Wall clock time and date at job start Tue Mar 31 2020 19:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99963 * 2 1 4 4 C 1.50696 * 119.99943 * 180.28196 * 2 1 3 5 5 C 1.53005 * 109.47332 * 126.69031 * 4 2 1 6 6 C 1.53000 * 109.47089 * 246.68820 * 4 2 1 7 7 C 1.50700 * 109.47176 * 6.69003 * 4 2 1 8 8 O 1.21285 * 120.00011 * 242.33212 * 7 4 2 9 9 N 1.34773 * 120.00304 * 62.33373 * 7 4 2 10 10 C 1.47152 * 120.98285 * 0.02562 * 9 7 4 11 11 C 1.52847 * 108.61857 * 230.52373 * 10 9 7 12 12 O 1.42960 * 109.31628 * 307.92022 * 11 10 9 13 13 C 1.42897 * 114.20730 * 62.34402 * 12 11 10 14 14 C 1.52983 * 109.56299 * 57.45872 * 13 12 11 15 15 C 1.53197 * 109.35035 * 59.05905 * 14 13 12 16 16 N 1.46935 * 108.77207 * 54.57503 * 15 14 13 17 17 C 1.36936 * 120.64071 * 126.30345 * 16 15 14 18 18 H 1.08000 * 119.99798 * 204.47199 * 17 16 15 19 19 C 1.38811 * 120.00262 * 24.48063 * 17 16 15 20 20 N 1.31617 * 120.00162 * 33.92150 * 19 17 16 21 21 Si 1.86796 * 119.99828 * 213.92791 * 19 17 16 22 22 H 1.48504 * 109.47389 * 94.99246 * 21 19 17 23 23 H 1.48502 * 109.47384 * 214.98802 * 21 19 17 24 24 H 1.48501 * 109.47413 * 334.98945 * 21 19 17 25 25 C 1.46923 * 118.71198 * 306.32438 * 16 15 14 26 26 C 1.52994 * 109.55856 * 177.77165 * 13 12 11 27 27 C 1.47147 * 120.99247 * 180.30655 * 9 7 4 28 28 H 1.07997 * 119.99942 * 7.59856 * 1 2 3 29 29 H 1.08001 * 119.99834 * 187.59988 * 1 2 3 30 30 H 1.09000 * 109.46456 * 90.00076 * 3 2 1 31 31 H 1.08998 * 109.46683 * 210.00076 * 3 2 1 32 32 H 1.09001 * 109.46849 * 330.00469 * 3 2 1 33 33 H 1.08998 * 109.46759 * 52.86555 * 5 4 2 34 34 H 1.09000 * 109.47007 * 172.86598 * 5 4 2 35 35 H 1.08993 * 109.46790 * 292.86602 * 5 4 2 36 36 H 1.09004 * 109.46887 * 64.24343 * 6 4 2 37 37 H 1.09002 * 109.47295 * 184.24207 * 6 4 2 38 38 H 1.09001 * 109.47487 * 304.24335 * 6 4 2 39 39 H 1.08997 * 109.68870 * 350.30764 * 10 9 7 40 40 H 1.09000 * 109.68411 * 110.87171 * 10 9 7 41 41 H 1.09000 * 109.58725 * 187.89385 * 11 10 9 42 42 H 1.09001 * 109.38909 * 67.83157 * 11 10 9 43 43 H 1.09002 * 109.49438 * 179.02258 * 14 13 12 44 44 H 1.08998 * 109.49606 * 299.09732 * 14 13 12 45 45 H 1.08997 * 109.58595 * 294.78508 * 15 14 13 46 46 H 1.08999 * 109.70373 * 174.42833 * 15 14 13 47 47 H 0.96997 * 119.99954 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.58703 * 293.88519 * 25 16 15 49 49 H 1.09002 * 109.70431 * 173.53667 * 25 16 15 50 50 H 1.09001 * 109.48947 * 60.89652 * 26 13 12 51 51 H 1.09001 * 109.49354 * 180.94976 * 26 13 12 52 52 H 1.08998 * 109.68023 * 249.24871 * 27 9 7 53 53 H 1.09001 * 109.67744 * 9.75368 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0064 5 6 3.0649 -1.3102 -1.1632 6 6 2.8128 -1.4678 1.3175 7 6 1.0926 -2.4448 -0.1776 8 8 0.9777 -3.2798 0.6946 9 7 0.3518 -2.5364 -1.2997 10 6 0.4741 -1.5359 -2.3718 11 6 -0.9246 -1.0406 -2.7389 12 8 -1.7673 -2.1628 -3.0111 13 6 -1.9572 -3.0369 -1.8967 14 6 -2.5413 -2.2498 -0.7220 15 6 -3.8769 -1.6279 -1.1418 16 7 -4.7537 -2.6906 -1.6525 17 6 -6.0112 -2.8647 -1.1392 18 1 -6.4924 -3.8294 -1.2047 19 6 -6.6676 -1.8014 -0.5348 20 7 -6.4856 -0.5765 -0.9807 21 14 -7.8090 -2.1088 0.9116 22 1 -7.0644 -1.9098 2.1809 23 1 -8.9494 -1.1595 0.8528 24 1 -8.3208 -3.5016 0.8510 25 6 -4.2548 -3.5631 -2.7241 26 6 -2.9151 -4.1641 -2.2873 27 6 -0.6076 -3.6363 -1.4867 28 1 -0.5400 0.9271 -0.1237 29 1 -0.5400 -0.9271 0.1237 30 1 2.2451 1.6197 1.0277 31 1 3.0159 1.1748 -0.5138 32 1 1.4744 2.0648 -0.5138 33 1 3.6862 -0.4162 -1.1097 34 1 3.6961 -2.1960 -1.0934 35 1 2.5258 -1.3219 -2.1104 36 1 2.0951 -1.5399 2.1348 37 1 3.4173 -2.3743 1.2839 38 1 3.4599 -0.6053 1.4773 39 1 1.0795 -0.6984 -2.0253 40 1 0.9405 -1.9898 -3.2462 41 1 -0.8670 -0.4056 -3.6230 42 1 -1.3362 -0.4694 -1.9067 43 1 -2.7019 -2.9211 0.1216 44 1 -1.8477 -1.4605 -0.4323 45 1 -3.7057 -0.8881 -1.9237 46 1 -4.3457 -1.1491 -0.2820 47 1 -6.9439 0.1666 -0.5581 48 1 -4.1143 -2.9801 -3.6344 49 1 -4.9711 -4.3635 -2.9099 50 1 -2.4872 -4.7360 -3.1107 51 1 -3.0724 -4.8207 -1.4315 52 1 -0.2505 -4.3059 -2.2691 53 1 -0.7190 -4.1887 -0.5537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949154517.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:11 Heat of formation + Delta-G solvation = -32.655778 kcal Electronic energy + Delta-G solvation = -32832.901095 eV Core-core repulsion = 28898.978827 eV Total energy + Delta-G solvation = -3933.922268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.46733 -40.52272 -37.97855 -37.76506 -35.71999 -34.74046 -33.12438 -32.71260 -31.84592 -30.14362 -28.97973 -28.51945 -27.73226 -25.96757 -24.73527 -24.20406 -23.79654 -22.47324 -20.98306 -20.34751 -19.42661 -18.80148 -17.81295 -17.40389 -17.22399 -16.72082 -16.39133 -16.19113 -16.04172 -15.57142 -15.35090 -15.25765 -15.15667 -14.84417 -14.74813 -14.36123 -14.16967 -13.85875 -13.72552 -13.55399 -13.40828 -13.24871 -13.10637 -13.02416 -12.88917 -12.85476 -12.72065 -12.60415 -12.31277 -12.28091 -12.17669 -12.05130 -11.86967 -11.75831 -11.75285 -11.42886 -11.22893 -10.81087 -10.64543 -10.46693 -9.92923 -9.52500 -8.80797 -7.97008 -5.24977 1.11888 1.41014 1.45576 1.48610 1.53691 1.82917 2.48784 2.78724 3.12570 3.26852 3.54709 3.59158 3.70466 3.80313 3.85671 3.94195 3.98425 4.11773 4.15483 4.18636 4.30292 4.39755 4.45360 4.58902 4.61910 4.64916 4.65810 4.72010 4.76194 4.79156 4.81836 4.87023 4.88763 4.89247 4.90945 4.95699 5.02050 5.09376 5.12989 5.16224 5.24444 5.27061 5.29428 5.34101 5.38325 5.58433 5.60185 5.67465 5.80197 6.27987 6.29422 6.32655 7.03825 7.08150 7.83281 8.37429 9.09306 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.003859 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.423855 B = 7254.507107 C = 7764.443392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.105 4.105 3 C -0.115 4.115 4 C -0.045 4.045 5 C -0.154 4.154 6 C -0.121 4.121 7 C 0.520 3.480 8 O -0.583 6.583 9 N -0.605 5.605 10 C 0.067 3.933 11 C 0.032 3.968 12 O -0.375 6.375 13 C 0.126 3.874 14 C -0.158 4.158 15 C 0.195 3.805 16 N -0.606 5.606 17 C -0.275 4.275 18 H 0.066 0.934 19 C -0.037 4.037 20 N -0.915 5.915 21 Si 0.943 3.057 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.149 3.851 26 C -0.110 4.110 27 C 0.095 3.905 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.004 0.996 46 H 0.033 0.967 47 H 0.251 0.749 48 H 0.017 0.983 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.091 0.909 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.167 2.583 -3.193 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.105 4.105 3 C -0.171 4.171 4 C -0.048 4.048 5 C -0.210 4.210 6 C -0.179 4.179 7 C 0.310 3.690 8 O -0.463 6.463 9 N -0.337 5.337 10 C -0.055 4.055 11 C -0.045 4.045 12 O -0.294 6.294 13 C 0.086 3.914 14 C -0.197 4.197 15 C 0.069 3.931 16 N -0.329 5.329 17 C -0.405 4.405 18 H 0.084 0.916 19 C -0.234 4.234 20 N -0.559 5.559 21 Si 0.772 3.228 22 H -0.218 1.218 23 H -0.220 1.220 24 H -0.191 1.191 25 C 0.024 3.976 26 C -0.150 4.150 27 C -0.028 4.028 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.147 0.853 40 H 0.114 0.886 41 H 0.142 0.858 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.022 0.978 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.035 0.965 49 H 0.073 0.927 50 H 0.110 0.890 51 H 0.090 0.910 52 H 0.109 0.891 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 23.941 2.231 -2.904 24.220 hybrid contribution -1.407 -0.059 1.266 1.894 sum 22.535 2.172 -1.637 22.698 Atomic orbital electron populations 1.24195 0.96311 1.02345 1.02768 1.21604 0.94268 0.95301 0.99366 1.20947 1.00875 0.91924 1.03360 1.19943 0.94780 0.89917 1.00144 1.22298 0.98065 1.04646 0.96013 1.21639 0.99515 1.03016 0.93722 1.21157 0.80842 0.86689 0.80282 1.90666 1.68882 1.44294 1.42456 1.48147 1.39538 1.27272 1.18734 1.22986 0.98575 0.93314 0.90608 1.23157 0.89384 0.88946 1.02999 1.87981 1.69077 1.37316 1.35013 1.21511 0.93014 0.90612 0.86263 1.22726 0.98552 1.00488 0.97887 1.20255 0.87993 0.89247 0.95582 1.44361 1.12177 1.36298 1.40109 1.19413 0.93797 0.94362 1.32909 0.91640 1.25465 0.99610 0.95250 1.03094 1.70383 1.46484 0.99844 1.39227 0.85613 0.78136 0.77922 0.81164 1.21841 1.21984 1.19120 1.20882 0.93739 0.93027 0.89933 1.21891 0.95235 0.95679 1.02162 1.22235 0.88296 0.89696 1.02602 0.86983 0.90126 0.90528 0.89170 0.90574 0.88048 0.91685 0.90054 0.94321 0.92282 0.88852 0.85324 0.88625 0.85840 0.93220 0.93638 0.90462 0.97839 0.94884 0.94041 0.96463 0.92681 0.88966 0.90987 0.89090 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.17 9.43 67.78 0.64 -4.53 16 2 C -0.11 -1.86 3.30 -16.49 -0.05 -1.91 16 3 C -0.11 -1.21 9.58 71.24 0.68 -0.53 16 4 C -0.04 -0.85 0.61 -53.67 -0.03 -0.88 16 5 C -0.15 -1.83 7.99 71.98 0.58 -1.25 16 6 C -0.12 -2.30 7.77 71.98 0.56 -1.74 16 7 C 0.52 14.41 4.99 87.66 0.44 14.84 16 8 O -0.58 -21.19 15.39 -3.04 -0.05 -21.24 16 9 N -0.60 -15.47 1.90 -818.29 -1.56 -17.03 16 10 C 0.07 1.29 3.78 86.20 0.33 1.62 16 11 C 0.03 0.80 6.38 71.93 0.46 1.26 16 12 O -0.37 -12.26 9.00 -148.98 -1.34 -13.60 16 13 C 0.13 4.25 0.68 -10.71 -0.01 4.25 16 14 C -0.16 -6.35 4.33 30.65 0.13 -6.22 16 15 C 0.20 9.74 5.28 86.36 0.46 10.19 16 16 N -0.61 -31.59 3.00 -699.08 -2.10 -33.69 16 17 C -0.28 -15.75 9.48 84.03 0.80 -14.96 16 18 H 0.07 3.69 8.00 -2.91 -0.02 3.67 16 19 C -0.04 -2.11 4.43 84.86 0.38 -1.74 16 20 N -0.92 -55.62 12.14 21.65 0.26 -55.35 16 21 Si 0.94 46.10 29.66 68.60 2.03 48.13 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.15 6.46 6.28 86.36 0.54 7.00 16 26 C -0.11 -3.81 5.10 30.66 0.16 -3.65 16 27 C 0.09 2.76 5.29 86.34 0.46 3.22 16 28 H 0.11 2.48 8.01 -2.91 -0.02 2.46 16 29 H 0.08 2.46 2.97 -2.91 -0.01 2.46 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.55 6.16 -2.39 -0.01 0.53 16 32 H 0.08 0.75 8.03 -2.39 -0.02 0.73 16 33 H 0.10 0.66 6.28 -2.39 -0.01 0.65 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.88 4.54 -2.39 -0.01 0.87 16 36 H 0.04 0.93 7.95 -2.38 -0.02 0.91 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.17 7.84 -2.39 -0.02 1.15 16 39 H 0.13 1.94 3.32 -2.39 -0.01 1.94 16 40 H 0.10 1.49 7.99 -2.39 -0.02 1.47 16 41 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.05 1.43 4.52 -2.39 -0.01 1.42 16 43 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.08 2.88 2.90 -2.39 -0.01 2.88 16 45 H 0.00 0.19 7.83 -2.39 -0.02 0.17 16 46 H 0.03 1.86 6.33 -2.39 -0.02 1.85 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 48 H 0.02 0.78 7.83 -2.39 -0.02 0.76 16 49 H 0.05 2.31 7.93 -2.39 -0.02 2.30 16 50 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 51 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 52 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.08 2.62 7.08 -2.39 -0.02 2.60 16 Total: -1.00 -74.17 376.05 4.66 -69.51 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.91 Total: 18.30 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.50 Total: 4.98 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -3.39 Total: -106.07 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.39 Total: -34.84 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -74.17 4.66 -69.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949154517.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.853 kcal (2) G-P(sol) polarization free energy of solvation -74.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds