Wall clock time and date at job start Tue Mar 31 2020 19:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47409 * 2 1 4 4 C 1.52995 * 109.47080 * 119.99942 * 2 1 3 5 5 C 1.52995 * 109.47431 * 172.40292 * 4 2 1 6 6 C 1.52999 * 110.66434 * 65.14273 * 5 4 2 7 7 C 1.54233 * 110.50529 * 188.13516 * 5 4 2 8 8 C 1.51321 * 103.55502 * 118.80860 * 7 5 4 9 9 O 1.21220 * 125.39733 * 179.79054 * 8 7 5 10 10 N 1.33881 * 109.20389 * 359.77212 * 8 7 5 11 11 C 1.46506 * 122.75853 * 179.97438 * 10 8 7 12 12 N 1.46904 * 109.46939 * 270.00044 * 11 10 8 13 13 C 1.46843 * 111.00007 * 279.21103 * 12 11 10 14 14 C 1.53035 * 109.52422 * 174.16271 * 13 12 11 15 15 C 1.53118 * 109.27965 * 59.18187 * 14 13 12 16 16 C 1.50699 * 109.52459 * 182.44247 * 15 14 13 17 17 H 1.07996 * 119.99924 * 119.67839 * 16 15 14 18 18 C 1.37877 * 119.99622 * 299.67804 * 16 15 14 19 19 N 1.31507 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99574 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47252 * 90.00138 * 20 18 16 22 22 H 1.48503 * 109.46776 * 210.00225 * 20 18 16 23 23 H 1.48504 * 109.47411 * 329.99663 * 20 18 16 24 24 C 1.53127 * 109.15798 * 302.34643 * 15 14 13 25 25 C 1.46848 * 110.99604 * 155.00221 * 12 11 10 26 26 C 1.33875 * 114.47786 * 359.97438 * 10 8 7 27 27 O 1.21228 * 125.39669 * 179.97438 * 26 10 8 28 28 H 1.08999 * 109.47613 * 300.00287 * 1 2 3 29 29 H 1.09006 * 109.47258 * 60.00363 * 1 2 3 30 30 H 1.09005 * 109.47357 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47060 * 239.99680 * 2 1 3 32 32 H 1.09010 * 109.46961 * 315.69306 * 3 2 1 33 33 H 1.08995 * 109.47232 * 75.69181 * 3 2 1 34 34 H 1.08998 * 109.47209 * 195.69811 * 3 2 1 35 35 H 1.09007 * 109.47254 * 52.39914 * 4 2 1 36 36 H 1.09002 * 109.47179 * 292.40258 * 4 2 1 37 37 H 1.09003 * 109.47114 * 267.03764 * 6 5 4 38 38 H 1.09003 * 109.47292 * 27.03410 * 6 5 4 39 39 H 1.08995 * 109.47541 * 147.03965 * 6 5 4 40 40 H 1.08998 * 110.79808 * 0.20102 * 7 5 4 41 41 H 1.08994 * 110.54581 * 237.29747 * 7 5 4 42 42 H 1.08994 * 109.47068 * 29.99901 * 11 10 8 43 43 H 1.08994 * 109.46784 * 149.99955 * 11 10 8 44 44 H 1.09006 * 109.46500 * 294.18078 * 13 12 11 45 45 H 1.09005 * 109.46689 * 54.14502 * 13 12 11 46 46 H 1.08998 * 109.50481 * 299.23705 * 14 13 12 47 47 H 1.09000 * 109.53202 * 179.13830 * 14 13 12 48 48 H 1.08997 * 109.52427 * 62.24768 * 15 14 13 49 49 H 0.97009 * 119.99769 * 179.97438 * 19 18 16 50 50 H 1.09006 * 109.50145 * 297.71500 * 24 15 14 51 51 H 1.08990 * 109.53839 * 177.61615 * 24 15 14 52 52 H 1.08999 * 109.46059 * 305.85355 * 25 12 11 53 53 H 1.08997 * 109.46215 * 65.82458 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5580 -0.8885 1.1576 6 6 4.2539 0.4737 1.1856 7 6 4.0724 -1.7873 2.3005 8 6 4.6936 -2.9616 1.5760 9 8 5.2263 -3.9123 2.1071 10 7 4.5614 -2.7844 0.2556 11 6 5.0616 -3.7485 -0.7276 12 7 6.4439 -3.4069 -1.0889 13 6 6.4764 -2.3274 -2.0838 14 6 7.9255 -1.8996 -2.3272 15 6 8.7309 -3.1027 -2.8256 16 6 10.1720 -2.7026 -3.0100 17 1 10.9472 -3.2018 -2.4476 18 6 10.5008 -1.6992 -3.8966 19 7 9.5568 -1.0910 -4.5809 20 14 12.2873 -1.2038 -4.1256 21 1 12.8922 -2.0193 -5.2091 22 1 12.3594 0.2343 -4.4892 23 1 13.0305 -1.4321 -2.8603 24 6 8.6408 -4.2302 -1.7934 25 6 7.1710 -4.5904 -1.5655 26 6 3.9345 -1.6538 -0.0923 27 8 3.7095 -1.2968 -1.2287 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.4678 2.0302 -0.7179 33 1 1.9217 1.8696 0.9957 34 1 3.0939 1.4552 -0.2780 35 1 1.5699 -1.7022 1.3198 36 1 1.7918 -0.1349 2.1340 37 1 4.4102 0.8229 0.1649 38 1 3.6312 1.1890 1.7229 39 1 5.2163 0.3799 1.6886 40 1 3.2488 -2.1189 2.9328 41 1 4.8216 -1.2620 2.8927 42 1 5.0349 -4.7506 -0.3000 43 1 4.4348 -3.7169 -1.6187 44 1 6.0404 -2.6813 -3.0181 45 1 5.9036 -1.4764 -1.7153 46 1 8.3578 -1.5326 -1.3964 47 1 7.9510 -1.1089 -3.0770 48 1 8.3226 -3.4458 -3.7763 49 1 9.7882 -0.3848 -5.2045 50 1 9.0844 -3.8999 -0.8541 51 1 9.1770 -5.1049 -2.1613 52 1 7.1026 -5.3830 -0.8204 53 1 6.7318 -4.9336 -2.5021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781573084.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:05 Heat of formation + Delta-G solvation = -87.716219 kcal Electronic energy + Delta-G solvation = -31478.499811 eV Core-core repulsion = 27542.189943 eV Total energy + Delta-G solvation = -3936.309868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.22283 -39.94988 -39.78130 -38.05544 -36.91548 -35.77231 -34.33978 -32.84077 -31.59279 -29.88503 -28.62344 -28.02424 -27.20287 -26.30317 -24.83008 -23.92098 -23.36187 -21.92757 -21.28480 -20.48673 -19.93668 -18.54556 -18.15868 -18.03499 -17.26885 -16.81194 -16.50507 -16.22946 -15.81251 -15.77183 -15.49220 -15.16863 -14.99642 -14.89885 -14.71264 -14.37821 -14.25475 -14.19717 -13.85457 -13.60535 -13.28644 -13.19548 -13.13642 -13.03965 -12.91887 -12.77156 -12.68249 -12.60692 -12.40234 -12.10862 -11.99866 -11.92913 -11.68266 -11.54294 -11.46799 -11.39506 -11.09093 -10.93725 -10.85446 -10.75374 -10.62016 -10.40034 -9.47046 -8.10463 -6.24417 0.53970 1.39257 1.39877 1.42483 1.50538 1.78950 2.41763 2.88577 3.02375 3.16364 3.23715 3.41813 3.71083 3.83692 4.00776 4.02891 4.12370 4.13869 4.21955 4.25547 4.28157 4.38864 4.43083 4.55613 4.65594 4.67655 4.70947 4.77029 4.80400 4.82529 4.87925 4.89477 4.93559 4.96563 5.00435 5.07229 5.12577 5.13952 5.16777 5.23330 5.33435 5.41504 5.47339 5.56892 5.61292 5.63530 5.78494 5.88418 5.95516 6.05710 6.17109 6.36037 6.37956 6.79945 6.86695 7.43590 8.94223 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.003210 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.284135 B = 8720.551100 C = 9661.314322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.158 4.158 4 C -0.087 4.087 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.137 4.137 8 C 0.528 3.472 9 O -0.516 6.516 10 N -0.569 5.569 11 C 0.263 3.737 12 N -0.553 5.553 13 C 0.078 3.922 14 C -0.090 4.090 15 C 0.045 3.955 16 C -0.533 4.533 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.097 4.097 25 C 0.072 3.928 26 C 0.526 3.474 27 O -0.500 6.500 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.155 0.845 41 H 0.141 0.859 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.014 0.986 45 H 0.060 0.940 46 H 0.026 0.974 47 H 0.060 0.940 48 H -0.010 1.010 49 H 0.260 0.740 50 H 0.048 0.952 51 H 0.061 0.939 52 H 0.091 0.909 53 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.826 2.181 16.305 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C -0.214 4.214 4 C -0.125 4.125 5 C -0.087 4.087 6 C -0.198 4.198 7 C -0.176 4.176 8 C 0.319 3.681 9 O -0.389 6.389 10 N -0.312 5.312 11 C 0.052 3.948 12 N -0.280 5.280 13 C -0.049 4.049 14 C -0.129 4.129 15 C 0.027 3.973 16 C -0.571 4.571 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.135 4.135 25 C -0.056 4.056 26 C 0.316 3.684 27 O -0.373 6.373 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.131 0.869 43 H 0.084 0.916 44 H 0.032 0.968 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.078 0.922 48 H 0.008 0.992 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.080 0.920 52 H 0.109 0.891 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.445 2.133 16.239 25.424 hybrid contribution 0.913 -0.086 -1.870 2.083 sum -18.532 2.047 14.368 23.539 Atomic orbital electron populations 1.21790 0.94319 1.01606 1.02109 1.21327 0.96293 0.97217 0.98642 1.22304 1.01569 0.95317 1.02259 1.21735 0.88549 1.02287 0.99897 1.21558 1.00202 0.96837 0.90053 1.22312 1.00978 0.93604 1.02930 1.22905 1.04567 0.92291 0.97853 1.21502 0.76712 0.88118 0.81767 1.90739 1.42242 1.34651 1.71293 1.47046 1.51546 1.22817 1.09801 1.22076 0.88475 0.92492 0.91775 1.61644 1.13525 1.09773 1.43030 1.22017 0.98005 0.93335 0.91592 1.21392 0.92247 1.00590 0.98643 1.18651 0.94287 0.91973 0.92416 1.21556 0.93533 1.18884 1.23147 0.92968 1.25773 1.01259 0.96291 0.95403 1.70029 1.33683 1.25157 1.26892 0.85604 0.80489 0.77333 0.78519 1.20088 1.20858 1.19305 1.21532 0.94366 0.98602 0.99019 1.22031 0.94230 0.90823 0.98491 1.21521 0.74799 0.80186 0.91885 1.90711 1.52640 1.69827 1.24146 0.91115 0.93491 0.92977 0.92212 0.93914 0.90536 0.92353 0.90733 0.86635 0.92690 0.87376 0.91514 0.82764 0.84070 0.86911 0.91553 0.96818 0.92138 0.95466 0.92166 0.99166 0.93092 0.93276 0.92036 0.89068 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.13 71.98 0.66 -1.18 16 2 C -0.12 -1.86 2.69 -10.80 -0.03 -1.89 16 3 C -0.16 -2.39 7.74 71.98 0.56 -1.83 16 4 C -0.09 -0.97 3.68 30.59 0.11 -0.86 16 5 C -0.08 -1.29 0.78 -52.32 -0.04 -1.33 16 6 C -0.14 -2.10 7.43 71.98 0.53 -1.56 16 7 C -0.14 -1.77 6.28 30.46 0.19 -1.58 16 8 C 0.53 12.70 8.08 87.99 0.71 13.41 16 9 O -0.52 -15.84 17.48 -2.85 -0.05 -15.89 16 10 N -0.57 -15.32 2.77 -767.01 -2.12 -17.44 16 11 C 0.26 7.97 5.42 170.80 0.93 8.90 16 12 N -0.55 -20.48 4.75 -908.71 -4.32 -24.80 16 13 C 0.08 3.35 5.21 86.33 0.45 3.80 16 14 C -0.09 -4.60 5.12 30.65 0.16 -4.44 16 15 C 0.05 2.37 2.16 -11.46 -0.02 2.35 16 16 C -0.53 -30.46 8.56 25.60 0.22 -30.24 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 18 C 0.01 0.64 5.31 84.66 0.45 1.08 16 19 N -0.92 -54.72 11.37 21.45 0.24 -54.47 16 20 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 24 C -0.10 -4.20 5.32 30.65 0.16 -4.04 16 25 C 0.07 2.58 5.40 86.33 0.47 3.05 16 26 C 0.53 13.47 5.62 87.99 0.49 13.96 16 27 O -0.50 -16.15 13.28 -2.87 -0.04 -16.19 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 1.41 5.36 -2.38 -0.01 1.40 16 32 H 0.04 0.69 8.05 -2.38 -0.02 0.67 16 33 H 0.08 0.76 7.15 -2.39 -0.02 0.75 16 34 H 0.06 1.08 4.76 -2.39 -0.01 1.07 16 35 H 0.07 0.76 8.13 -2.38 -0.02 0.74 16 36 H 0.12 0.58 7.92 -2.39 -0.02 0.56 16 37 H 0.05 1.13 5.76 -2.39 -0.01 1.12 16 38 H 0.11 0.95 6.17 -2.39 -0.01 0.94 16 39 H 0.07 0.96 7.40 -2.39 -0.02 0.94 16 40 H 0.15 0.95 7.74 -2.39 -0.02 0.93 16 41 H 0.14 1.38 7.34 -2.39 -0.02 1.36 16 42 H 0.11 3.07 7.39 -2.39 -0.02 3.05 16 43 H 0.07 2.03 7.61 -2.39 -0.02 2.02 16 44 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.06 2.57 5.64 -2.38 -0.01 2.56 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.06 3.45 6.17 -2.39 -0.01 3.44 16 48 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 49 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 50 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 51 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 52 H 0.09 2.80 7.91 -2.39 -0.02 2.78 16 53 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.31 394.24 2.62 -69.68 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.89 Total: 14.68 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.99 Total: -2.40 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -6.20 Total: -96.71 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.09 Total: -32.08 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.31 2.62 -69.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781573084.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.032 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds