Wall clock time and date at job start Tue Mar 31 2020 19:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47454 * 2 1 4 4 C 1.52999 * 109.47082 * 239.99219 * 2 1 3 5 5 C 1.53002 * 109.46549 * 119.99507 * 2 1 3 6 6 C 1.53776 * 113.61703 * 63.72134 * 5 2 1 7 7 C 1.53778 * 87.08530 * 139.97683 * 6 5 2 8 8 C 1.50697 * 113.61325 * 89.11891 * 7 6 5 9 9 O 1.21282 * 120.00206 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99768 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.97413 * 322.29916 * 11 10 8 13 13 C 1.55008 * 111.10887 * 86.45034 * 11 10 8 14 14 O 1.43917 * 105.18193 * 81.95725 * 13 11 10 15 15 C 1.42390 * 109.55515 * 24.29256 * 14 13 11 16 16 C 1.52706 * 116.14404 * 129.85195 * 15 14 13 17 17 N 1.47211 * 87.79485 * 90.70342 * 16 15 14 18 18 C 1.36940 * 135.97336 * 206.43859 * 17 16 15 19 19 H 1.07993 * 119.99664 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99968 * 179.72344 * 18 17 16 21 21 N 1.31619 * 120.00040 * 0.27397 * 20 18 17 22 22 Si 1.86797 * 119.99919 * 180.27334 * 20 18 17 23 23 H 1.48505 * 109.47112 * 60.00013 * 22 20 18 24 24 H 1.48504 * 109.47104 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47171 * 300.00227 * 22 20 18 26 26 C 1.47207 * 88.05603 * 26.69139 * 17 16 15 27 27 C 1.53658 * 108.53648 * 358.08836 * 15 14 13 28 28 C 1.53782 * 87.08168 * 334.56859 * 7 6 5 29 29 H 1.09002 * 109.47450 * 300.00787 * 1 2 3 30 30 H 1.09006 * 109.46860 * 60.00375 * 1 2 3 31 31 H 1.08993 * 109.47683 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47756 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46781 * 299.99674 * 3 2 1 34 34 H 1.09002 * 109.47435 * 59.99203 * 3 2 1 35 35 H 1.08995 * 109.47639 * 293.49425 * 4 2 1 36 36 H 1.08993 * 109.47129 * 53.50157 * 4 2 1 37 37 H 1.09008 * 109.46705 * 173.49633 * 4 2 1 38 38 H 1.08998 * 112.85399 * 292.52048 * 5 2 1 39 39 H 1.09008 * 113.61572 * 25.42606 * 6 5 2 40 40 H 1.08998 * 113.61663 * 254.52639 * 6 5 2 41 41 H 1.08998 * 113.61601 * 219.93623 * 7 6 5 42 42 H 0.96993 * 120.00072 * 359.97438 * 10 8 7 43 43 H 1.09001 * 110.30637 * 323.03067 * 13 11 10 44 44 H 1.09001 * 110.38639 * 200.92230 * 13 11 10 45 45 H 1.08999 * 113.49502 * 335.97453 * 16 15 14 46 46 H 1.08996 * 113.55836 * 205.44459 * 16 15 14 47 47 H 0.96998 * 120.00212 * 179.97438 * 21 20 18 48 48 H 1.09005 * 113.49629 * 88.03728 * 26 17 16 49 49 H 1.08995 * 113.50675 * 218.57826 * 26 17 16 50 50 H 1.09009 * 110.92976 * 97.29352 * 27 15 14 51 51 H 1.08993 * 110.93315 * 220.95786 * 27 15 14 52 52 H 1.08993 * 113.61789 * 139.98203 * 28 7 6 53 53 H 1.08997 * 113.61047 * 270.88489 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0398 -0.7212 1.2494 6 6 1.6570 -2.2096 1.3009 7 6 3.0672 -2.4724 1.8550 8 6 3.1508 -2.3883 3.3573 9 8 2.1588 -2.1325 4.0065 10 7 4.3283 -2.5963 3.9794 11 6 4.4096 -2.5140 5.4398 12 1 3.7740 -1.7150 5.8215 13 6 4.0535 -3.8724 6.0962 14 8 5.2610 -4.6524 6.0271 15 6 6.3858 -3.7832 5.9435 16 6 7.5212 -4.0554 6.9277 17 7 8.1159 -4.9371 5.9099 18 6 8.9450 -6.0270 5.9144 19 1 9.3144 -6.4204 6.8498 20 6 9.3063 -6.6291 4.7170 21 7 8.8564 -6.1493 3.5770 22 14 10.4312 -8.1204 4.7236 23 1 9.7959 -9.2162 5.4989 24 1 10.6639 -8.5712 3.3279 25 1 11.7285 -7.7591 5.3494 26 6 7.4340 -4.1302 4.8847 27 6 5.8805 -2.3324 5.9100 28 6 3.5029 -1.1822 1.1405 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.7749 -1.7771 -1.1928 36 1 1.5848 -0.2793 -2.1353 37 1 3.1238 -0.6217 -1.3092 38 1 1.8182 -0.1812 2.1699 39 1 1.4845 -2.6504 0.3189 40 1 0.8605 -2.4313 2.0112 41 1 3.5327 -3.3731 1.4549 42 1 5.1217 -2.8005 3.4602 43 1 3.2542 -4.3629 5.5407 44 1 3.7568 -3.7260 7.1347 45 1 7.2005 -4.5830 7.8260 46 1 8.1265 -3.1763 7.1484 47 1 9.1091 -6.5698 2.7402 48 1 8.0152 -3.2708 4.5505 49 1 7.0397 -4.7209 4.0579 50 1 5.9193 -1.8835 6.9027 51 1 6.4480 -1.7388 5.1934 52 1 4.1966 -0.5744 1.7213 53 1 3.8351 -1.3421 0.1148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054020920.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:04 Heat of formation + Delta-G solvation = -29.004571 kcal Electronic energy + Delta-G solvation = -30402.139921 eV Core-core repulsion = 26468.375981 eV Total energy + Delta-G solvation = -3933.763940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98980 -41.27087 -39.45699 -37.84711 -35.66144 -35.41593 -34.17494 -31.83819 -29.97634 -28.40450 -28.14697 -27.42620 -27.01393 -26.49495 -26.15577 -24.01467 -23.30305 -21.97231 -20.66185 -20.56313 -19.33370 -18.74488 -17.83231 -17.62481 -17.03011 -16.84339 -16.50276 -16.18083 -16.01845 -15.65719 -15.51916 -15.11272 -14.97136 -14.87739 -14.61152 -14.36767 -14.12353 -13.70525 -13.64313 -13.34207 -13.16327 -13.12165 -12.94293 -12.81502 -12.69100 -12.57628 -12.54070 -12.44841 -12.32374 -12.28903 -12.02522 -11.91321 -11.76166 -11.55760 -11.36390 -11.32556 -10.94803 -10.92163 -10.81196 -10.71429 -10.38685 -9.94338 -8.91249 -7.89893 -5.21682 1.44019 1.48095 1.53732 1.57889 2.14658 2.47154 2.80256 3.29495 3.36239 3.56576 3.60507 3.64887 3.66153 3.68718 3.78990 3.81830 3.99350 4.05233 4.13845 4.35412 4.35663 4.43607 4.64296 4.66474 4.70039 4.74486 4.75855 4.77372 4.78731 4.86246 4.87091 4.90424 4.91010 4.94474 5.02196 5.03139 5.08905 5.10500 5.16269 5.18809 5.27816 5.28177 5.29296 5.41376 5.47229 5.49773 5.50873 5.57003 5.69855 5.94547 6.34411 6.51814 6.92160 7.20792 7.60493 8.61250 9.27536 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.002568 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.670099 B =10901.874701 C =11906.518859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.139 4.139 4 C -0.147 4.147 5 C -0.091 4.091 6 C -0.112 4.112 7 C -0.148 4.148 8 C 0.534 3.466 9 O -0.574 6.574 10 N -0.710 5.710 11 C 0.119 3.881 12 H 0.118 0.882 13 C 0.036 3.964 14 O -0.372 6.372 15 C 0.075 3.925 16 C 0.108 3.892 17 N -0.641 5.641 18 C -0.230 4.230 19 H 0.080 0.920 20 C -0.067 4.067 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.275 1.275 26 C 0.153 3.847 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.409 0.591 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.248 0.752 48 H 0.041 0.959 49 H 0.037 0.963 50 H 0.122 0.878 51 H 0.105 0.895 52 H 0.068 0.932 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.702 16.493 -6.926 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 C -0.196 4.196 4 C -0.204 4.204 5 C -0.110 4.110 6 C -0.150 4.150 7 C -0.170 4.170 8 C 0.322 3.678 9 O -0.454 6.454 10 N -0.361 5.361 11 C 0.014 3.986 12 H 0.135 0.865 13 C -0.042 4.042 14 O -0.291 6.291 15 C 0.034 3.966 16 C -0.018 4.018 17 N -0.367 5.367 18 C -0.358 4.358 19 H 0.098 0.902 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.807 3.193 23 H -0.207 1.207 24 H -0.217 1.217 25 H -0.201 1.201 26 C 0.027 3.973 27 C -0.166 4.166 28 C -0.150 4.150 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.245 0.755 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.140 0.860 51 H 0.123 0.877 52 H 0.087 0.913 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.188 16.174 -6.570 23.139 hybrid contribution 1.104 -1.179 -0.085 1.617 sum -14.084 14.995 -6.655 21.622 Atomic orbital electron populations 1.21825 0.94568 1.01757 1.01509 1.20423 0.95532 0.95442 0.94338 1.21833 1.01121 0.95096 1.01595 1.22033 1.01407 1.00501 0.96411 1.22504 0.95603 0.94982 0.97898 1.22911 0.94198 0.96602 1.01256 1.22437 1.01874 1.02340 0.90299 1.20534 0.82241 0.74621 0.90440 1.90645 1.36470 1.49966 1.68288 1.45957 1.11791 1.71174 1.07147 1.22525 0.97818 0.97599 0.80662 0.86463 1.24012 0.87259 0.91779 1.01108 1.88420 1.14360 1.32205 1.94117 1.23114 0.86619 0.89081 0.97804 1.22943 0.91653 0.93693 0.93464 1.45786 1.56521 1.29629 1.04748 1.19232 1.20388 1.02964 0.93230 0.90227 1.25610 1.02870 1.02619 0.94941 1.69982 1.49570 1.43393 0.96852 0.85148 0.78731 0.79075 0.76344 1.20726 1.21715 1.20080 1.22417 0.89274 0.92429 0.93178 1.23191 0.93567 0.94679 1.05155 1.23066 0.96864 0.93425 1.01658 0.93518 0.91989 0.92738 0.92497 0.92052 0.93391 0.92118 0.92180 0.91828 0.91113 0.87508 0.92329 0.87391 0.75543 0.91158 0.89533 0.93928 0.91067 0.94290 0.94109 0.94434 0.85971 0.87694 0.91329 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.31 71.98 0.60 -1.33 16 2 C -0.06 -0.79 0.68 -52.18 -0.04 -0.83 16 3 C -0.14 -1.82 8.43 71.98 0.61 -1.22 16 4 C -0.15 -1.73 7.49 71.98 0.54 -1.19 16 5 C -0.09 -1.60 2.69 -10.27 -0.03 -1.62 16 6 C -0.11 -2.13 6.03 31.12 0.19 -1.94 16 7 C -0.15 -3.04 4.34 -11.02 -0.05 -3.09 16 8 C 0.53 14.01 7.09 87.66 0.62 14.63 16 9 O -0.57 -18.36 15.50 -3.04 -0.05 -18.40 16 10 N -0.71 -18.01 5.24 -435.24 -2.28 -20.29 16 11 C 0.12 2.98 3.37 46.54 0.16 3.14 16 12 H 0.12 2.66 7.74 -2.38 -0.02 2.64 16 13 C 0.04 1.07 7.49 72.67 0.54 1.62 16 14 O -0.37 -14.92 11.18 -148.98 -1.67 -16.59 16 15 C 0.07 2.72 1.75 -10.67 -0.02 2.70 16 16 C 0.11 4.36 8.20 83.39 0.68 5.05 16 17 N -0.64 -33.88 3.78 -739.01 -2.80 -36.68 16 18 C -0.23 -13.39 10.74 84.03 0.90 -12.49 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.95 -57.71 11.51 21.65 0.25 -57.46 16 22 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.15 7.07 6.89 83.48 0.58 7.64 16 27 C -0.13 -3.08 5.97 31.67 0.19 -2.89 16 28 C -0.11 -1.85 6.87 31.12 0.21 -1.63 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.05 0.77 7.56 -2.39 -0.02 0.75 16 32 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.71 6.05 -2.39 -0.01 0.69 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.70 6.46 -2.38 -0.02 0.69 16 38 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 39 H 0.11 1.63 6.09 -2.38 -0.01 1.62 16 40 H 0.06 1.37 7.43 -2.39 -0.02 1.35 16 41 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.41 10.25 8.62 -92.71 -0.80 9.45 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 48 H 0.04 1.81 7.95 -2.38 -0.02 1.79 16 49 H 0.04 2.01 7.13 -2.39 -0.02 1.99 16 50 H 0.12 2.28 8.13 -2.38 -0.02 2.26 16 51 H 0.10 2.28 7.81 -2.39 -0.02 2.26 16 52 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 53 H 0.11 1.52 5.69 -2.39 -0.01 1.50 16 Total: -1.00 -73.94 408.38 1.73 -72.21 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.09 Total: 25.40 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.16 Total: 3.07 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -4.83 Total: -114.43 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.71 Total: -34.99 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -73.94 1.73 -72.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054020920.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.201 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds