Wall clock time and date at job start Tue Mar 31 2020 19:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00673 * 2 1 4 4 C 1.53008 * 109.46696 * 7.36857 * 3 2 1 5 5 C 1.52998 * 109.47636 * 247.36992 * 3 2 1 6 6 C 1.53000 * 109.47089 * 60.86786 * 5 3 2 7 7 C 1.50698 * 109.47327 * 127.36635 * 3 2 1 8 8 O 1.21274 * 120.00372 * 116.70444 * 7 3 2 9 9 N 1.34778 * 119.99991 * 296.70987 * 7 3 2 10 10 C 1.46931 * 120.64185 * 5.01444 * 9 7 3 11 11 C 1.53627 * 108.53477 * 126.30081 * 10 9 7 12 12 C 1.52991 * 109.27554 * 54.80723 * 11 10 9 13 13 C 1.52990 * 109.63560 * 298.66016 * 12 11 10 14 14 C 1.46934 * 120.64485 * 185.30153 * 9 7 3 15 15 C 1.53260 * 109.36306 * 178.71859 * 12 11 10 16 16 N 1.47155 * 108.40950 * 187.91673 * 15 12 11 17 17 C 1.36940 * 120.98928 * 230.49536 * 16 15 12 18 18 H 1.07994 * 120.00371 * 150.96618 * 17 16 15 19 19 C 1.38815 * 119.99386 * 330.96659 * 17 16 15 20 20 N 1.31620 * 120.00285 * 343.53758 * 19 17 16 21 21 Si 1.86801 * 119.99845 * 163.53394 * 19 17 16 22 22 H 1.48498 * 109.47101 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47048 * 119.99974 * 21 19 17 24 24 H 1.48494 * 109.47426 * 239.99898 * 21 19 17 25 25 C 1.47158 * 118.02939 * 50.47055 * 16 15 12 26 26 C 1.53296 * 108.37271 * 309.41107 * 25 16 15 27 27 O 1.42897 * 109.54695 * 58.91675 * 12 11 10 28 28 H 1.08000 * 120.00314 * 174.21352 * 1 2 3 29 29 H 1.08006 * 119.99549 * 353.93698 * 1 2 3 30 30 H 1.08006 * 119.99679 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46842 * 64.49778 * 4 3 2 32 32 H 1.09002 * 109.46849 * 184.49529 * 4 3 2 33 33 H 1.08992 * 109.47187 * 304.49763 * 4 3 2 34 34 H 1.08995 * 109.47395 * 180.86573 * 5 3 2 35 35 H 1.09001 * 109.46772 * 300.86998 * 5 3 2 36 36 H 1.08996 * 109.47198 * 186.36531 * 6 5 3 37 37 H 1.09001 * 109.47415 * 306.36414 * 6 5 3 38 38 H 1.08999 * 109.47304 * 66.35936 * 6 5 3 39 39 H 1.08994 * 109.59233 * 246.12613 * 10 9 7 40 40 H 1.09000 * 109.59129 * 6.56513 * 10 9 7 41 41 H 1.09006 * 109.62911 * 294.80425 * 11 10 9 42 42 H 1.09001 * 109.43048 * 174.68862 * 11 10 9 43 43 H 1.08998 * 109.48921 * 301.24215 * 13 12 11 44 44 H 1.08997 * 109.51012 * 181.18375 * 13 12 11 45 45 H 1.09005 * 109.58336 * 353.43658 * 14 9 7 46 46 H 1.08999 * 109.58640 * 113.71507 * 14 9 7 47 47 H 1.09004 * 109.67380 * 307.63982 * 15 12 11 48 48 H 1.08998 * 109.67921 * 68.14717 * 15 12 11 49 49 H 0.97001 * 120.00188 * 180.02562 * 20 19 17 50 50 H 1.09007 * 109.67934 * 69.12656 * 25 16 15 51 51 H 1.08995 * 109.68515 * 189.68686 * 25 16 15 52 52 H 1.08994 * 109.51519 * 172.27565 * 26 25 16 53 53 H 1.08999 * 109.50916 * 292.42449 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0797 2.4620 0.1850 5 6 2.7993 1.4691 -1.3314 6 6 1.7844 1.4871 -2.4761 7 6 3.0615 1.3088 1.1292 8 8 4.2487 1.3705 0.8892 9 7 2.6347 1.2435 2.4059 10 6 1.2094 1.0580 2.7105 11 6 1.0633 -0.1520 3.6457 12 6 1.9478 0.0518 4.8773 13 6 3.4123 0.1551 4.4469 14 6 3.5850 1.3627 3.5203 15 6 1.7792 -1.1393 5.8268 16 7 2.4847 -0.8364 7.0821 17 6 3.3717 -1.7273 7.6251 18 1 4.1978 -1.3709 8.2225 19 6 3.2089 -3.0886 7.4076 20 7 2.0571 -3.5522 6.9705 21 14 4.6244 -4.2627 7.7351 22 1 5.8015 -3.4965 8.2176 23 1 4.2198 -5.2499 8.7681 24 1 4.9771 -4.9750 6.4809 25 6 2.2093 0.4526 7.7365 26 6 2.3602 1.5659 6.6936 27 8 1.5612 1.2516 5.5503 28 1 -0.5401 -0.9305 -0.0943 29 1 -0.5400 0.9302 0.0988 30 1 1.8499 -0.9354 -0.0004 31 1 0.6138 2.3891 1.1678 32 1 1.6134 3.4091 0.1053 33 1 0.3110 2.4121 -0.5861 34 1 3.3568 2.4057 -1.3254 35 1 3.4891 0.6366 -1.4704 36 1 2.3122 1.4902 -3.4297 37 1 1.1511 0.6021 -2.4142 38 1 1.1665 2.3818 -2.3999 39 1 0.8211 1.9509 3.2005 40 1 0.6590 0.8766 1.7873 41 1 1.3705 -1.0579 3.1231 42 1 0.0228 -0.2463 3.9568 43 1 3.7009 -0.7533 3.9182 44 1 4.0426 0.2792 5.3275 45 1 4.6032 1.3825 3.1317 46 1 3.3869 2.2812 4.0727 47 1 0.7204 -1.2993 6.0303 48 1 2.2049 -2.0340 5.3725 49 1 1.9433 -4.5035 6.8189 50 1 1.1932 0.4543 8.1310 51 1 2.9192 0.6113 8.5483 52 1 2.0283 2.5122 7.1206 53 1 3.4056 1.6467 6.3960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949458625.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:34 Heat of formation + Delta-G solvation = -41.307948 kcal Electronic energy + Delta-G solvation = -32271.480716 eV Core-core repulsion = 28337.183262 eV Total energy + Delta-G solvation = -3934.297454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.07852 -40.65911 -38.02509 -37.53181 -36.16652 -33.77969 -33.22077 -32.94073 -32.03335 -30.14549 -29.59127 -28.35492 -26.99844 -25.30228 -24.67904 -24.37456 -22.89195 -22.31717 -21.23312 -20.19653 -19.18773 -18.81931 -18.10931 -17.30025 -17.15383 -16.65053 -16.52829 -16.19141 -15.90860 -15.60407 -15.52209 -15.36383 -15.29477 -15.08378 -14.62652 -14.49581 -14.05433 -13.84249 -13.72387 -13.47458 -13.39329 -13.22661 -12.83516 -12.78995 -12.69730 -12.66326 -12.52412 -12.43119 -12.31191 -12.18005 -12.12884 -12.08933 -11.78257 -11.70542 -11.64718 -11.45854 -11.01936 -10.94075 -10.72404 -10.47007 -9.91683 -9.63413 -8.67542 -7.91849 -5.39981 1.26714 1.40499 1.43575 1.52763 1.61005 2.00944 2.44369 2.88932 3.21883 3.45155 3.53358 3.71889 3.80932 3.86523 3.92631 3.99767 4.07600 4.11859 4.29003 4.34485 4.37452 4.43956 4.49349 4.52311 4.54929 4.63896 4.67547 4.70170 4.73629 4.80517 4.84645 4.90550 4.94011 4.98173 4.99118 5.07612 5.08304 5.12686 5.16617 5.21208 5.25369 5.32050 5.37291 5.46984 5.50419 5.56508 5.60867 5.70498 5.76124 6.30241 6.42701 6.44292 7.07074 7.12965 7.75671 8.30519 9.13094 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.003519 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.736314 B = 7955.730373 C = 8396.410113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.162 4.162 3 C -0.043 4.043 4 C -0.158 4.158 5 C -0.092 4.092 6 C -0.146 4.146 7 C 0.518 3.482 8 O -0.589 6.589 9 N -0.600 5.600 10 C 0.101 3.899 11 C -0.113 4.113 12 C 0.108 3.892 13 C -0.134 4.134 14 C 0.124 3.876 15 C 0.171 3.829 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.067 0.933 19 C -0.045 4.045 20 N -0.931 5.931 21 Si 0.960 3.040 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.292 1.292 25 C 0.105 3.895 26 C 0.052 3.948 27 O -0.377 6.377 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.078 0.922 47 H -0.002 1.002 48 H 0.052 0.948 49 H 0.250 0.750 50 H 0.016 0.984 51 H 0.066 0.934 52 H 0.117 0.883 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 13.150 -15.694 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.046 4.046 4 C -0.215 4.215 5 C -0.130 4.130 6 C -0.203 4.203 7 C 0.308 3.692 8 O -0.470 6.470 9 N -0.331 5.331 10 C -0.020 4.020 11 C -0.151 4.151 12 C 0.067 3.933 13 C -0.172 4.172 14 C 0.002 3.998 15 C 0.045 3.955 16 N -0.334 5.334 17 C -0.391 4.391 18 H 0.084 0.916 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.219 1.219 25 C -0.021 4.021 26 C -0.025 4.025 27 O -0.296 6.296 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.146 0.854 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.017 0.983 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.034 0.966 51 H 0.085 0.915 52 H 0.135 0.865 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.866 13.147 -15.862 21.421 hybrid contribution 1.302 -1.654 1.008 2.334 sum -4.564 11.493 -14.854 19.327 Atomic orbital electron populations 1.24300 0.94815 1.04291 0.96778 1.22547 0.96646 0.95912 1.02938 1.19919 0.94876 0.96805 0.92986 1.22345 0.98872 0.95711 1.04562 1.21261 0.97749 1.01683 0.92355 1.21815 0.98741 1.03032 0.96688 1.21223 0.89366 0.74480 0.84175 1.90634 1.19476 1.52444 1.84399 1.48153 1.09195 1.70719 1.05021 1.22518 0.80311 0.98001 1.01211 1.21893 1.00502 0.98959 0.93763 1.21895 0.93234 0.85963 0.92170 1.22127 0.97928 0.97988 0.99173 1.21397 0.93545 0.97840 0.87048 1.21097 0.93546 0.94989 0.85882 1.44282 1.49527 1.16715 1.22901 1.19463 1.03205 0.87098 1.29309 0.91579 1.25771 0.98296 0.98565 1.01448 1.70170 1.23368 1.12815 1.51316 0.85313 0.79787 0.79043 0.76989 1.19112 1.21720 1.21886 1.21785 0.98218 0.86634 0.95446 1.23052 0.95327 0.97936 0.86223 1.87775 1.57546 1.41906 1.42383 0.86575 0.85409 0.88360 0.90262 0.92005 0.88151 0.92268 0.93358 0.92205 0.91745 0.91040 0.89851 0.85409 0.91245 0.89271 0.93453 0.91094 0.90934 0.90355 0.98349 0.92966 0.94089 0.96580 0.91534 0.86470 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 11.80 67.78 0.80 -1.29 16 2 C -0.16 -2.94 6.11 25.65 0.16 -2.78 16 3 C -0.04 -0.87 0.51 -53.67 -0.03 -0.90 16 4 C -0.16 -2.26 6.50 71.98 0.47 -1.80 16 5 C -0.09 -1.87 4.27 30.59 0.13 -1.74 16 6 C -0.15 -1.98 9.22 71.98 0.66 -1.31 16 7 C 0.52 15.11 6.47 87.66 0.57 15.67 16 8 O -0.59 -21.87 15.41 -3.01 -0.05 -21.91 16 9 N -0.60 -16.91 2.96 -818.05 -2.42 -19.33 16 10 C 0.10 2.37 4.12 86.51 0.36 2.72 16 11 C -0.11 -3.35 5.12 30.80 0.16 -3.19 16 12 C 0.11 3.96 0.68 -10.71 -0.01 3.95 16 13 C -0.13 -4.91 4.33 30.65 0.13 -4.78 16 14 C 0.12 3.93 6.20 86.36 0.54 4.47 16 15 C 0.17 8.13 4.07 86.34 0.35 8.48 16 16 N -0.61 -30.29 2.54 -697.58 -1.77 -32.06 16 17 C -0.26 -14.22 9.62 84.03 0.81 -13.41 16 18 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 19 C -0.04 -2.50 4.93 84.86 0.42 -2.08 16 20 N -0.93 -54.77 11.33 21.65 0.25 -54.52 16 21 Si 0.96 45.09 29.58 68.60 2.03 47.12 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.10 4.25 6.73 86.35 0.58 4.83 16 26 C 0.05 1.70 6.60 72.08 0.48 2.18 16 27 O -0.38 -12.97 9.00 -148.98 -1.34 -14.31 16 28 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 29 H 0.13 1.12 5.61 -2.91 -0.02 1.10 16 30 H 0.10 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.08 1.09 4.63 -2.39 -0.01 1.08 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.92 5.63 -2.39 -0.01 0.91 16 34 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.05 1.16 8.09 -2.39 -0.02 1.14 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.83 6.81 -2.39 -0.02 0.81 16 38 H 0.07 0.75 6.88 -2.39 -0.02 0.74 16 39 H 0.08 1.86 7.68 -2.39 -0.02 1.84 16 40 H 0.13 2.33 2.01 -2.39 0.00 2.33 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.84 6.16 -2.39 -0.01 2.82 16 45 H 0.07 2.48 7.00 -2.38 -0.02 2.47 16 46 H 0.08 2.30 7.83 -2.39 -0.02 2.28 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.05 2.83 6.35 -2.39 -0.02 2.81 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.02 0.68 8.14 -2.38 -0.02 0.67 16 51 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 52 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 53 H 0.05 1.61 6.29 -2.39 -0.02 1.60 16 Total: -1.00 -69.54 383.90 4.16 -65.38 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.89 Total: 20.59 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.57 Total: 9.05 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.95 Total: -105.92 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.39 Total: -36.22 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.54 4.16 -65.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949458625.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.073 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds