Wall clock time and date at job start Tue Mar 31 2020 19:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47056 * 2 1 4 4 C 1.52995 * 109.47452 * 239.99695 * 2 1 3 5 5 C 1.53005 * 109.47025 * 306.59936 * 4 2 1 6 6 C 1.53176 * 109.53990 * 290.09608 * 5 4 2 7 7 C 1.53107 * 109.15401 * 183.24330 * 6 5 4 8 8 O 1.42901 * 109.48830 * 57.47135 * 7 6 5 9 9 C 1.42901 * 114.10139 * 298.89018 * 8 7 6 10 10 C 1.53095 * 109.41266 * 61.15509 * 9 8 7 11 11 C 1.50695 * 109.47039 * 119.99483 * 2 1 3 12 12 O 1.21290 * 120.00285 * 1.07663 * 11 2 1 13 13 N 1.34777 * 120.00083 * 181.07468 * 11 2 1 14 14 C 1.47865 * 126.94359 * 354.58294 * 13 11 2 15 15 C 1.56019 * 105.10265 * 181.98248 * 14 13 11 16 16 H 1.08999 * 116.89867 * 159.20822 * 15 14 13 17 17 C 1.57078 * 99.61024 * 32.80426 * 15 14 13 18 18 C 1.49294 * 126.94566 * 174.55780 * 13 11 2 19 19 H 1.09002 * 116.15314 * 16.72382 * 18 13 11 20 20 C 1.55994 * 104.31825 * 246.63895 * 18 13 11 21 21 N 1.47874 * 105.11208 * 289.11177 * 20 18 13 22 22 C 1.36939 * 126.94493 * 181.87435 * 21 20 18 23 23 H 1.07995 * 119.99993 * 179.97438 * 22 21 20 24 24 C 1.38815 * 119.99511 * 359.68578 * 22 21 20 25 25 N 1.31617 * 120.00324 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99678 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47278 * 89.99691 * 26 24 22 28 28 H 1.48498 * 109.47368 * 210.00236 * 26 24 22 29 29 H 1.48502 * 109.47026 * 330.00090 * 26 24 22 30 30 H 1.08997 * 109.47446 * 305.38952 * 1 2 3 31 31 H 1.09003 * 109.47312 * 65.38834 * 1 2 3 32 32 H 1.09001 * 109.47214 * 185.38720 * 1 2 3 33 33 H 1.08996 * 109.47221 * 175.90779 * 3 2 1 34 34 H 1.08999 * 109.46874 * 295.90788 * 3 2 1 35 35 H 1.08994 * 109.47027 * 55.90431 * 3 2 1 36 36 H 1.09008 * 109.46936 * 66.59454 * 4 2 1 37 37 H 1.08997 * 109.47173 * 186.59607 * 4 2 1 38 38 H 1.08995 * 109.54370 * 50.27230 * 5 4 2 39 39 H 1.08998 * 109.52574 * 303.05524 * 6 5 4 40 40 H 1.08996 * 109.52357 * 63.25090 * 6 5 4 41 41 H 1.09002 * 109.40571 * 297.49426 * 7 6 5 42 42 H 1.08997 * 109.48583 * 177.50808 * 7 6 5 43 43 H 1.09001 * 109.47698 * 301.17736 * 9 8 7 44 44 H 1.09001 * 109.49065 * 181.14731 * 9 8 7 45 45 H 1.09000 * 109.51920 * 182.48668 * 10 9 8 46 46 H 1.08999 * 109.52171 * 62.30357 * 10 9 8 47 47 H 1.08997 * 110.32024 * 63.07478 * 14 13 11 48 48 H 1.09004 * 110.31710 * 300.88471 * 14 13 11 49 49 H 1.09000 * 112.36976 * 64.27747 * 17 15 14 50 50 H 1.09006 * 112.36768 * 191.71520 * 17 15 14 51 51 H 1.08995 * 110.41907 * 170.14391 * 20 18 13 52 52 H 1.09002 * 110.20456 * 47.96621 * 20 18 13 53 53 H 0.97004 * 119.99682 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.3992 -2.1080 -1.3347 6 6 1.9619 -3.0018 -0.2253 7 6 1.3762 -4.4091 -0.3684 8 8 1.6821 -4.9230 -1.6663 9 6 1.1397 -4.1534 -2.7413 10 6 1.7175 -2.7365 -2.6949 11 6 2.0323 -0.7103 1.2305 12 8 1.2443 -1.1882 2.0190 13 7 3.3571 -0.8145 1.4548 14 6 4.4476 -0.3917 0.5501 15 6 5.7641 -0.7920 1.2855 16 1 6.6595 -0.8952 0.6726 17 6 5.2681 -2.0858 2.0255 18 6 4.0203 -1.3797 2.6671 19 1 3.3942 -1.9928 3.3154 20 6 4.7282 -0.1555 3.3257 21 7 5.8527 0.1713 2.4226 22 6 6.7893 1.1548 2.5971 23 1 7.5677 1.2958 1.8619 24 6 6.7348 1.9745 3.7161 25 7 5.7831 1.8060 4.6096 26 14 8.0129 3.3158 3.9546 27 1 7.5379 4.5710 3.3189 28 1 8.2246 3.5454 5.4063 29 1 9.2925 2.8972 3.3279 30 1 -0.3634 0.5951 0.8377 31 1 -0.3634 0.4280 -0.9343 32 1 -0.3634 -1.0231 0.0965 33 1 3.1275 1.4435 0.0733 34 1 1.7377 1.9347 -0.9244 35 1 1.6180 1.9771 0.8510 36 1 1.7763 -0.1438 -2.1353 37 1 3.1236 -0.8246 -1.1920 38 1 0.3192 -2.0184 -1.2182 39 1 3.0474 -3.0499 -0.3116 40 1 1.6907 -2.5901 0.7468 41 1 0.2946 -4.3661 -0.2402 42 1 1.8068 -5.0612 0.3915 43 1 0.0550 -4.1070 -2.6440 44 1 1.3998 -4.6212 -3.6909 45 1 1.2717 -2.1352 -3.4872 46 1 2.7979 -2.7790 -2.8327 47 1 4.4139 0.6866 0.3948 48 1 4.3727 -0.9148 -0.4033 49 1 4.9856 -2.8778 1.3320 50 1 5.9791 -2.4332 2.7751 51 1 5.1017 -0.4192 4.3151 52 1 4.0394 0.6867 3.3924 53 1 5.7453 2.3786 5.3917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032709053.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:59 Heat of formation + Delta-G solvation = -40.219614 kcal Electronic energy + Delta-G solvation = -32705.562977 eV Core-core repulsion = 28771.312716 eV Total energy + Delta-G solvation = -3934.250260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25486 -40.48690 -39.50440 -37.18494 -35.42281 -34.36199 -33.13769 -31.94411 -30.76882 -30.23215 -28.59655 -28.13610 -26.95807 -25.79595 -24.58542 -24.21474 -23.23870 -21.54858 -21.14723 -20.70061 -19.89831 -18.60756 -17.63681 -17.33860 -17.22403 -16.89893 -16.54700 -16.39095 -15.96831 -15.66395 -15.52966 -15.23665 -14.93570 -14.60817 -14.22167 -14.17280 -13.99017 -13.70762 -13.56004 -13.29918 -13.14746 -13.03507 -12.92902 -12.79388 -12.78182 -12.65415 -12.60453 -12.40741 -12.21715 -12.12723 -12.07248 -12.01528 -11.92348 -11.76580 -11.47876 -11.33065 -11.19587 -10.98122 -10.79336 -10.48065 -10.33607 -9.44207 -8.88291 -7.83529 -5.18884 1.47117 1.48000 1.56681 1.71896 2.06460 2.48804 3.01270 3.32886 3.36392 3.51685 3.57872 3.74673 3.77913 3.89117 3.92162 4.02293 4.09189 4.16010 4.17953 4.21816 4.29522 4.36042 4.39975 4.53375 4.58190 4.64625 4.69838 4.76410 4.78718 4.82988 4.84772 4.89200 4.90412 4.93444 4.99901 5.04203 5.06043 5.11239 5.12762 5.17853 5.23517 5.25741 5.28140 5.35909 5.40326 5.47574 5.56600 5.60306 5.66573 6.10538 6.31241 6.75259 7.04010 7.25271 7.72159 8.42774 9.27380 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003649 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.012759 B = 7670.926829 C = 8077.488573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.089 4.089 6 C -0.172 4.172 7 C 0.067 3.933 8 O -0.403 6.403 9 C 0.053 3.947 10 C -0.142 4.142 11 C 0.544 3.456 12 O -0.595 6.595 13 N -0.602 5.602 14 C 0.086 3.914 15 C 0.133 3.867 16 H 0.132 0.868 17 C -0.130 4.130 18 C 0.101 3.899 19 H 0.108 0.892 20 C 0.191 3.809 21 N -0.614 5.614 22 C -0.228 4.228 23 H 0.095 0.905 24 C -0.069 4.069 25 N -0.957 5.957 26 Si 0.974 3.026 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.263 1.263 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.076 0.924 51 H 0.013 0.987 52 H -0.003 1.003 53 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 -8.756 -18.616 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.205 4.205 4 C -0.144 4.144 5 C -0.107 4.107 6 C -0.209 4.209 7 C -0.010 4.010 8 O -0.322 6.322 9 C -0.023 4.023 10 C -0.179 4.179 11 C 0.336 3.664 12 O -0.478 6.478 13 N -0.333 5.333 14 C -0.038 4.038 15 C 0.027 3.973 16 H 0.149 0.851 17 C -0.169 4.169 18 C -0.002 4.002 19 H 0.126 0.874 20 C 0.065 3.935 21 N -0.338 5.338 22 C -0.357 4.357 23 H 0.113 0.887 24 C -0.262 4.262 25 N -0.606 5.606 26 Si 0.804 3.196 27 H -0.217 1.217 28 H -0.231 1.231 29 H -0.187 1.187 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.095 0.905 51 H 0.032 0.968 52 H 0.015 0.985 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.643 -8.955 -18.113 21.977 hybrid contribution 0.325 1.383 1.552 2.104 sum -8.318 -7.572 -16.561 20.020 Atomic orbital electron populations 1.21700 0.91801 1.02217 1.02309 1.20802 0.97883 0.95947 0.93002 1.22032 1.01973 0.93580 1.02900 1.21955 1.01582 0.95127 0.95740 1.21286 1.00574 0.94008 0.94880 1.22664 1.01003 0.96304 1.00978 1.22481 0.98963 0.94735 0.84787 1.87888 1.77068 1.52393 1.14892 1.22772 0.97413 0.91730 0.90366 1.22194 1.02301 0.96489 0.96957 1.20630 0.80221 0.78000 0.87585 1.90623 1.55405 1.51275 1.50459 1.49169 1.04795 1.59908 1.19448 1.23554 0.87206 0.99852 0.93191 1.23604 0.95783 0.88290 0.89663 0.85069 1.24046 0.95688 0.97125 1.00090 1.24059 0.92705 0.95215 0.88270 0.87366 1.21457 0.88037 0.92140 0.91863 1.45457 1.30118 1.35979 1.22291 1.19523 1.04892 1.06564 1.04684 0.88699 1.25615 1.00698 1.02348 0.97531 1.70164 1.35750 1.41884 1.12803 0.85128 0.79243 0.79166 0.76102 1.21717 1.23053 1.18727 0.94260 0.89187 0.92311 0.91949 0.88582 0.94627 0.88069 0.90196 0.90559 0.91901 0.90613 0.93449 0.89473 0.92862 0.87473 0.88653 0.91197 0.91670 0.88206 0.88436 0.90527 0.96844 0.98512 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 7.13 71.98 0.51 -2.36 16 2 C -0.07 -1.85 0.53 -52.93 -0.03 -1.88 16 3 C -0.15 -3.81 8.35 71.98 0.60 -3.21 16 4 C -0.11 -1.99 3.85 30.59 0.12 -1.87 16 5 C -0.09 -1.67 1.98 -10.67 -0.02 -1.69 16 6 C -0.17 -4.12 4.50 30.69 0.14 -3.98 16 7 C 0.07 1.53 6.84 72.02 0.49 2.02 16 8 O -0.40 -9.13 10.77 -148.98 -1.60 -10.73 16 9 C 0.05 0.85 6.84 72.01 0.49 1.34 16 10 C -0.14 -2.04 5.41 30.68 0.17 -1.88 16 11 C 0.54 18.46 3.72 87.66 0.33 18.79 16 12 O -0.59 -24.34 14.79 -3.06 -0.05 -24.39 16 13 N -0.60 -20.48 2.78 -768.37 -2.14 -22.62 16 14 C 0.09 2.57 4.79 87.16 0.42 2.99 16 15 C 0.13 4.49 5.53 46.93 0.26 4.75 16 16 H 0.13 3.76 8.14 -2.39 -0.02 3.74 16 17 C -0.13 -4.10 6.80 33.46 0.23 -3.87 16 18 C 0.10 3.87 5.25 46.92 0.25 4.12 16 19 H 0.11 4.20 8.04 -2.39 -0.02 4.18 16 20 C 0.19 9.45 4.77 87.15 0.42 9.86 16 21 N -0.61 -28.86 3.02 -648.59 -1.96 -30.82 16 22 C -0.23 -11.87 10.38 84.03 0.87 -11.00 16 23 H 0.10 4.56 7.83 -2.91 -0.02 4.54 16 24 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 25 N -0.96 -57.96 10.56 21.65 0.23 -57.73 16 26 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 27 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.45 6.23 -2.39 -0.01 1.43 16 33 H 0.06 1.80 4.61 -2.39 -0.01 1.79 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.35 8.12 -2.38 -0.02 1.34 16 37 H 0.08 1.53 4.27 -2.39 -0.01 1.52 16 38 H 0.08 1.46 5.90 -2.39 -0.01 1.45 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 2.30 3.84 -2.39 -0.01 2.29 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 2.20 5.49 -2.39 -0.01 2.19 16 48 H 0.10 2.28 5.51 -2.38 -0.01 2.26 16 49 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 50 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 51 H 0.01 0.76 7.47 -2.39 -0.02 0.74 16 52 H 0.00 -0.20 7.66 -2.39 -0.02 -0.21 16 53 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.56 382.21 3.11 -67.45 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.89 Total: 23.18 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.70 Total: 8.75 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.87 Total: -111.17 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.65 Total: -35.12 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.56 3.11 -67.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032709053.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.233 kcal (2) G-P(sol) polarization free energy of solvation -70.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds