Wall clock time and date at job start Tue Mar 31 2020 19:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 C 1.52999 * 109.47366 * 119.99413 * 2 1 3 5 5 C 1.53001 * 109.46894 * 75.98072 * 4 2 1 6 6 C 1.53006 * 110.66316 * 299.39290 * 5 4 2 7 7 C 1.54223 * 110.60892 * 176.45978 * 5 4 2 8 8 C 1.51320 * 103.55417 * 241.26099 * 7 5 4 9 9 O 1.21222 * 125.39367 * 180.24847 * 8 7 5 10 10 N 1.33868 * 109.20665 * 0.38400 * 8 7 5 11 11 C 1.46499 * 122.76340 * 179.84149 * 10 8 7 12 12 N 1.46899 * 109.46989 * 269.70999 * 11 10 8 13 13 C 1.46838 * 111.00200 * 30.79064 * 12 11 10 14 14 C 1.53042 * 109.52568 * 185.83629 * 13 12 11 15 15 C 1.53121 * 109.27920 * 300.82167 * 14 13 12 16 16 C 1.50697 * 109.57724 * 177.58813 * 15 14 13 17 17 H 1.07991 * 120.00041 * 240.28721 * 16 15 14 18 18 C 1.37876 * 119.99621 * 60.28470 * 16 15 14 19 19 N 1.31512 * 120.00356 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99564 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47301 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46919 * 120.00040 * 20 18 16 23 23 H 1.48505 * 109.47071 * 239.99729 * 20 18 16 24 24 C 1.53121 * 109.16173 * 57.64762 * 15 14 13 25 25 C 1.46857 * 110.99492 * 154.99909 * 12 11 10 26 26 C 1.33882 * 114.47606 * 359.57432 * 10 8 7 27 27 O 1.21224 * 125.39425 * 180.28725 * 26 10 8 28 28 H 1.08999 * 109.47374 * 44.66017 * 1 2 3 29 29 H 1.08999 * 109.47179 * 164.66523 * 1 2 3 30 30 H 1.09004 * 109.46648 * 284.66146 * 1 2 3 31 31 H 1.08995 * 109.46797 * 240.00279 * 2 1 3 32 32 H 1.08993 * 109.47144 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46651 * 300.00321 * 3 2 1 34 34 H 1.08996 * 109.47117 * 59.99534 * 3 2 1 35 35 H 1.09000 * 109.47061 * 315.98654 * 4 2 1 36 36 H 1.08996 * 109.47223 * 195.97792 * 4 2 1 37 37 H 1.08996 * 109.47186 * 202.56123 * 6 5 4 38 38 H 1.09000 * 109.47013 * 322.56150 * 6 5 4 39 39 H 1.08997 * 109.47307 * 82.55984 * 6 5 4 40 40 H 1.09003 * 110.60340 * 359.97438 * 7 5 4 41 41 H 1.08997 * 110.60928 * 122.96167 * 7 5 4 42 42 H 1.09000 * 109.47232 * 29.71241 * 11 10 8 43 43 H 1.09005 * 109.47195 * 149.70735 * 11 10 8 44 44 H 1.08998 * 109.46611 * 305.85465 * 13 12 11 45 45 H 1.09003 * 109.46672 * 65.81972 * 13 12 11 46 46 H 1.08991 * 109.50406 * 180.88058 * 14 13 12 47 47 H 1.09004 * 109.50073 * 60.75672 * 14 13 12 48 48 H 1.09001 * 109.52070 * 297.74975 * 15 14 13 49 49 H 0.97002 * 120.00096 * 180.02562 * 19 18 16 50 50 H 1.08999 * 109.50631 * 182.40325 * 24 15 14 51 51 H 1.09000 * 109.49859 * 62.28909 * 24 15 14 52 52 H 1.08999 * 109.46163 * 294.17553 * 25 12 11 53 53 H 1.08997 * 109.46294 * 54.15783 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.8806 -2.2318 1.0669 6 6 0.4091 -2.5989 0.8649 7 6 2.4681 -2.9894 2.2749 8 6 3.5696 -3.8291 1.6654 9 8 4.2917 -4.5890 2.2742 10 7 3.6222 -3.5974 0.3480 11 6 4.5883 -4.2558 -0.5348 12 7 5.8087 -3.4424 -0.6183 13 6 6.0355 -2.7039 0.6304 14 6 7.2279 -1.7603 0.4574 15 6 8.4705 -2.5775 0.0930 16 6 9.6354 -1.6496 -0.1371 17 1 10.1281 -1.6294 -1.0978 18 6 10.0722 -0.8264 0.8792 19 7 9.4718 -0.8507 2.0490 20 14 11.5157 0.3243 0.5938 21 1 12.0112 0.1615 -0.7966 22 1 11.0786 1.7280 0.8029 23 1 12.6053 -0.0023 1.5485 24 6 8.1912 -3.3745 -1.1843 25 6 6.9708 -4.2713 -0.9636 26 6 2.7155 -2.7187 -0.0973 27 8 2.5841 -2.3690 -1.2505 28 1 -0.3634 0.7309 -0.7223 29 1 -0.3633 -0.9911 -0.2718 30 1 -0.3633 0.2601 0.9943 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.4644 -0.3971 2.1163 36 1 3.0926 -0.4827 1.4021 37 1 0.2552 -3.6442 1.1329 38 1 -0.2134 -1.9662 1.4976 39 1 0.1370 -2.4479 -0.1797 40 1 2.8744 -2.2901 3.0057 41 1 1.7121 -3.6278 2.7321 42 1 4.8340 -5.2397 -0.1352 43 1 4.1559 -4.3653 -1.5294 44 1 5.1460 -2.1238 0.8760 45 1 6.2435 -3.4080 1.4362 46 1 7.4056 -1.2238 1.3893 47 1 7.0150 -1.0472 -0.3390 48 1 8.7065 -3.2638 0.9062 49 1 9.7789 -0.2713 2.7638 50 1 9.0571 -3.9911 -1.4252 51 1 7.9934 -2.6867 -2.0064 52 1 7.1744 -4.9680 -0.1504 53 1 6.7607 -4.8293 -1.8760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781573085.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:08 Heat of formation + Delta-G solvation = -82.220050 kcal Electronic energy + Delta-G solvation = -31883.207716 eV Core-core repulsion = 27947.136180 eV Total energy + Delta-G solvation = -3936.071536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.42603 -40.18134 -39.60340 -38.08282 -37.01075 -35.78647 -34.36843 -32.80082 -31.63072 -29.86579 -28.59457 -28.09246 -27.29817 -26.29476 -25.10783 -23.89902 -23.27166 -22.06434 -21.32631 -20.48168 -19.98078 -18.63773 -18.19302 -18.11677 -17.35162 -16.84333 -16.53507 -16.20762 -15.77718 -15.62428 -15.47517 -15.34330 -15.10362 -14.91640 -14.84745 -14.44577 -14.30892 -14.09211 -13.77546 -13.57835 -13.51055 -13.29552 -13.19933 -13.01810 -12.90807 -12.82173 -12.74121 -12.68689 -12.34102 -12.13151 -12.00625 -11.94668 -11.72419 -11.62911 -11.47179 -11.41755 -11.19732 -11.00778 -10.86054 -10.73849 -10.68568 -10.43998 -9.38141 -8.11361 -6.25312 0.45485 1.36564 1.37993 1.39505 1.51411 1.65764 2.41290 2.84955 2.99598 3.13518 3.15595 3.35834 3.68016 3.88889 3.96487 4.02076 4.06564 4.12460 4.18215 4.23286 4.24913 4.35037 4.37460 4.46251 4.62977 4.63787 4.65537 4.70099 4.79308 4.83919 4.85879 4.86774 4.91706 4.94609 4.97107 5.05626 5.12898 5.14399 5.16137 5.22394 5.34588 5.38345 5.44198 5.56237 5.59207 5.63060 5.74414 5.85621 5.89249 6.03733 6.13433 6.28253 6.34786 6.71436 6.85810 7.42832 8.93908 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.003674 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.572962 B = 7619.152513 C = 8603.312163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.082 4.082 6 C -0.136 4.136 7 C -0.141 4.141 8 C 0.519 3.481 9 O -0.518 6.518 10 N -0.580 5.580 11 C 0.266 3.734 12 N -0.550 5.550 13 C 0.077 3.923 14 C -0.089 4.089 15 C 0.044 3.956 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.918 5.918 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.098 4.098 25 C 0.068 3.932 26 C 0.532 3.468 27 O -0.491 6.491 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.067 0.933 43 H 0.116 0.884 44 H 0.055 0.945 45 H 0.012 0.988 46 H 0.061 0.939 47 H 0.027 0.973 48 H -0.014 1.014 49 H 0.260 0.740 50 H 0.061 0.939 51 H 0.053 0.947 52 H 0.024 0.976 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.759 -2.609 -0.022 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.133 4.133 3 C -0.203 4.203 4 C -0.133 4.133 5 C -0.085 4.085 6 C -0.192 4.192 7 C -0.180 4.180 8 C 0.311 3.689 9 O -0.392 6.392 10 N -0.323 5.323 11 C 0.055 3.945 12 N -0.277 5.277 13 C -0.051 4.051 14 C -0.127 4.127 15 C 0.026 3.974 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.135 4.135 25 C -0.060 4.060 26 C 0.322 3.678 27 O -0.363 6.363 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.176 0.824 42 H 0.085 0.915 43 H 0.134 0.866 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.004 0.996 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.042 0.958 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.492 -2.432 -0.555 23.624 hybrid contribution 1.789 0.028 0.469 1.850 sum -21.703 -2.404 -0.086 21.836 Atomic orbital electron populations 1.22269 0.93213 1.03019 1.02519 1.21326 0.97780 0.95844 0.98367 1.21829 0.99817 0.96434 1.02241 1.21759 1.01797 0.89514 1.00186 1.21569 0.98315 0.98142 0.90507 1.22231 0.89702 1.03379 1.03915 1.22917 0.96826 0.99654 0.98571 1.21664 0.84754 0.81209 0.81311 1.90782 1.45382 1.37322 1.65665 1.47069 1.32549 1.41515 1.11161 1.22437 0.84369 0.92441 0.95211 1.62388 1.03404 1.28090 1.33856 1.21936 0.98108 0.95856 0.89232 1.21378 0.93518 0.97180 1.00672 1.18654 0.92971 0.93373 0.92428 1.21582 1.15258 1.22126 0.98124 0.92884 1.25767 0.99363 0.98615 0.94882 1.70031 1.42126 1.40054 1.03602 0.85550 0.79371 0.78664 0.78347 1.19130 1.20534 1.20545 1.21530 0.95594 0.97741 0.98682 1.22099 0.89563 0.93987 1.00304 1.21405 0.79417 0.76239 0.90690 1.90681 1.68887 1.55849 1.20874 0.93440 0.90560 0.90903 0.91582 0.94910 0.92704 0.91316 0.86614 0.93356 0.90574 0.87544 0.91126 0.84606 0.82377 0.91503 0.86648 0.92676 0.96947 0.92014 0.95380 0.99599 0.93043 0.92037 0.92810 0.95800 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 7.92 71.98 0.57 -1.40 16 2 C -0.11 -2.16 2.75 -10.79 -0.03 -2.19 16 3 C -0.15 -2.90 9.07 71.98 0.65 -2.25 16 4 C -0.10 -1.57 3.74 30.59 0.11 -1.45 16 5 C -0.08 -1.32 0.78 -52.32 -0.04 -1.36 16 6 C -0.14 -1.31 7.03 71.98 0.51 -0.80 16 7 C -0.14 -2.15 6.27 30.46 0.19 -1.96 16 8 C 0.52 13.87 6.29 88.00 0.55 14.43 16 9 O -0.52 -17.97 16.43 -2.85 -0.05 -18.02 16 10 N -0.58 -16.13 1.57 -767.03 -1.21 -17.33 16 11 C 0.27 8.12 6.04 170.81 1.03 9.15 16 12 N -0.55 -20.69 4.91 -908.70 -4.46 -25.15 16 13 C 0.08 3.29 4.24 86.33 0.37 3.66 16 14 C -0.09 -4.56 5.12 30.65 0.16 -4.40 16 15 C 0.04 2.35 2.16 -11.46 -0.02 2.33 16 16 C -0.53 -30.62 8.56 25.60 0.22 -30.40 16 17 H 0.05 2.99 7.74 -2.92 -0.02 2.97 16 18 C 0.01 0.69 5.31 84.65 0.45 1.14 16 19 N -0.92 -54.69 11.37 21.45 0.24 -54.44 16 20 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 C -0.10 -4.25 5.32 30.65 0.16 -4.08 16 25 C 0.07 2.50 5.29 86.32 0.46 2.95 16 26 C 0.53 13.56 6.23 87.99 0.55 14.10 16 27 O -0.49 -15.23 14.98 -2.86 -0.04 -15.28 16 28 H 0.05 0.64 8.05 -2.39 -0.02 0.62 16 29 H 0.08 0.87 4.55 -2.39 -0.01 0.86 16 30 H 0.07 0.64 7.75 -2.38 -0.02 0.62 16 31 H 0.07 1.69 5.25 -2.39 -0.01 1.68 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.12 1.15 7.83 -2.39 -0.02 1.13 16 36 H 0.05 1.05 8.04 -2.39 -0.02 1.03 16 37 H 0.08 0.54 7.68 -2.39 -0.02 0.52 16 38 H 0.11 0.50 7.03 -2.39 -0.02 0.48 16 39 H 0.07 0.87 5.99 -2.39 -0.01 0.85 16 40 H 0.14 1.83 7.74 -2.39 -0.02 1.81 16 41 H 0.16 1.27 7.50 -2.39 -0.02 1.26 16 42 H 0.07 1.99 7.54 -2.39 -0.02 1.97 16 43 H 0.12 3.20 7.83 -2.38 -0.02 3.18 16 44 H 0.05 2.21 6.06 -2.39 -0.01 2.20 16 45 H 0.01 0.58 7.08 -2.39 -0.02 0.56 16 46 H 0.06 3.52 6.17 -2.39 -0.01 3.51 16 47 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 48 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 49 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 50 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 51 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 52 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.10 2.92 8.12 -2.39 -0.02 2.90 16 Total: -1.00 -73.55 393.65 3.28 -70.27 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.89 Total: 15.60 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.88 Total: -2.53 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -5.42 Total: -96.93 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.09 Total: -33.29 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.55 3.28 -70.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781573085.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.955 kcal (2) G-P(sol) polarization free energy of solvation -73.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds