14 C 0.02 1.11 5.47 84.65 0.46 1.58 16 15 N -0.94 -54.71 13.96 21.45 0.30 -54.41 16 16 Si 0.94 38.48 27.47 68.60 1.88 40.36 16 17 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 18 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.24 -8.93 6.54 99.48 0.65 -8.28 16 20 C 0.13 4.62 5.34 86.38 0.46 5.08 16 21 C 0.06 1.88 5.28 86.30 0.46 2.34 16 22 N -0.54 -14.60 4.73 -895.21 -4.23 -18.84 16 23 C 0.01 0.29 5.44 86.31 0.47 0.76 16 24 C 0.07 1.45 7.01 72.02 0.50 1.95 16 25 O -0.40 -9.38 10.83 -148.98 -1.61 -10.99 16 26 C 0.06 1.25 7.01 72.01 0.50 1.75 16 27 C 0.02 0.40 5.64 86.31 0.49 0.88 16 28 H 0.24 2.55 7.80 -4.41 -0.03 2.52 16 29 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 37 H 0.09 3.30 7.99 -2.39 -0.02 3.28 16 38 H 0.11 3.02 7.39 -2.39 -0.02 3.00 16 39 H 0.04 1.59 7.13 -2.39 -0.02 1.57 16 40 H 0.05 1.98 5.87 -2.38 -0.01 1.96 16 41 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 42 H 0.07 2.66 6.44 -2.39 -0.02 2.64 16 43 H 0.07 2.60 7.42 -2.39 -0.02 2.59 16 44 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 45 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 46 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.09 2.28 6.38 -2.39 -0.02 2.26 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 53 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -67.26 426.87 2.26 -65.00 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.79 Total: 31.58 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 7.21 Total: -1.09 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -5.96 Total: -98.98 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.66 Total: -36.86 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.88 Total: 40.36 kcal Total: -67.26 2.26 -65.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780546111.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.960 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds