Wall clock time and date at job start Tue Mar 31 2020 21:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00352 * 2 1 4 4 C 1.52997 * 109.47292 * 239.99958 * 3 2 1 5 5 C 1.52995 * 109.47046 * 0.02562 * 3 2 1 6 6 C 1.50701 * 109.46989 * 120.00104 * 3 2 1 7 7 O 1.21281 * 119.99995 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00105 * 180.02562 * 6 3 2 9 9 C 1.46497 * 120.00078 * 180.02562 * 8 6 3 10 10 H 1.08999 * 109.49823 * 324.99147 * 9 8 6 11 11 C 1.53187 * 109.50508 * 85.06662 * 9 8 6 12 12 N 1.46933 * 108.79588 * 174.59609 * 11 9 8 13 13 C 1.36940 * 120.60835 * 126.39270 * 12 11 9 14 14 H 1.07998 * 120.00065 * 331.89770 * 13 12 11 15 15 C 1.38816 * 119.99571 * 151.89527 * 13 12 11 16 16 N 1.31613 * 120.00104 * 343.09512 * 15 13 12 17 17 Si 1.86802 * 119.99515 * 163.10104 * 15 13 12 18 18 H 1.48497 * 109.47208 * 59.99799 * 17 15 13 19 19 H 1.48506 * 109.47104 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46938 * 299.99696 * 17 15 13 21 21 C 1.46941 * 118.75418 * 306.41268 * 12 11 9 22 22 C 1.53081 * 108.78094 * 53.45747 * 21 12 11 23 23 C 1.53083 * 109.50106 * 65.65363 * 22 21 12 24 24 C 1.53114 * 109.15288 * 176.78957 * 23 22 21 25 25 O 1.42894 * 109.40585 * 302.51305 * 24 23 22 26 26 C 1.42905 * 114.13839 * 61.17822 * 25 24 23 27 27 C 1.53083 * 109.52867 * 185.37958 * 22 21 12 28 28 C 1.52951 * 109.48835 * 305.52553 * 22 21 12 29 29 H 1.07992 * 119.99998 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99254 * 359.72464 * 1 2 3 31 31 H 1.08005 * 119.99828 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46994 * 59.99633 * 4 3 2 33 33 H 1.08992 * 109.47386 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47060 * 300.00487 * 4 3 2 35 35 H 1.09000 * 109.47062 * 59.99967 * 5 3 2 36 36 H 1.08994 * 109.47018 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46848 * 300.00127 * 5 3 2 38 38 H 0.96998 * 119.99609 * 359.97438 * 8 6 3 39 39 H 1.09002 * 109.58337 * 294.42428 * 11 9 8 40 40 H 1.09001 * 109.58471 * 54.83140 * 11 9 8 41 41 H 0.97004 * 119.99577 * 179.97438 * 16 15 13 42 42 H 1.09007 * 109.58841 * 293.66771 * 21 12 11 43 43 H 1.08997 * 109.70525 * 173.31532 * 21 12 11 44 44 H 1.08998 * 109.52658 * 296.69387 * 23 22 21 45 45 H 1.08997 * 109.52288 * 56.88993 * 23 22 21 46 46 H 1.09001 * 109.48083 * 182.53099 * 24 23 22 47 47 H 1.08998 * 109.49021 * 62.50138 * 24 23 22 48 48 H 1.09003 * 109.48046 * 178.84702 * 26 25 24 49 49 H 1.08990 * 109.48961 * 58.79971 * 26 25 24 50 50 H 1.08999 * 109.52021 * 303.12114 * 27 22 21 51 51 H 1.09002 * 109.52226 * 63.31500 * 27 22 21 52 52 H 1.09001 * 109.46337 * 301.18450 * 28 22 21 53 53 H 1.09002 * 109.44115 * 181.22375 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9433 1.3861 -1.2492 5 6 1.0695 2.4680 0.0006 6 6 2.9300 1.3848 1.2305 7 8 2.9347 0.4720 2.0290 8 7 3.6989 2.4709 1.4441 9 6 4.5416 2.5481 2.6399 10 1 4.0339 2.0648 3.4746 11 6 5.8741 1.8412 2.3732 12 7 6.7554 2.0392 3.5321 13 6 7.3321 0.9679 4.1606 14 1 6.8426 0.0053 4.1455 15 6 8.5459 1.1192 4.8169 16 7 9.3021 2.1673 4.5685 17 14 9.1058 -0.1649 6.0527 18 1 9.2245 -1.4824 5.3780 19 1 10.4258 0.2264 6.6094 20 1 8.1126 -0.2596 7.1525 21 6 7.0057 3.4080 4.0041 22 6 5.6615 4.0982 4.2497 23 6 4.9346 3.4048 5.4048 24 6 3.6292 4.1500 5.6964 25 8 3.9197 5.5161 5.9987 26 6 4.5560 6.2275 4.9351 27 6 5.8989 5.5662 4.6130 28 6 4.8068 4.0158 2.9840 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 0.0045 31 1 1.8500 -0.9354 0.0004 32 1 2.3166 1.3283 -2.1392 33 1 3.4886 2.3297 -1.2490 34 1 3.6515 0.5575 -1.2492 35 1 0.4432 2.4101 0.8909 36 1 1.6145 3.4119 0.0011 37 1 0.4425 2.4104 -0.8891 38 1 3.6948 3.2011 0.8056 39 1 5.6991 0.7756 2.2245 40 1 6.3406 2.2644 1.4835 41 1 10.1501 2.2732 5.0275 42 1 7.5663 3.9584 3.2485 43 1 7.5760 3.3781 4.9325 44 1 4.7119 2.3742 5.1288 45 1 5.5669 3.4167 6.2926 46 1 3.1290 3.6878 6.5474 47 1 2.9796 4.1012 4.8224 48 1 4.7232 7.2611 5.2380 49 1 3.9189 6.2060 4.0510 50 1 6.5520 5.6250 5.4836 51 1 6.3650 6.0789 3.7715 52 1 5.3342 4.4929 2.1579 53 1 3.8586 4.5263 3.1526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099587100.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:18 Heat of formation + Delta-G solvation = -68.921302 kcal Electronic energy + Delta-G solvation = -31942.022313 eV Core-core repulsion = 28006.527454 eV Total energy + Delta-G solvation = -3935.494859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.75183 -40.85493 -38.51696 -37.23270 -35.96949 -35.12293 -33.20455 -32.06281 -31.91543 -30.29399 -28.68771 -28.26623 -27.31340 -25.22067 -24.56832 -24.51424 -23.45150 -22.17967 -21.43625 -19.96519 -19.07247 -18.62692 -17.85596 -17.60336 -16.98191 -16.88180 -16.51094 -16.24611 -16.03682 -15.75897 -15.43387 -15.33534 -15.17623 -15.09204 -14.95578 -14.47555 -14.24779 -13.91572 -13.38345 -13.28120 -13.20066 -13.09011 -13.05481 -12.99935 -12.76868 -12.69347 -12.65274 -12.37417 -12.18270 -12.12409 -12.10436 -11.92131 -11.84391 -11.66162 -11.59268 -11.14488 -11.00079 -10.73278 -10.60689 -10.26782 -10.25476 -10.08467 -8.67784 -7.91957 -5.36649 1.31925 1.40841 1.42768 1.49654 1.68658 2.26957 2.49221 3.02785 3.21842 3.57677 3.62437 3.71558 3.78560 3.92194 3.93903 4.04411 4.15178 4.16516 4.19414 4.25342 4.33888 4.39069 4.46954 4.51231 4.56243 4.72901 4.75169 4.76383 4.79451 4.85904 4.87300 4.88926 4.90366 4.96942 5.00049 5.09164 5.12057 5.14867 5.26479 5.27350 5.30488 5.31790 5.43414 5.53880 5.57941 5.63713 5.71609 5.74103 5.84237 6.32435 6.35165 6.63245 7.11717 7.33794 7.81302 8.31005 9.12900 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.004392 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.529689 B = 6373.699604 C = 8132.164587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C -0.048 4.048 4 C -0.135 4.135 5 C -0.140 4.140 6 C 0.517 3.483 7 O -0.587 6.587 8 N -0.706 5.706 9 C 0.141 3.859 10 H 0.063 0.937 11 C 0.146 3.854 12 N -0.599 5.599 13 C -0.263 4.263 14 H 0.049 0.951 15 C -0.037 4.037 16 N -0.925 5.925 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.282 1.282 21 C 0.194 3.806 22 C -0.072 4.072 23 C -0.129 4.129 24 C 0.070 3.930 25 O -0.400 6.400 26 C 0.063 3.937 27 C -0.136 4.136 28 C -0.098 4.098 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.413 0.587 39 H 0.025 0.975 40 H 0.020 0.980 41 H 0.251 0.749 42 H 0.002 0.998 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.040 0.960 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.111 0.889 49 H 0.069 0.931 50 H 0.053 0.947 51 H 0.086 0.914 52 H 0.078 0.922 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.498 9.036 -10.775 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.168 4.168 3 C -0.052 4.052 4 C -0.192 4.192 5 C -0.197 4.197 6 C 0.305 3.695 7 O -0.466 6.466 8 N -0.358 5.358 9 C 0.035 3.965 10 H 0.081 0.919 11 C 0.019 3.981 12 N -0.322 5.322 13 C -0.393 4.393 14 H 0.067 0.933 15 C -0.233 4.233 16 N -0.571 5.571 17 Si 0.784 3.216 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.208 1.208 21 C 0.069 3.931 22 C -0.074 4.074 23 C -0.167 4.167 24 C -0.007 4.007 25 O -0.319 6.319 26 C -0.013 4.013 27 C -0.174 4.174 28 C -0.136 4.136 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.251 0.749 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.111 0.889 47 H 0.079 0.921 48 H 0.129 0.871 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.105 0.895 52 H 0.097 0.903 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.356 8.504 -9.975 21.750 hybrid contribution 1.361 -1.327 0.449 1.954 sum -15.995 7.177 -9.527 19.952 Atomic orbital electron populations 1.24154 0.95194 1.03399 0.99050 1.22549 0.96420 0.96553 1.01292 1.19923 0.95761 0.96654 0.92819 1.21839 0.99066 1.02797 0.95519 1.21974 0.98362 0.95716 1.03626 1.21205 0.79586 0.81251 0.87496 1.90705 1.67729 1.39330 1.48837 1.45906 1.43546 1.21087 1.25263 1.21270 0.90523 0.97319 0.87389 0.91912 1.21205 0.90358 0.97101 0.89469 1.44081 1.53723 1.02889 1.31491 1.19251 1.00412 0.91045 1.28589 0.93307 1.25595 0.95333 0.99664 1.02742 1.70135 1.11696 1.31514 1.43746 0.85522 0.77045 0.79282 0.79724 1.20551 1.21276 1.20782 1.20628 0.92110 0.82815 0.97557 1.20998 0.96632 0.95392 0.94365 1.22007 0.97323 0.99570 0.97802 1.22566 0.95044 0.81714 1.01353 1.87861 1.79575 1.23133 1.41327 1.22758 0.91885 0.95971 0.90730 1.22112 0.98924 0.94361 1.02048 1.21738 1.00454 0.93852 0.97551 0.87638 0.86029 0.89100 0.89114 0.90247 0.93734 0.92475 0.90085 0.88849 0.74946 0.95608 0.96242 0.93957 0.98036 0.93002 0.92523 0.94115 0.88869 0.92104 0.87148 0.91239 0.92856 0.89533 0.90309 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 13.70 67.78 0.93 -2.25 16 2 C -0.15 -3.35 8.00 25.64 0.21 -3.14 16 3 C -0.05 -0.97 0.84 -53.68 -0.05 -1.01 16 4 C -0.13 -2.16 8.35 71.98 0.60 -1.56 16 5 C -0.14 -1.81 7.02 71.98 0.51 -1.30 16 6 C 0.52 15.19 6.44 87.66 0.56 15.76 16 7 O -0.59 -23.93 15.70 -3.03 -0.05 -23.98 16 8 N -0.71 -18.30 4.87 -442.15 -2.15 -20.45 16 9 C 0.14 4.79 2.27 45.07 0.10 4.90 16 10 H 0.06 2.54 5.72 -2.39 -0.01 2.52 16 11 C 0.15 6.37 6.09 86.36 0.53 6.89 16 12 N -0.60 -30.47 2.50 -699.25 -1.75 -32.22 16 13 C -0.26 -15.12 9.58 84.03 0.81 -14.32 16 14 H 0.05 2.90 7.88 -2.91 -0.02 2.88 16 15 C -0.04 -2.12 4.92 84.86 0.42 -1.70 16 16 N -0.93 -54.75 11.19 21.65 0.24 -54.51 16 17 Si 0.96 46.65 29.59 68.60 2.03 48.68 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 21 C 0.19 9.05 3.98 86.32 0.34 9.40 16 22 C -0.07 -2.48 0.51 -52.12 -0.03 -2.51 16 23 C -0.13 -4.75 4.48 30.66 0.14 -4.61 16 24 C 0.07 2.03 6.57 72.02 0.47 2.50 16 25 O -0.40 -11.54 10.76 -148.98 -1.60 -13.14 16 26 C 0.06 1.45 6.57 72.02 0.47 1.92 16 27 C -0.14 -3.90 4.92 30.66 0.15 -3.75 16 28 C -0.10 -2.77 3.63 30.60 0.11 -2.66 16 29 H 0.11 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.12 1.63 5.69 -2.91 -0.02 1.61 16 31 H 0.09 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.01 7.56 -2.39 -0.02 0.99 16 34 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.06 0.85 7.49 -2.39 -0.02 0.83 16 36 H 0.08 0.77 7.56 -2.39 -0.02 0.75 16 37 H 0.09 0.81 7.50 -2.39 -0.02 0.79 16 38 H 0.41 7.37 7.44 -92.71 -0.69 6.68 16 39 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 43 H 0.05 2.82 6.07 -2.39 -0.01 2.80 16 44 H 0.06 2.39 5.92 -2.39 -0.01 2.37 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.06 1.58 6.64 -2.39 -0.02 1.57 16 48 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.07 1.32 6.58 -2.39 -0.02 1.30 16 50 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.09 1.97 5.02 -2.39 -0.01 1.96 16 Total: -1.00 -74.04 394.68 3.20 -70.85 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.20 Total: 22.22 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.27 Total: 2.55 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.66 Total: -107.18 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.65 Total: -37.12 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.04 3.20 -70.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099587100.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.925 kcal (2) G-P(sol) polarization free energy of solvation -74.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds