Wall clock time and date at job start Tue Mar 31 2020 21:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99971 * 2 1 4 4 C 1.50703 * 119.99759 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47210 * 95.00121 * 4 2 1 6 6 C 1.50695 * 109.47262 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99958 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00234 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00090 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.50056 * 324.92932 * 9 8 6 11 11 C 1.53192 * 109.50060 * 85.00073 * 9 8 6 12 12 N 1.46920 * 108.78783 * 174.64284 * 11 9 8 13 13 C 1.36939 * 120.63582 * 126.33442 * 12 11 9 14 14 H 1.07998 * 120.00165 * 209.20191 * 13 12 11 15 15 C 1.38821 * 119.99789 * 29.20300 * 13 12 11 16 16 N 1.31617 * 119.99652 * 24.23025 * 15 13 12 17 17 Si 1.86796 * 119.99851 * 204.23350 * 15 13 12 18 18 H 1.48502 * 109.46855 * 179.97438 * 17 15 13 19 19 H 1.48492 * 109.47452 * 300.00063 * 17 15 13 20 20 H 1.48508 * 109.47077 * 60.00293 * 17 15 13 21 21 C 1.46948 * 118.73272 * 306.60266 * 12 11 9 22 22 C 1.52655 * 109.02333 * 53.17021 * 21 12 11 23 23 C 1.53085 * 109.37029 * 65.88344 * 22 21 12 24 24 C 1.53109 * 109.15316 * 176.77431 * 23 22 21 25 25 O 1.42893 * 109.41064 * 302.51717 * 24 23 22 26 26 C 1.42908 * 114.13599 * 61.17225 * 25 24 23 27 27 C 1.53080 * 109.58424 * 185.56406 * 22 21 12 28 28 C 1.52947 * 109.56164 * 305.78766 * 22 21 12 29 29 H 1.07997 * 119.99644 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00125 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46804 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47393 * 299.99784 * 3 2 1 33 33 H 1.08996 * 109.47092 * 60.00499 * 3 2 1 34 34 H 1.08997 * 109.47423 * 334.99807 * 4 2 1 35 35 H 1.09010 * 109.47060 * 214.99947 * 4 2 1 36 36 H 1.09005 * 109.47152 * 60.00201 * 5 4 2 37 37 H 1.08998 * 109.47311 * 299.99910 * 5 4 2 38 38 H 0.96994 * 120.00029 * 0.02562 * 8 6 5 39 39 H 1.08995 * 109.58012 * 54.85562 * 11 9 8 40 40 H 1.08995 * 109.58369 * 294.43373 * 11 9 8 41 41 H 0.96998 * 120.00688 * 5.78443 * 16 15 13 42 42 H 1.09003 * 109.58361 * 173.00726 * 21 12 11 43 43 H 1.08990 * 109.58616 * 293.42203 * 21 12 11 44 44 H 1.08997 * 109.52589 * 296.68266 * 23 22 21 45 45 H 1.08999 * 109.52045 * 56.87510 * 23 22 21 46 46 H 1.09003 * 109.48169 * 182.53856 * 24 23 22 47 47 H 1.09002 * 109.48360 * 62.50446 * 24 23 22 48 48 H 1.08997 * 109.48349 * 178.83996 * 26 25 24 49 49 H 1.09001 * 109.47920 * 58.80105 * 26 25 24 50 50 H 1.09002 * 109.52138 * 303.24212 * 27 22 21 51 51 H 1.08992 * 109.52410 * 63.37273 * 27 22 21 52 52 H 1.08997 * 109.45879 * 301.02564 * 28 22 21 53 53 H 1.09005 * 109.45280 * 181.08164 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1813 -2.9881 -1.4383 7 8 3.4052 -3.5596 -0.3922 8 7 3.6061 -3.5206 -2.6013 9 6 4.3385 -4.7893 -2.6018 10 1 4.9666 -4.8472 -1.7128 11 6 3.3436 -5.9542 -2.6019 12 7 4.0893 -7.2134 -2.7323 13 6 3.9117 -8.2264 -1.8281 14 1 4.7209 -8.9098 -1.6170 15 6 2.6915 -8.3749 -1.1830 16 7 1.5938 -7.9026 -1.7346 17 14 2.6076 -9.2451 0.4677 18 1 1.2008 -9.2715 0.9424 19 1 3.1071 -10.6357 0.3203 20 1 3.4484 -8.5190 1.4533 21 6 5.0339 -7.3627 -3.8480 22 6 6.0032 -6.1834 -3.8406 23 6 6.8707 -6.2471 -2.5809 24 6 7.8945 -5.1092 -2.6180 25 8 8.6801 -5.2158 -3.8068 26 6 7.9263 -5.1136 -5.0165 27 6 6.9040 -6.2518 -5.0764 28 6 5.2151 -4.8726 -3.8537 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 3.1352 1.1059 0.0005 32 1 1.8003 1.8766 -0.8899 33 1 1.8003 1.8766 0.8900 34 1 1.4386 -2.0857 0.4334 35 1 2.9743 -1.1992 0.5890 36 1 3.0524 -0.9028 -1.8717 37 1 1.5167 -1.7893 -2.0272 38 1 3.4267 -3.0638 -3.4379 39 1 2.6567 -5.8478 -3.4414 40 1 2.7836 -5.9564 -1.6668 41 1 1.6231 -7.5260 -2.6280 42 1 5.5910 -8.2925 -3.7331 43 1 4.4867 -7.3764 -4.7905 44 1 6.2399 -6.1411 -1.6984 45 1 7.3911 -7.2042 -2.5451 46 1 8.5444 -5.1764 -1.7455 47 1 7.3740 -4.1515 -2.6107 48 1 8.5991 -5.1838 -5.8712 49 1 7.4061 -4.1560 -5.0409 50 1 7.4253 -7.2090 -5.0946 51 1 6.2968 -6.1506 -5.9759 52 1 4.5841 -4.8372 -4.7417 53 1 5.9089 -4.0320 -3.8678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099582814.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:11 Heat of formation + Delta-G solvation = -84.570661 kcal Electronic energy + Delta-G solvation = -31263.895298 eV Core-core repulsion = 27327.721832 eV Total energy + Delta-G solvation = -3936.173466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75159 -40.57736 -38.60494 -37.32773 -35.99755 -35.48387 -32.85186 -32.43776 -32.04270 -30.75450 -28.53746 -28.09760 -27.27973 -25.78370 -24.61644 -24.53788 -23.29119 -21.93373 -21.38101 -19.53155 -19.39397 -19.20204 -17.84106 -17.46551 -17.00816 -16.76824 -16.69738 -16.32865 -15.98278 -15.77315 -15.59213 -15.47471 -15.19043 -15.15463 -15.05566 -14.75457 -14.16030 -14.12746 -13.94202 -13.55284 -13.31763 -13.11732 -13.03014 -12.97638 -12.84644 -12.63251 -12.55246 -12.26490 -12.23075 -12.02432 -11.98348 -11.97714 -11.87447 -11.83881 -11.56021 -11.17834 -11.05741 -10.82401 -10.57130 -10.30658 -10.15630 -9.91083 -8.92359 -8.26749 -5.44704 1.29040 1.48566 1.58452 1.66954 1.74878 2.20647 2.59685 2.98016 3.19396 3.48047 3.60666 3.64901 3.81122 3.82707 3.95183 4.01968 4.08388 4.12135 4.18923 4.24548 4.29551 4.30226 4.34511 4.43096 4.49512 4.63935 4.67837 4.69078 4.70441 4.78692 4.81795 4.85221 4.88147 4.90667 4.96028 5.02631 5.07486 5.08970 5.14106 5.15602 5.18573 5.20079 5.21546 5.37946 5.46249 5.55594 5.73452 5.80834 5.99190 6.27758 6.35984 6.60149 7.02215 7.33639 7.73507 8.17239 8.96558 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007878 B = 0.004424 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3553.140848 B = 6328.194076 C = 8977.910991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.072 4.072 5 C -0.118 4.118 6 C 0.500 3.500 7 O -0.590 6.590 8 N -0.713 5.713 9 C 0.137 3.863 10 H 0.058 0.942 11 C 0.161 3.839 12 N -0.607 5.607 13 C -0.351 4.351 14 H 0.048 0.952 15 C -0.069 4.069 16 N -0.939 5.939 17 Si 1.103 2.897 18 H -0.291 1.291 19 H -0.268 1.268 20 H -0.290 1.290 21 C 0.157 3.843 22 C -0.063 4.063 23 C -0.132 4.132 24 C 0.070 3.930 25 O -0.397 6.397 26 C 0.059 3.941 27 C -0.135 4.135 28 C -0.098 4.098 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.415 0.585 39 H 0.005 0.995 40 H 0.029 0.971 41 H 0.254 0.746 42 H 0.044 0.956 43 H 0.021 0.979 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.055 0.945 48 H 0.114 0.886 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.091 0.909 52 H 0.079 0.921 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 18.307 -7.352 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.128 4.128 3 C -0.174 4.174 4 C -0.110 4.110 5 C -0.158 4.158 6 C 0.288 3.712 7 O -0.470 6.470 8 N -0.365 5.365 9 C 0.030 3.970 10 H 0.076 0.924 11 C 0.034 3.966 12 N -0.331 5.331 13 C -0.481 4.481 14 H 0.065 0.935 15 C -0.266 4.266 16 N -0.581 5.581 17 Si 0.928 3.072 18 H -0.217 1.217 19 H -0.193 1.193 20 H -0.217 1.217 21 C 0.032 3.968 22 C -0.065 4.065 23 C -0.170 4.170 24 C -0.007 4.007 25 O -0.316 6.316 26 C -0.017 4.017 27 C -0.173 4.173 28 C -0.136 4.136 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.252 0.748 39 H 0.023 0.977 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.073 0.927 48 H 0.132 0.868 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.109 0.891 52 H 0.097 0.903 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.266 17.410 -5.373 19.267 hybrid contribution 0.087 -0.259 -1.181 1.213 sum 6.353 17.151 -6.555 19.429 Atomic orbital electron populations 1.23821 0.95378 1.02322 1.02143 1.21806 0.95508 0.95468 0.99983 1.20880 0.99985 0.93508 1.03007 1.20390 1.00141 0.94753 0.95677 1.21609 1.01635 0.93267 0.99257 1.21556 0.78688 0.87801 0.83145 1.90734 1.58235 1.64458 1.33548 1.45955 1.57643 1.23311 1.09592 1.21359 0.93327 0.82942 0.99332 0.92358 1.20998 0.92818 0.85326 0.97494 1.44118 1.48525 1.11646 1.28762 1.20099 0.97299 1.10249 1.20443 0.93459 1.26979 0.91030 1.01216 1.07413 1.70887 1.28417 1.42609 1.16186 0.83022 0.75449 0.75875 0.72841 1.21696 1.19342 1.21717 1.21008 0.90411 0.96260 0.89169 1.20785 0.94804 0.95297 0.95660 1.22047 0.97341 0.99374 0.98265 1.22534 0.93369 0.96804 0.87998 1.87875 1.35174 1.94130 1.14453 1.22781 0.94447 0.97328 0.87123 1.22135 0.97556 1.00462 0.97163 1.21748 0.97873 0.97736 0.96253 0.86626 0.89501 0.91722 0.90012 0.90974 0.93486 0.91576 0.85458 0.87399 0.74829 0.97688 0.95189 0.93645 0.93745 0.96068 0.93090 0.92863 0.88770 0.92662 0.86817 0.91763 0.91531 0.89054 0.90268 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.72 13.93 67.78 0.94 -2.77 16 2 C -0.13 -2.44 5.31 -16.49 -0.09 -2.52 16 3 C -0.12 -1.60 10.05 71.24 0.72 -0.89 16 4 C -0.07 -1.79 4.58 29.85 0.14 -1.65 16 5 C -0.12 -2.60 5.68 29.85 0.17 -2.43 16 6 C 0.50 16.48 7.80 87.65 0.68 17.17 16 7 O -0.59 -26.66 15.65 -3.03 -0.05 -26.71 16 8 N -0.71 -20.97 5.08 -442.14 -2.25 -23.22 16 9 C 0.14 5.04 2.27 45.07 0.10 5.14 16 10 H 0.06 2.55 5.73 -2.38 -0.01 2.54 16 11 C 0.16 7.78 4.27 86.36 0.37 8.15 16 12 N -0.61 -30.65 2.36 -700.10 -1.65 -32.30 16 13 C -0.35 -20.37 9.48 84.04 0.80 -19.57 16 14 H 0.05 2.76 7.94 -2.91 -0.02 2.74 16 15 C -0.07 -4.15 4.69 84.86 0.40 -3.75 16 16 N -0.94 -59.74 12.45 21.65 0.27 -59.47 16 17 Si 1.10 54.86 29.98 68.60 2.06 56.92 16 18 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 21 C 0.16 6.34 5.15 86.18 0.44 6.79 16 22 C -0.06 -1.95 0.51 -52.26 -0.03 -1.98 16 23 C -0.13 -4.45 4.47 30.66 0.14 -4.31 16 24 C 0.07 1.89 6.57 72.02 0.47 2.36 16 25 O -0.40 -10.33 10.76 -148.98 -1.60 -11.94 16 26 C 0.06 1.18 6.57 72.02 0.47 1.65 16 27 C -0.13 -3.13 4.92 30.66 0.15 -2.98 16 28 C -0.10 -2.74 3.63 30.59 0.11 -2.62 16 29 H 0.12 1.67 8.05 -2.91 -0.02 1.65 16 30 H 0.09 1.81 7.99 -2.92 -0.02 1.79 16 31 H 0.06 0.86 8.00 -2.38 -0.02 0.84 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.44 7.94 -2.39 -0.02 1.42 16 35 H 0.07 1.76 8.10 -2.38 -0.02 1.74 16 36 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.41 8.44 8.60 -92.71 -0.80 7.64 16 39 H 0.01 0.26 7.86 -2.39 -0.02 0.24 16 40 H 0.03 1.77 6.39 -2.39 -0.02 1.75 16 41 H 0.25 16.27 6.71 -92.71 -0.62 15.65 16 42 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 2.11 5.93 -2.39 -0.01 2.09 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 46 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.06 1.41 6.64 -2.39 -0.02 1.40 16 48 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.06 1.10 6.58 -2.39 -0.02 1.09 16 50 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.09 1.98 5.03 -2.38 -0.01 1.97 16 Total: -1.00 -78.63 402.47 3.01 -75.63 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.24 Total: 25.31 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.99 Total: -4.22 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -3.63 Total: -114.99 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.65 Total: -38.65 kcal Atomic # 14 Polarization: 54.86 SS G_CDS: 2.06 Total: 56.92 kcal Total: -78.63 3.01 -75.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099582814.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.944 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds