Wall clock time and date at job start Tue Mar 31 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50704 * 120.00076 * 2 1 4 4 C 1.52999 * 109.47054 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47063 * 239.99612 * 3 2 1 6 6 C 1.50704 * 109.47129 * 119.99670 * 3 2 1 7 7 O 1.21281 * 120.00116 * 1.81184 * 6 3 2 8 8 N 1.34779 * 119.99804 * 181.80481 * 6 3 2 9 9 C 1.46925 * 120.62833 * 175.02020 * 8 6 3 10 10 C 1.53191 * 108.77563 * 233.58678 * 9 8 6 11 11 C 1.53040 * 109.31420 * 305.36628 * 10 9 8 12 12 C 1.52996 * 109.46192 * 181.38074 * 11 10 9 13 13 H 1.09000 * 110.67157 * 57.03914 * 12 11 10 14 14 O 1.44375 * 110.62336 * 294.07178 * 12 11 10 15 15 C 1.43737 * 106.97802 * 201.43845 * 14 12 11 16 16 C 1.54099 * 107.29663 * 26.51031 * 15 14 12 17 17 C 1.54814 * 104.18449 * 357.97244 * 16 15 14 18 18 H 1.09008 * 110.90617 * 97.31629 * 17 16 15 19 19 N 1.46496 * 110.90860 * 220.88500 * 17 16 15 20 20 C 1.36944 * 120.00056 * 270.67080 * 19 17 16 21 21 H 1.08002 * 119.99661 * 359.97438 * 20 19 17 22 22 C 1.38814 * 120.00115 * 179.97438 * 20 19 17 23 23 N 1.31615 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99900 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47200 * 89.99947 * 24 22 20 26 26 H 1.48500 * 109.46841 * 210.00254 * 24 22 20 27 27 H 1.48503 * 109.46829 * 330.00030 * 24 22 20 28 28 C 1.53042 * 109.53634 * 61.36323 * 11 10 9 29 29 C 1.46926 * 120.63087 * 354.99756 * 8 6 3 30 30 H 1.07997 * 120.00238 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00078 * 359.97438 * 1 2 3 32 32 H 1.08007 * 120.00123 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46774 * 166.42389 * 4 3 2 34 34 H 1.08993 * 109.47145 * 286.43020 * 4 3 2 35 35 H 1.09007 * 109.46937 * 46.42658 * 4 3 2 36 36 H 1.09000 * 109.47812 * 307.84871 * 5 3 2 37 37 H 1.09003 * 109.46962 * 67.84796 * 5 3 2 38 38 H 1.09004 * 109.47270 * 187.84181 * 5 3 2 39 39 H 1.09003 * 109.58485 * 113.79974 * 9 8 6 40 40 H 1.08998 * 109.58866 * 353.37231 * 9 8 6 41 41 H 1.08994 * 109.50033 * 185.41147 * 10 9 8 42 42 H 1.08997 * 109.49590 * 65.31636 * 10 9 8 43 43 H 1.09003 * 109.45812 * 301.35809 * 11 10 9 44 44 H 1.09001 * 109.88005 * 267.08990 * 15 14 12 45 45 H 1.09000 * 109.87991 * 145.93777 * 15 14 12 46 46 H 1.09001 * 110.49231 * 239.29801 * 16 15 14 47 47 H 1.09000 * 110.60256 * 116.69922 * 16 15 14 48 48 H 0.97003 * 120.00426 * 90.66842 * 19 17 16 49 49 H 0.97003 * 120.00054 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.49897 * 58.58962 * 28 11 10 51 51 H 1.09003 * 109.49767 * 178.68476 * 28 11 10 52 52 H 1.08996 * 109.58663 * 246.19936 * 29 8 6 53 53 H 1.09001 * 109.58862 * 6.62594 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9298 1.3850 1.2305 7 8 2.9600 0.4581 2.0122 8 7 3.6712 2.4864 1.4623 9 6 4.4357 2.6254 2.7093 10 6 4.0586 3.9534 3.3734 11 6 4.2690 5.0954 2.3767 12 6 3.9262 6.4271 3.0474 13 1 4.5266 6.5712 3.9457 14 8 2.5184 6.4909 3.3612 15 6 2.1812 7.8816 3.4968 16 6 3.1803 8.6811 2.6382 17 6 4.1303 7.6042 2.0599 18 1 3.8299 7.3218 1.0508 19 7 5.5197 8.0682 2.0785 20 6 6.0260 8.7568 1.0085 21 1 5.4011 8.9573 0.1508 22 6 7.3424 9.1970 1.0264 23 7 8.1040 8.9522 2.0715 24 14 8.0328 10.1368 -0.4329 25 1 7.8048 11.5912 -0.2378 26 1 9.4901 9.8749 -0.5457 27 1 7.3522 9.6914 -1.6754 28 6 3.3616 4.8881 1.1618 29 6 3.7308 3.5707 0.4726 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.5924 3.3934 0.2406 34 1 0.6126 2.5551 -0.9865 35 1 0.2944 2.2840 0.7437 36 1 3.5544 0.4866 -1.3221 37 1 2.3114 1.4688 -2.1336 38 1 3.5902 2.2607 -1.1818 39 1 5.5027 2.6182 2.4866 40 1 4.1946 1.8003 3.3796 41 1 4.6879 4.1140 4.2488 42 1 3.0123 3.9239 3.6774 43 1 5.3101 5.1086 2.0540 44 1 2.2655 8.1833 4.5409 45 1 1.1656 8.0532 3.1402 46 1 3.7351 9.3870 3.2562 47 1 2.6624 9.2042 1.8343 48 1 6.0811 7.8879 2.8487 49 1 9.0240 9.2595 2.0838 50 1 2.3218 4.8499 1.4866 51 1 3.4948 5.7140 0.4630 52 1 4.7402 3.6406 0.0675 53 1 3.0246 3.3693 -0.3330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071077168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:46 Heat of formation + Delta-G solvation = -35.509031 kcal Electronic energy + Delta-G solvation = -31284.251113 eV Core-core repulsion = 27350.205119 eV Total energy + Delta-G solvation = -3934.045994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.95109 -39.40392 -37.26362 -36.53927 -34.48823 -33.38621 -31.81544 -31.49446 -30.30969 -29.38822 -27.89978 -27.65823 -25.31752 -23.85939 -23.45623 -23.05423 -22.04068 -20.77802 -19.94631 -19.41345 -18.32641 -17.34633 -16.74658 -16.61385 -15.90109 -15.61388 -15.41425 -15.13865 -14.75829 -14.37412 -14.28906 -14.13301 -14.01301 -13.70256 -13.30375 -13.20157 -13.12576 -12.68679 -12.67253 -12.43249 -12.30466 -12.16896 -12.00734 -11.70259 -11.60046 -11.33539 -11.16911 -11.10117 -10.99558 -10.90352 -10.86797 -10.60353 -10.46875 -10.27717 -10.19930 -9.80735 -9.78010 -9.71906 -9.41637 -9.22924 -8.97747 -8.60676 -7.08283 -5.87377 -3.17446 2.06795 2.60636 3.03307 3.36342 3.41858 3.43612 4.23086 4.29018 4.43979 4.51271 4.67994 4.75268 4.79543 4.87879 4.98081 5.12414 5.16898 5.27256 5.30833 5.31925 5.40280 5.40867 5.45753 5.47979 5.48289 5.54230 5.59670 5.65183 5.68373 5.72427 5.73131 5.82201 5.87216 5.92888 5.99839 6.01667 6.08124 6.10151 6.20383 6.25307 6.32366 6.40522 6.43718 6.55681 6.57515 6.60626 6.66507 6.86138 7.31044 7.39826 7.60788 8.15020 8.30181 9.41816 9.96528 10.31258 11.34735 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.003108 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.246455 B = 9006.120840 C = 9696.389767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.055 4.055 4 C -0.164 4.164 5 C -0.155 4.155 6 C 0.528 3.472 7 O -0.544 6.544 8 N -0.604 5.604 9 C 0.111 3.889 10 C -0.126 4.126 11 C -0.071 4.071 12 C 0.074 3.926 13 H 0.067 0.933 14 O -0.378 6.378 15 C 0.050 3.950 16 C -0.182 4.182 17 C 0.155 3.845 18 H 0.068 0.932 19 N -0.713 5.713 20 C -0.243 4.243 21 H 0.071 0.929 22 C -0.009 4.009 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.129 4.129 29 C 0.082 3.918 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.073 0.927 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.508 -12.674 -3.556 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.139 4.139 3 C -0.058 4.058 4 C -0.221 4.221 5 C -0.212 4.212 6 C 0.316 3.684 7 O -0.422 6.422 8 N -0.337 5.337 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.090 4.090 12 C 0.015 3.985 13 H 0.085 0.915 14 O -0.297 6.297 15 C -0.027 4.027 16 C -0.223 4.223 17 C 0.044 3.956 18 H 0.086 0.914 19 N -0.354 5.354 20 C -0.374 4.374 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.167 4.167 29 C -0.040 4.040 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.091 0.909 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.558 -13.270 -3.275 19.252 hybrid contribution 0.792 0.946 -0.397 1.296 sum -12.766 -12.323 -3.672 18.120 Atomic orbital electron populations 1.23982 0.95914 1.02213 1.01318 1.22503 0.95599 0.96579 0.99170 1.19835 0.95690 0.95914 0.94338 1.22385 0.99092 0.97492 1.03144 1.22230 0.99741 1.03585 0.95632 1.20407 0.79365 0.81701 0.86903 1.90661 1.65905 1.37087 1.48512 1.48053 1.47364 1.18480 1.19758 1.21638 0.95261 0.98610 0.85556 1.21933 1.02697 0.93502 0.98265 1.21082 1.00530 0.92618 0.94732 1.23352 0.82225 0.95553 0.97332 0.91526 1.88786 1.24958 1.24046 1.91886 1.23035 0.98738 0.82120 0.98836 1.23694 0.98335 1.00466 0.99840 1.21804 0.86666 0.90207 0.96941 0.91407 1.42279 1.06447 1.65989 1.20721 1.19197 0.94665 1.27614 0.95899 0.91143 1.24745 0.96629 1.01420 0.97790 1.69653 1.07708 1.51076 1.29350 0.86210 0.78267 0.79807 0.82001 1.21704 1.21735 1.20681 1.22004 1.00641 0.96335 0.97707 1.22482 1.02933 0.86819 0.91733 0.88366 0.87757 0.86994 0.89974 0.91101 0.91413 0.91854 0.91129 0.90242 0.91422 0.89330 0.90804 0.91076 0.89110 0.93394 0.90976 0.90581 0.91753 0.78107 0.93381 0.90721 0.89898 0.90904 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 13.70 29.02 0.40 -1.38 16 2 C -0.12 -1.25 7.99 -36.02 -0.29 -1.54 16 3 C -0.05 -0.56 0.72 -156.81 -0.11 -0.67 16 4 C -0.16 -1.46 6.87 37.16 0.26 -1.21 16 5 C -0.15 -1.31 8.07 37.16 0.30 -1.01 16 6 C 0.53 7.07 6.48 -10.98 -0.07 7.00 16 7 O -0.54 -9.16 15.47 5.56 0.09 -9.07 16 8 N -0.60 -7.45 2.96 -172.77 -0.51 -7.96 16 9 C 0.11 1.42 6.42 -3.71 -0.02 1.39 16 10 C -0.13 -1.64 5.26 -26.61 -0.14 -1.78 16 11 C -0.07 -1.00 2.11 -90.58 -0.19 -1.20 16 12 C 0.07 1.18 2.67 -25.68 -0.07 1.11 16 13 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 14 O -0.38 -5.92 10.09 -35.23 -0.36 -6.28 16 15 C 0.05 0.73 7.70 37.73 0.29 1.02 16 16 C -0.18 -3.07 6.76 -25.20 -0.17 -3.24 16 17 C 0.16 2.84 3.11 -65.92 -0.21 2.64 16 18 H 0.07 1.24 5.85 -51.92 -0.30 0.94 16 19 N -0.71 -16.45 5.20 -51.48 -0.27 -16.72 16 20 C -0.24 -6.28 9.97 -15.06 -0.15 -6.43 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 24 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C -0.13 -1.60 4.59 -26.61 -0.12 -1.73 16 29 C 0.08 0.89 3.95 -3.71 -0.01 0.87 16 30 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.10 0.85 5.65 -52.49 -0.30 0.55 16 32 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.08 0.75 3.88 -51.93 -0.20 0.55 16 34 H 0.07 0.50 7.97 -51.93 -0.41 0.09 16 35 H 0.07 0.63 6.58 -51.92 -0.34 0.29 16 36 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.07 0.49 8.02 -51.93 -0.42 0.07 16 38 H 0.08 0.64 4.71 -51.93 -0.24 0.40 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.20 7.04 -51.93 -0.37 0.84 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.38 9.56 7.74 -40.82 -0.32 9.24 16 49 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.07 0.96 6.87 -51.93 -0.36 0.60 16 51 H 0.08 1.08 6.10 -51.93 -0.32 0.76 16 52 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 53 H 0.11 0.95 2.84 -51.93 -0.15 0.80 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -30.24 394.16 -8.56 -38.80 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -8.74 Total: 11.46 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.41 Total: -6.48 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.05 Total: -50.72 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.27 Total: -15.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.24 -8.56 -38.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071077168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.291 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds