Wall clock time and date at job start Tue Mar 31 2020 19:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00196 * 2 1 4 4 C 1.53000 * 109.46940 * 247.90290 * 3 2 1 5 5 C 1.53008 * 109.46940 * 7.89967 * 3 2 1 6 6 C 1.52993 * 109.47077 * 176.16002 * 5 3 2 7 7 C 1.50699 * 109.47387 * 127.89964 * 3 2 1 8 8 O 1.21282 * 119.99886 * 126.60632 * 7 3 2 9 9 N 1.34769 * 120.00083 * 306.60351 * 7 3 2 10 10 C 1.46931 * 120.63137 * 174.84381 * 9 7 3 11 11 C 1.53180 * 108.77874 * 233.63441 * 10 9 7 12 12 C 1.53048 * 109.31416 * 305.36479 * 11 10 9 13 13 O 1.42895 * 109.46257 * 181.38700 * 12 11 10 14 14 C 1.42894 * 113.99969 * 149.97075 * 13 12 11 15 15 C 1.53503 * 114.20765 * 149.99977 * 14 13 12 16 16 N 1.47074 * 87.98651 * 87.52052 * 15 14 13 17 17 C 1.36930 * 136.05866 * 206.87083 * 16 15 14 18 18 H 1.08008 * 120.00034 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00249 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99637 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47225 * 89.99785 * 21 19 17 23 23 H 1.48500 * 109.46801 * 209.99662 * 21 19 17 24 24 H 1.48503 * 109.47265 * 329.99492 * 21 19 17 25 25 C 1.47067 * 87.88282 * 27.12201 * 16 15 14 26 26 C 1.53032 * 109.52529 * 61.36911 * 12 11 10 27 27 C 1.46925 * 120.63107 * 354.87241 * 9 7 3 28 28 H 1.08002 * 119.99653 * 5.53095 * 1 2 3 29 29 H 1.07998 * 119.99962 * 185.52754 * 1 2 3 30 30 H 1.08004 * 119.99963 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47257 * 305.12090 * 4 3 2 32 32 H 1.09006 * 109.46729 * 65.11646 * 4 3 2 33 33 H 1.08996 * 109.46976 * 185.11759 * 4 3 2 34 34 H 1.09004 * 109.47097 * 296.16683 * 5 3 2 35 35 H 1.08996 * 109.46863 * 56.16214 * 5 3 2 36 36 H 1.08996 * 109.47416 * 304.84244 * 6 5 3 37 37 H 1.09009 * 109.46809 * 64.83760 * 6 5 3 38 38 H 1.08999 * 109.47188 * 184.83817 * 6 5 3 39 39 H 1.08997 * 109.58465 * 113.84318 * 10 9 7 40 40 H 1.08999 * 109.58166 * 353.42211 * 10 9 7 41 41 H 1.09001 * 109.50149 * 185.41644 * 11 10 9 42 42 H 1.08996 * 109.52784 * 65.32853 * 11 10 9 43 43 H 1.09004 * 109.45705 * 301.35739 * 12 11 10 44 44 H 1.08994 * 113.28485 * 16.93660 * 14 13 12 45 45 H 1.09001 * 113.46541 * 332.74008 * 15 14 13 46 46 H 1.08996 * 113.52363 * 202.30939 * 15 14 13 47 47 H 0.97001 * 119.99859 * 179.97438 * 20 19 17 48 48 H 1.09001 * 113.46675 * 87.66114 * 25 16 15 49 49 H 1.09000 * 113.46718 * 218.10358 * 25 16 15 50 50 H 1.09001 * 109.49619 * 58.58365 * 26 12 11 51 51 H 1.09004 * 109.49939 * 178.67510 * 26 12 11 52 52 H 1.09010 * 109.58405 * 246.15014 * 27 9 7 53 53 H 1.08989 * 109.59125 * 6.43418 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.7885 1.4754 -1.3366 5 6 1.0812 2.4612 0.1983 6 6 1.8552 3.7774 0.2941 7 6 3.0706 1.3038 1.1211 8 8 4.2362 1.5461 0.8895 9 7 2.6760 1.0334 2.3811 10 6 3.6607 0.9172 3.4653 11 6 3.4580 -0.4256 4.1739 12 6 2.0022 -0.5416 4.6319 13 8 1.8173 -1.7792 5.3217 14 6 0.8078 -1.7362 6.3322 15 6 0.0923 -3.0742 6.5644 16 7 1.1521 -3.4149 7.5256 17 6 1.7184 -4.5672 8.0015 18 1 1.3716 -5.5262 7.6458 19 6 2.7382 -4.5028 8.9410 20 7 3.1612 -3.3341 9.3740 21 14 3.5103 -6.0748 9.5907 22 1 4.6617 -6.4523 8.7323 23 1 3.9807 -5.8568 10.9822 24 1 2.5021 -7.1650 9.5741 25 6 1.3315 -1.9734 7.7555 26 6 1.0774 -0.4937 3.4136 27 6 1.2529 0.8486 2.6964 28 1 -0.5400 0.9310 -0.0902 29 1 -0.5400 -0.9309 0.0901 30 1 1.8500 -0.9353 0.0004 31 1 3.4206 0.6067 -1.5203 32 1 2.0556 1.5676 -2.1382 33 1 3.4056 2.3732 -1.3033 34 1 0.3948 2.5040 -0.6475 35 1 0.5161 2.3043 1.1170 36 1 2.6012 3.7035 1.0853 37 1 2.3515 3.9771 -0.6557 38 1 1.1644 4.5895 0.5208 39 1 3.5187 1.7308 4.1766 40 1 4.6677 0.9633 3.0507 41 1 4.1174 -0.4834 5.0398 42 1 3.6887 -1.2390 3.4860 43 1 1.7650 0.2859 5.3006 44 1 0.1378 -0.8820 6.2357 45 1 0.0803 -3.7184 5.6852 46 1 -0.8911 -2.9679 7.0223 47 1 3.8736 -3.2890 10.0308 48 1 0.6783 -1.5728 8.5308 49 1 2.3732 -1.6815 7.8889 50 1 1.3307 -1.3061 2.7324 51 1 0.0422 -0.5999 3.7382 52 1 0.9145 1.6566 3.3452 53 1 0.6710 0.8518 1.7749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093567532.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:56 Heat of formation + Delta-G solvation = -10.582963 kcal Electronic energy + Delta-G solvation = -30903.333133 eV Core-core repulsion = 26970.368015 eV Total energy + Delta-G solvation = -3932.965119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02301 -40.40780 -38.80340 -37.89294 -36.67669 -34.15755 -32.95391 -32.63712 -31.99884 -30.42838 -29.54392 -26.77219 -26.33025 -25.43485 -25.03966 -24.11463 -23.51286 -22.00108 -21.19431 -20.79167 -19.37818 -18.81380 -17.88133 -17.46136 -17.08659 -16.94063 -16.76492 -16.07703 -15.83674 -15.60477 -15.53088 -15.40361 -15.15486 -15.05352 -14.58441 -14.42198 -14.05443 -13.90977 -13.52194 -13.44621 -13.30790 -13.27542 -13.04553 -12.94776 -12.83322 -12.76955 -12.63787 -12.48592 -12.36682 -12.25120 -12.22803 -11.84263 -11.63623 -11.56859 -11.48661 -11.44558 -11.16538 -10.92410 -10.91858 -10.19989 -9.89211 -9.72307 -8.89318 -7.89296 -5.21006 1.24886 1.42366 1.45664 1.53494 1.61157 1.97766 2.47219 2.68341 3.32837 3.43865 3.51514 3.66977 3.71197 3.76636 3.83569 3.90619 4.04016 4.09781 4.14826 4.26673 4.28277 4.39617 4.42645 4.44184 4.50094 4.55041 4.63556 4.69385 4.76561 4.79650 4.83106 4.85232 4.89502 4.90661 4.96576 5.00450 5.05484 5.11878 5.13440 5.19094 5.21743 5.25689 5.27686 5.36347 5.40908 5.50394 5.52529 5.70212 5.74727 5.96571 6.39187 6.61537 6.92397 7.12650 7.61830 8.63259 9.28385 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.002512 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.366355 B =11144.244670 C =11485.293928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.163 4.163 3 C -0.048 4.048 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.156 4.156 7 C 0.526 3.474 8 O -0.585 6.585 9 N -0.605 5.605 10 C 0.121 3.879 11 C -0.125 4.125 12 C 0.085 3.915 13 O -0.373 6.373 14 C 0.064 3.936 15 C 0.113 3.887 16 N -0.640 5.640 17 C -0.224 4.224 18 H 0.082 0.918 19 C -0.072 4.072 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.267 1.267 25 C 0.127 3.873 26 C -0.144 4.144 27 C 0.087 3.913 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.029 0.971 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.246 0.754 48 H 0.033 0.967 49 H 0.034 0.966 50 H 0.060 0.940 51 H 0.098 0.902 52 H 0.088 0.912 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.686 15.803 -21.713 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.051 4.051 4 C -0.180 4.180 5 C -0.157 4.157 6 C -0.213 4.213 7 C 0.316 3.684 8 O -0.465 6.465 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.163 4.163 12 C 0.027 3.973 13 O -0.292 6.292 14 C 0.006 3.994 15 C -0.012 4.012 16 N -0.366 5.366 17 C -0.352 4.352 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.603 5.603 21 Si 0.806 3.194 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.191 1.191 25 C 0.001 3.999 26 C -0.182 4.182 27 C -0.034 4.034 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.116 0.884 52 H 0.106 0.894 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.763 15.547 -21.680 28.408 hybrid contribution 1.179 -1.077 1.142 1.963 sum -8.584 14.470 -20.538 26.550 Atomic orbital electron populations 1.24269 0.94790 1.04347 0.96787 1.22594 0.96688 0.95895 1.02977 1.19978 0.95010 0.96411 0.93727 1.21641 1.00160 1.01886 0.94340 1.21994 0.97019 0.91882 1.04789 1.21840 1.00225 0.97750 1.01494 1.20986 0.88990 0.74585 0.83847 1.90656 1.21121 1.50938 1.83828 1.48188 1.08633 1.69432 1.07389 1.21473 0.93530 0.96267 0.88919 1.21878 0.96658 0.97603 1.00207 1.22269 0.94888 0.86693 0.93456 1.88018 1.57503 1.33602 1.50041 1.23615 0.89802 0.98166 0.87849 1.22883 0.92387 0.93736 0.92198 1.45777 1.39784 1.02211 1.48844 1.19295 1.12961 0.85044 1.17949 0.90065 1.25629 1.00239 1.00097 1.00471 1.70025 1.31369 1.24089 1.34783 0.85078 0.78388 0.78978 0.76912 1.21616 1.21864 1.19123 1.22653 0.98879 0.84343 0.93992 1.22362 1.01022 0.98096 0.96759 1.22620 0.80480 0.96851 1.03448 0.85290 0.86770 0.88438 0.93766 0.89513 0.92456 0.87780 0.89240 0.95149 0.92341 0.90527 0.89601 0.90326 0.91442 0.92873 0.90825 0.86907 0.93495 0.91197 0.94501 0.94958 0.94753 0.92098 0.88363 0.89363 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 12.05 67.78 0.82 -0.57 16 2 C -0.16 -2.25 7.05 25.65 0.18 -2.07 16 3 C -0.05 -0.76 0.51 -53.67 -0.03 -0.79 16 4 C -0.12 -2.03 7.47 71.98 0.54 -1.49 16 5 C -0.12 -1.20 3.46 30.59 0.11 -1.10 16 6 C -0.16 -1.99 9.32 71.98 0.67 -1.32 16 7 C 0.53 12.42 4.94 87.66 0.43 12.86 16 8 O -0.59 -18.67 15.31 -3.04 -0.05 -18.72 16 9 N -0.60 -12.84 2.96 -818.93 -2.42 -15.26 16 10 C 0.12 2.92 6.42 86.36 0.55 3.47 16 11 C -0.12 -3.56 5.73 30.67 0.18 -3.39 16 12 C 0.08 2.28 2.46 30.62 0.08 2.35 16 13 O -0.37 -14.08 10.04 -148.98 -1.50 -15.57 16 14 C 0.06 2.32 4.50 30.93 0.14 2.46 16 15 C 0.11 4.52 8.52 83.18 0.71 5.23 16 16 N -0.64 -34.24 3.78 -738.94 -2.79 -37.04 16 17 C -0.22 -13.23 10.75 84.04 0.90 -12.33 16 18 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 19 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.95 -60.04 11.51 21.65 0.25 -59.80 16 21 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.13 6.15 7.25 83.18 0.60 6.75 16 26 C -0.14 -2.80 5.69 30.67 0.17 -2.63 16 27 C 0.09 1.31 4.59 86.36 0.40 1.71 16 28 H 0.13 0.53 5.81 -2.91 -0.02 0.51 16 29 H 0.11 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.10 1.69 8.06 -2.91 -0.02 1.66 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.06 1.08 6.62 -2.39 -0.02 1.06 16 34 H 0.10 0.57 7.30 -2.39 -0.02 0.55 16 35 H 0.09 0.70 5.02 -2.39 -0.01 0.69 16 36 H 0.03 0.55 6.92 -2.39 -0.02 0.53 16 37 H 0.06 0.77 6.90 -2.38 -0.02 0.75 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 2.17 7.04 -2.39 -0.02 2.15 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.77 7.71 -2.38 -0.02 1.75 16 44 H 0.11 2.93 7.76 -2.39 -0.02 2.91 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 48 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.03 1.92 7.12 -2.39 -0.02 1.91 16 50 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 52 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 53 H 0.13 1.44 1.76 -2.39 0.00 1.44 16 Total: -1.00 -79.61 400.57 3.31 -76.30 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.88 Total: 14.97 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.91 Total: 5.33 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -4.97 Total: -112.10 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.54 Total: -34.29 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -79.61 3.31 -76.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093567532.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.715 kcal (2) G-P(sol) polarization free energy of solvation -79.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds