Wall clock time and date at job start Tue Mar 31 2020 21:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00352 * 2 1 4 4 C 1.52997 * 109.47292 * 239.99958 * 3 2 1 5 5 C 1.52995 * 109.47046 * 0.02562 * 3 2 1 6 6 C 1.50701 * 109.46989 * 120.00104 * 3 2 1 7 7 O 1.21281 * 119.99995 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00105 * 180.02562 * 6 3 2 9 9 C 1.46497 * 120.00078 * 180.02562 * 8 6 3 10 10 H 1.08999 * 109.49823 * 324.99147 * 9 8 6 11 11 C 1.53187 * 109.50508 * 85.06662 * 9 8 6 12 12 N 1.46933 * 108.79588 * 174.59609 * 11 9 8 13 13 C 1.36940 * 120.60835 * 126.39270 * 12 11 9 14 14 H 1.07998 * 120.00065 * 331.89770 * 13 12 11 15 15 C 1.38816 * 119.99571 * 151.89527 * 13 12 11 16 16 N 1.31613 * 120.00104 * 343.09512 * 15 13 12 17 17 Si 1.86802 * 119.99515 * 163.10104 * 15 13 12 18 18 H 1.48497 * 109.47208 * 59.99799 * 17 15 13 19 19 H 1.48506 * 109.47104 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46938 * 299.99696 * 17 15 13 21 21 C 1.46941 * 118.75418 * 306.41268 * 12 11 9 22 22 C 1.53081 * 108.78094 * 53.45747 * 21 12 11 23 23 C 1.53083 * 109.50106 * 65.65363 * 22 21 12 24 24 C 1.53114 * 109.15288 * 176.78957 * 23 22 21 25 25 O 1.42894 * 109.40585 * 302.51305 * 24 23 22 26 26 C 1.42905 * 114.13839 * 61.17822 * 25 24 23 27 27 C 1.53083 * 109.52867 * 185.37958 * 22 21 12 28 28 C 1.52951 * 109.48835 * 305.52553 * 22 21 12 29 29 H 1.07992 * 119.99998 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99254 * 359.72464 * 1 2 3 31 31 H 1.08005 * 119.99828 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46994 * 59.99633 * 4 3 2 33 33 H 1.08992 * 109.47386 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47060 * 300.00487 * 4 3 2 35 35 H 1.09000 * 109.47062 * 59.99967 * 5 3 2 36 36 H 1.08994 * 109.47018 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46848 * 300.00127 * 5 3 2 38 38 H 0.96998 * 119.99609 * 359.97438 * 8 6 3 39 39 H 1.09002 * 109.58337 * 294.42428 * 11 9 8 40 40 H 1.09001 * 109.58471 * 54.83140 * 11 9 8 41 41 H 0.97004 * 119.99577 * 179.97438 * 16 15 13 42 42 H 1.09007 * 109.58841 * 293.66771 * 21 12 11 43 43 H 1.08997 * 109.70525 * 173.31532 * 21 12 11 44 44 H 1.08998 * 109.52658 * 296.69387 * 23 22 21 45 45 H 1.08997 * 109.52288 * 56.88993 * 23 22 21 46 46 H 1.09001 * 109.48083 * 182.53099 * 24 23 22 47 47 H 1.08998 * 109.49021 * 62.50138 * 24 23 22 48 48 H 1.09003 * 109.48046 * 178.84702 * 26 25 24 49 49 H 1.08990 * 109.48961 * 58.79971 * 26 25 24 50 50 H 1.08999 * 109.52021 * 303.12114 * 27 22 21 51 51 H 1.09002 * 109.52226 * 63.31500 * 27 22 21 52 52 H 1.09001 * 109.46337 * 301.18450 * 28 22 21 53 53 H 1.09002 * 109.44115 * 181.22375 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9433 1.3861 -1.2492 5 6 1.0695 2.4680 0.0006 6 6 2.9300 1.3848 1.2305 7 8 2.9347 0.4720 2.0290 8 7 3.6989 2.4709 1.4441 9 6 4.5416 2.5481 2.6399 10 1 4.0339 2.0648 3.4746 11 6 5.8741 1.8412 2.3732 12 7 6.7554 2.0392 3.5321 13 6 7.3321 0.9679 4.1606 14 1 6.8426 0.0053 4.1455 15 6 8.5459 1.1192 4.8169 16 7 9.3021 2.1673 4.5685 17 14 9.1058 -0.1649 6.0527 18 1 9.2245 -1.4824 5.3780 19 1 10.4258 0.2264 6.6094 20 1 8.1126 -0.2596 7.1525 21 6 7.0057 3.4080 4.0041 22 6 5.6615 4.0982 4.2497 23 6 4.9346 3.4048 5.4048 24 6 3.6292 4.1500 5.6964 25 8 3.9197 5.5161 5.9987 26 6 4.5560 6.2275 4.9351 27 6 5.8989 5.5662 4.6130 28 6 4.8068 4.0158 2.9840 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 0.0045 31 1 1.8500 -0.9354 0.0004 32 1 2.3166 1.3283 -2.1392 33 1 3.4886 2.3297 -1.2490 34 1 3.6515 0.5575 -1.2492 35 1 0.4432 2.4101 0.8909 36 1 1.6145 3.4119 0.0011 37 1 0.4425 2.4104 -0.8891 38 1 3.6948 3.2011 0.8056 39 1 5.6991 0.7756 2.2245 40 1 6.3406 2.2644 1.4835 41 1 10.1501 2.2732 5.0275 42 1 7.5663 3.9584 3.2485 43 1 7.5760 3.3781 4.9325 44 1 4.7119 2.3742 5.1288 45 1 5.5669 3.4167 6.2926 46 1 3.1290 3.6878 6.5474 47 1 2.9796 4.1012 4.8224 48 1 4.7232 7.2611 5.2380 49 1 3.9189 6.2060 4.0510 50 1 6.5520 5.6250 5.4836 51 1 6.3650 6.0789 3.7715 52 1 5.3342 4.4929 2.1579 53 1 3.8586 4.5263 3.1526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099587100.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:19 Heat of formation + Delta-G solvation = -48.970109 kcal Electronic energy + Delta-G solvation = -31941.157164 eV Core-core repulsion = 28006.527454 eV Total energy + Delta-G solvation = -3934.629710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.44344 -39.63524 -37.15433 -36.15459 -34.42443 -33.53034 -31.58531 -30.80189 -30.69236 -28.91488 -27.61009 -27.14318 -25.43540 -24.22761 -23.27574 -22.97891 -22.09076 -20.76985 -19.99153 -18.85368 -17.78568 -16.81376 -16.73414 -16.26150 -15.73933 -15.68175 -15.10928 -14.76725 -14.69198 -14.52202 -14.18586 -13.96199 -13.82503 -13.64813 -13.45923 -13.16011 -12.60847 -12.53530 -12.50274 -12.40876 -12.21468 -12.01291 -11.87744 -11.42973 -11.39321 -11.31305 -11.01821 -10.89529 -10.86388 -10.79554 -10.73981 -10.42531 -10.21130 -10.02245 -9.92520 -9.78616 -9.64544 -9.59731 -9.22750 -8.91921 -8.82534 -8.40115 -6.67820 -5.80010 -3.22375 2.16754 2.86005 3.40108 3.43472 3.45337 3.49439 4.17372 4.43975 4.50061 4.63964 4.80095 4.96171 5.00662 5.18052 5.25943 5.26991 5.32156 5.36610 5.42072 5.45486 5.47517 5.50886 5.53886 5.57360 5.62208 5.70195 5.76244 5.77218 5.84103 5.92946 5.95903 5.99624 6.01236 6.16034 6.17364 6.23235 6.37286 6.51127 6.52011 6.63981 6.65354 6.68404 6.74652 6.83618 6.93963 6.99412 7.28480 7.49655 7.61121 7.75611 7.81906 8.42017 8.49332 9.20470 9.82470 10.38071 11.28537 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.004392 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.529689 B = 6373.699604 C = 8132.164587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.058 4.058 4 C -0.136 4.136 5 C -0.142 4.142 6 C 0.522 3.478 7 O -0.532 6.532 8 N -0.721 5.721 9 C 0.124 3.876 10 H 0.089 0.911 11 C 0.142 3.858 12 N -0.583 5.583 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.006 3.994 16 N -0.903 5.903 17 Si 0.900 3.100 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.184 3.816 22 C -0.078 4.078 23 C -0.134 4.134 24 C 0.059 3.941 25 O -0.389 6.389 26 C 0.062 3.938 27 C -0.140 4.140 28 C -0.109 4.109 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.393 0.607 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.072 0.928 51 H 0.068 0.932 52 H 0.060 0.940 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.850 6.459 -9.222 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.136 4.136 3 C -0.061 4.061 4 C -0.194 4.194 5 C -0.199 4.199 6 C 0.307 3.693 7 O -0.407 6.407 8 N -0.372 5.372 9 C 0.019 3.981 10 H 0.107 0.893 11 C 0.015 3.985 12 N -0.305 5.305 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.547 5.547 17 Si 0.730 3.270 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.058 3.942 22 C -0.080 4.080 23 C -0.171 4.171 24 C -0.017 4.017 25 O -0.308 6.308 26 C -0.014 4.014 27 C -0.178 4.178 28 C -0.147 4.147 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.226 0.774 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.091 0.909 51 H 0.087 0.913 52 H 0.079 0.921 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.684 5.888 -8.378 17.902 hybrid contribution 0.528 -0.438 0.004 0.686 sum -14.156 5.451 -8.374 17.327 Atomic orbital electron populations 1.23915 0.95861 1.02034 1.01875 1.22534 0.95587 0.96823 0.98645 1.19927 0.95765 0.95727 0.94673 1.21802 0.99206 1.02836 0.95521 1.21933 0.98766 0.96431 1.02806 1.20306 0.79818 0.82276 0.86871 1.90725 1.65995 1.37399 1.46617 1.46132 1.44663 1.20460 1.25947 1.21798 0.92802 0.96682 0.86837 0.89268 1.21189 0.88657 0.98326 0.90373 1.43923 1.53284 1.02850 1.30465 1.19135 1.00270 0.90565 1.28064 0.91694 1.24993 0.95220 0.97785 1.01236 1.70012 1.11583 1.30152 1.42948 0.86399 0.77552 0.81268 0.81770 1.20885 1.21648 1.20924 1.20833 0.89709 0.83424 1.00256 1.21175 0.99323 0.94292 0.93210 1.22115 0.95890 1.00365 0.98768 1.22669 0.96901 0.81918 1.00229 1.87857 1.79483 1.23420 1.39994 1.22563 0.93277 0.95392 0.90217 1.22133 0.97473 0.96105 1.02128 1.21813 0.99283 0.95218 0.98432 0.88386 0.88059 0.86827 0.91456 0.91797 0.91666 0.91785 0.91922 0.91223 0.77390 0.92450 0.96592 0.93608 0.96320 0.89091 0.89775 0.91327 0.89696 0.93795 0.89731 0.93687 0.90890 0.91319 0.92127 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 13.70 29.01 0.40 -1.56 16 2 C -0.12 -1.35 8.00 -36.03 -0.29 -1.64 16 3 C -0.06 -0.63 0.84 -156.82 -0.13 -0.76 16 4 C -0.14 -1.24 8.35 37.16 0.31 -0.93 16 5 C -0.14 -1.20 7.02 37.16 0.26 -0.94 16 6 C 0.52 7.79 6.44 -10.99 -0.07 7.72 16 7 O -0.53 -10.44 15.70 5.56 0.09 -10.35 16 8 N -0.72 -9.92 4.87 -53.68 -0.26 -10.18 16 9 C 0.12 2.12 2.27 -67.80 -0.15 1.96 16 10 H 0.09 1.76 5.72 -51.93 -0.30 1.46 16 11 C 0.14 2.99 6.09 -3.71 -0.02 2.97 16 12 N -0.58 -14.12 2.50 -172.37 -0.43 -14.56 16 13 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 14 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 15 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 16 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 17 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.18 4.12 3.98 -3.76 -0.01 4.11 16 22 C -0.08 -1.36 0.51 -154.41 -0.08 -1.44 16 23 C -0.13 -2.41 4.48 -26.63 -0.12 -2.53 16 24 C 0.06 0.91 6.57 37.22 0.24 1.16 16 25 O -0.39 -6.16 10.76 -35.23 -0.38 -6.54 16 26 C 0.06 0.84 6.57 37.22 0.24 1.09 16 27 C -0.14 -2.14 4.92 -26.63 -0.13 -2.27 16 28 C -0.11 -1.68 3.63 -26.73 -0.10 -1.77 16 29 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.10 0.86 5.69 -52.49 -0.30 0.56 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.59 7.49 -51.93 -0.39 0.20 16 36 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 37 H 0.07 0.48 7.50 -51.93 -0.39 0.09 16 38 H 0.39 4.19 7.44 -40.82 -0.30 3.89 16 39 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 44 H 0.08 1.69 5.92 -51.93 -0.31 1.38 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.04 0.65 6.64 -51.93 -0.34 0.30 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.04 0.56 6.58 -51.93 -0.34 0.22 16 50 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 51 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 53 H 0.05 0.74 5.02 -51.93 -0.26 0.48 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -31.24 394.68 -8.39 -39.63 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -9.07 Total: 5.97 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 0.12 Total: -1.72 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.07 Total: -49.77 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.29 Total: -16.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.24 -8.39 -39.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099587100.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.338 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds