Wall clock time and date at job start Tue Mar 31 2020 20:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50704 * 120.00076 * 2 1 4 4 C 1.52999 * 109.47054 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.47063 * 239.99612 * 3 2 1 6 6 C 1.50704 * 109.47129 * 119.99670 * 3 2 1 7 7 O 1.21281 * 120.00116 * 1.81184 * 6 3 2 8 8 N 1.34779 * 119.99804 * 181.80481 * 6 3 2 9 9 C 1.46925 * 120.62833 * 175.02020 * 8 6 3 10 10 C 1.53191 * 108.77563 * 233.58678 * 9 8 6 11 11 C 1.53040 * 109.31420 * 305.36628 * 10 9 8 12 12 C 1.52996 * 109.46192 * 181.38074 * 11 10 9 13 13 H 1.09000 * 110.67157 * 57.03914 * 12 11 10 14 14 O 1.44375 * 110.62336 * 294.07178 * 12 11 10 15 15 C 1.43737 * 106.97802 * 201.43845 * 14 12 11 16 16 C 1.54099 * 107.29663 * 26.51031 * 15 14 12 17 17 C 1.54814 * 104.18449 * 357.97244 * 16 15 14 18 18 H 1.09008 * 110.90617 * 97.31629 * 17 16 15 19 19 N 1.46496 * 110.90860 * 220.88500 * 17 16 15 20 20 C 1.36944 * 120.00056 * 270.67080 * 19 17 16 21 21 H 1.08002 * 119.99661 * 359.97438 * 20 19 17 22 22 C 1.38814 * 120.00115 * 179.97438 * 20 19 17 23 23 N 1.31615 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99900 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47200 * 89.99947 * 24 22 20 26 26 H 1.48500 * 109.46841 * 210.00254 * 24 22 20 27 27 H 1.48503 * 109.46829 * 330.00030 * 24 22 20 28 28 C 1.53042 * 109.53634 * 61.36323 * 11 10 9 29 29 C 1.46926 * 120.63087 * 354.99756 * 8 6 3 30 30 H 1.07997 * 120.00238 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00078 * 359.97438 * 1 2 3 32 32 H 1.08007 * 120.00123 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46774 * 166.42389 * 4 3 2 34 34 H 1.08993 * 109.47145 * 286.43020 * 4 3 2 35 35 H 1.09007 * 109.46937 * 46.42658 * 4 3 2 36 36 H 1.09000 * 109.47812 * 307.84871 * 5 3 2 37 37 H 1.09003 * 109.46962 * 67.84796 * 5 3 2 38 38 H 1.09004 * 109.47270 * 187.84181 * 5 3 2 39 39 H 1.09003 * 109.58485 * 113.79974 * 9 8 6 40 40 H 1.08998 * 109.58866 * 353.37231 * 9 8 6 41 41 H 1.08994 * 109.50033 * 185.41147 * 10 9 8 42 42 H 1.08997 * 109.49590 * 65.31636 * 10 9 8 43 43 H 1.09003 * 109.45812 * 301.35809 * 11 10 9 44 44 H 1.09001 * 109.88005 * 267.08990 * 15 14 12 45 45 H 1.09000 * 109.87991 * 145.93777 * 15 14 12 46 46 H 1.09001 * 110.49231 * 239.29801 * 16 15 14 47 47 H 1.09000 * 110.60256 * 116.69922 * 16 15 14 48 48 H 0.97003 * 120.00426 * 90.66842 * 19 17 16 49 49 H 0.97003 * 120.00054 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.49897 * 58.58962 * 28 11 10 51 51 H 1.09003 * 109.49767 * 178.68476 * 28 11 10 52 52 H 1.08996 * 109.58663 * 246.19936 * 29 8 6 53 53 H 1.09001 * 109.58862 * 6.62594 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9298 1.3850 1.2305 7 8 2.9600 0.4581 2.0122 8 7 3.6712 2.4864 1.4623 9 6 4.4357 2.6254 2.7093 10 6 4.0586 3.9534 3.3734 11 6 4.2690 5.0954 2.3767 12 6 3.9262 6.4271 3.0474 13 1 4.5266 6.5712 3.9457 14 8 2.5184 6.4909 3.3612 15 6 2.1812 7.8816 3.4968 16 6 3.1803 8.6811 2.6382 17 6 4.1303 7.6042 2.0599 18 1 3.8299 7.3218 1.0508 19 7 5.5197 8.0682 2.0785 20 6 6.0260 8.7568 1.0085 21 1 5.4011 8.9573 0.1508 22 6 7.3424 9.1970 1.0264 23 7 8.1040 8.9522 2.0715 24 14 8.0328 10.1368 -0.4329 25 1 7.8048 11.5912 -0.2378 26 1 9.4901 9.8749 -0.5457 27 1 7.3522 9.6914 -1.6754 28 6 3.3616 4.8881 1.1618 29 6 3.7308 3.5707 0.4726 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.5924 3.3934 0.2406 34 1 0.6126 2.5551 -0.9865 35 1 0.2944 2.2840 0.7437 36 1 3.5544 0.4866 -1.3221 37 1 2.3114 1.4688 -2.1336 38 1 3.5902 2.2607 -1.1818 39 1 5.5027 2.6182 2.4866 40 1 4.1946 1.8003 3.3796 41 1 4.6879 4.1140 4.2488 42 1 3.0123 3.9239 3.6774 43 1 5.3101 5.1086 2.0540 44 1 2.2655 8.1833 4.5409 45 1 1.1656 8.0532 3.1402 46 1 3.7351 9.3870 3.2562 47 1 2.6624 9.2042 1.8343 48 1 6.0811 7.8879 2.8487 49 1 9.0240 9.2595 2.0838 50 1 2.3218 4.8499 1.4866 51 1 3.4948 5.7140 0.4630 52 1 4.7402 3.6406 0.0675 53 1 3.0246 3.3693 -0.3330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071077168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:45 Heat of formation + Delta-G solvation = -53.223893 kcal Electronic energy + Delta-G solvation = -31285.019287 eV Core-core repulsion = 27350.205119 eV Total energy + Delta-G solvation = -3934.814168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94418 -40.67415 -38.32807 -37.46567 -36.23571 -34.49013 -33.42542 -32.58868 -31.20276 -30.87229 -29.25625 -28.33287 -26.58029 -25.28031 -24.62592 -24.20452 -23.13867 -21.92223 -21.32908 -20.42392 -19.27932 -19.17568 -17.76909 -17.54909 -17.28241 -16.98124 -16.40259 -16.15206 -16.02922 -15.91535 -15.31097 -15.28121 -15.03903 -14.95934 -14.62536 -14.35981 -14.22401 -14.11041 -13.71100 -13.44786 -13.28809 -13.19960 -13.07513 -12.89617 -12.80968 -12.66056 -12.44230 -12.39103 -12.20180 -12.13709 -12.08473 -11.85862 -11.77397 -11.65061 -11.60076 -11.32094 -11.01346 -10.89433 -10.68852 -10.47255 -10.25465 -9.65817 -9.00129 -7.92599 -5.21422 1.31044 1.50400 1.50788 1.59037 1.59697 2.08006 2.56494 2.96988 3.40641 3.43693 3.62330 3.67888 3.75064 3.83319 3.96420 4.00945 4.08532 4.12987 4.17207 4.18675 4.28169 4.31883 4.43407 4.44786 4.46736 4.59702 4.62426 4.64120 4.72770 4.78134 4.80941 4.83338 4.86893 4.90326 4.94888 5.00320 5.03000 5.05644 5.08947 5.21394 5.23865 5.27107 5.33169 5.41301 5.52411 5.54340 5.57513 5.71408 5.84004 6.01540 6.28663 6.41048 7.13081 7.35343 8.08029 8.31650 9.30478 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.003108 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.246455 B = 9006.120840 C = 9696.389767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C -0.050 4.050 4 C -0.162 4.162 5 C -0.153 4.153 6 C 0.521 3.479 7 O -0.586 6.586 8 N -0.602 5.602 9 C 0.112 3.888 10 C -0.115 4.115 11 C -0.068 4.068 12 C 0.084 3.916 13 H 0.051 0.949 14 O -0.378 6.378 15 C 0.053 3.947 16 C -0.178 4.178 17 C 0.149 3.851 18 H 0.074 0.926 19 N -0.723 5.723 20 C -0.234 4.234 21 H 0.079 0.921 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.967 3.033 25 H -0.292 1.292 26 H -0.300 1.300 27 H -0.266 1.266 28 C -0.121 4.121 29 C 0.085 3.915 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.100 0.900 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.076 0.924 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.683 -12.562 -5.391 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.162 4.162 3 C -0.053 4.053 4 C -0.219 4.219 5 C -0.210 4.210 6 C 0.311 3.689 7 O -0.467 6.467 8 N -0.334 5.334 9 C -0.010 4.010 10 C -0.153 4.153 11 C -0.087 4.087 12 C 0.026 3.974 13 H 0.069 0.931 14 O -0.296 6.296 15 C -0.024 4.024 16 C -0.219 4.219 17 C 0.039 3.961 18 H 0.092 0.908 19 N -0.363 5.363 20 C -0.365 4.365 21 H 0.097 0.903 22 C -0.264 4.264 23 N -0.619 5.619 24 Si 0.796 3.204 25 H -0.219 1.219 26 H -0.227 1.227 27 H -0.190 1.190 28 C -0.159 4.159 29 C -0.036 4.036 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.205 0.795 49 H 0.058 0.942 50 H 0.094 0.906 51 H 0.099 0.901 52 H 0.094 0.906 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.791 -13.147 -5.137 21.180 hybrid contribution 1.368 0.892 0.231 1.649 sum -14.423 -12.255 -4.906 19.552 Atomic orbital electron populations 1.24192 0.95461 1.03342 0.99188 1.22519 0.96219 0.96327 1.01166 1.19863 0.95662 0.96540 0.93280 1.22399 0.98575 0.96456 1.04463 1.22249 0.99810 1.03419 0.95527 1.21097 0.79236 0.81078 0.87493 1.90635 1.67292 1.38542 1.50189 1.48133 1.46854 1.18707 1.19708 1.21568 0.95635 0.97910 0.85893 1.21806 1.02187 0.93199 0.98078 1.21019 0.99950 0.91983 0.95699 1.23165 0.82446 0.95632 0.96205 0.93064 1.88793 1.24224 1.24773 1.91849 1.23126 0.99359 0.80939 0.98948 1.23561 0.98330 0.99810 1.00151 1.22009 0.84575 0.91495 0.98006 0.90829 1.42398 1.08246 1.66021 1.19660 1.19563 0.94574 1.26030 0.96366 0.90345 1.25477 0.97347 1.03339 1.00227 1.69806 1.07614 1.53102 1.31371 0.85236 0.77004 0.78268 0.79845 1.21920 1.22682 1.19020 1.21928 1.00131 0.97088 0.96782 1.22595 1.03867 0.85429 0.91707 0.87323 0.86544 0.88181 0.90194 0.88651 0.91903 0.92495 0.88976 0.89903 0.90998 0.90367 0.90645 0.91778 0.90832 0.92690 0.88148 0.92720 0.90690 0.79550 0.94165 0.90558 0.90089 0.90625 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 13.70 67.79 0.93 -2.02 16 2 C -0.14 -2.82 7.99 25.66 0.21 -2.62 16 3 C -0.05 -0.95 0.72 -53.67 -0.04 -0.98 16 4 C -0.16 -2.42 6.87 71.98 0.49 -1.92 16 5 C -0.15 -2.23 8.07 71.98 0.58 -1.65 16 6 C 0.52 13.62 6.48 87.66 0.57 14.19 16 7 O -0.59 -19.98 15.47 -3.03 -0.05 -20.03 16 8 N -0.60 -14.37 2.96 -818.90 -2.42 -16.79 16 9 C 0.11 2.86 6.42 86.36 0.55 3.41 16 10 C -0.11 -2.95 5.26 30.67 0.16 -2.79 16 11 C -0.07 -1.88 2.11 -10.77 -0.02 -1.90 16 12 C 0.08 2.64 2.67 31.28 0.08 2.73 16 13 H 0.05 1.78 8.01 -2.39 -0.02 1.76 16 14 O -0.38 -11.11 10.09 -148.98 -1.50 -12.62 16 15 C 0.05 1.42 7.70 72.35 0.56 1.98 16 16 C -0.18 -5.72 6.76 31.59 0.21 -5.51 16 17 C 0.15 5.32 3.11 46.29 0.14 5.46 16 18 H 0.07 2.57 5.85 -2.38 -0.01 2.56 16 19 N -0.72 -33.50 5.20 -316.79 -1.65 -35.15 16 20 C -0.23 -11.99 9.97 84.03 0.84 -11.15 16 21 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 23 N -0.97 -56.83 13.06 21.65 0.28 -56.55 16 24 Si 0.97 43.94 29.55 68.60 2.03 45.97 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 C -0.12 -2.81 4.59 30.67 0.14 -2.66 16 29 C 0.09 1.69 3.95 86.36 0.34 2.03 16 30 H 0.11 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.12 1.55 5.65 -2.91 -0.02 1.54 16 32 H 0.10 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.08 1.23 3.88 -2.39 -0.01 1.22 16 34 H 0.09 0.97 7.97 -2.39 -0.02 0.95 16 35 H 0.06 1.01 6.58 -2.38 -0.02 1.00 16 36 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 37 H 0.09 0.96 8.02 -2.39 -0.02 0.94 16 38 H 0.08 1.13 4.71 -2.39 -0.01 1.12 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.17 7.04 -2.39 -0.02 2.16 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.76 7.94 -2.39 -0.02 1.74 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.05 2.00 8.06 -2.39 -0.02 1.98 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.37 18.95 7.74 -92.71 -0.72 18.23 16 49 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 50 H 0.08 1.77 6.87 -2.39 -0.02 1.75 16 51 H 0.08 1.93 6.10 -2.39 -0.01 1.92 16 52 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.13 1.97 2.84 -2.39 -0.01 1.96 16 Total: -1.00 -65.54 394.16 3.10 -62.44 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: 0.19 Total: 39.56 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 6.22 Total: -6.83 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -3.79 Total: -108.49 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.55 Total: -32.64 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.54 3.10 -62.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071077168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.216 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds