Wall clock time and date at job start Tue Mar 31 2020 21:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00448 * 2 1 4 4 C 1.53001 * 109.46999 * 124.99946 * 3 2 1 5 5 C 1.53002 * 109.47088 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47035 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00449 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00183 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.52504 * 35.08171 * 9 8 6 11 11 C 1.53194 * 109.49728 * 275.00196 * 9 8 6 12 12 N 1.46920 * 108.79268 * 185.36593 * 11 9 8 13 13 C 1.36939 * 120.64494 * 233.69015 * 12 11 9 14 14 H 1.08000 * 120.00414 * 151.83366 * 13 12 11 15 15 C 1.38817 * 119.99793 * 331.83628 * 13 12 11 16 16 N 1.31620 * 119.99668 * 343.04986 * 15 13 12 17 17 Si 1.86798 * 120.00001 * 163.05549 * 15 13 12 18 18 H 1.48496 * 109.47244 * 59.99560 * 17 15 13 19 19 H 1.48497 * 109.47001 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46837 * 299.99918 * 17 15 13 21 21 C 1.46944 * 118.71429 * 53.66663 * 12 11 9 22 22 C 1.53097 * 108.78612 * 306.49812 * 21 12 11 23 23 C 1.53076 * 109.47768 * 294.29665 * 22 21 12 24 24 C 1.53117 * 109.16269 * 297.02124 * 23 22 21 25 25 O 1.42895 * 109.40319 * 302.51366 * 24 23 22 26 26 C 1.42907 * 114.13648 * 61.17696 * 25 24 23 27 27 C 1.53090 * 109.46943 * 174.62633 * 22 21 12 28 28 C 1.52926 * 109.49705 * 54.45859 * 22 21 12 29 29 H 1.08002 * 119.99863 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00296 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99863 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46758 * 5.00324 * 3 2 1 33 33 H 1.08995 * 109.47082 * 245.00414 * 3 2 1 34 34 H 1.09001 * 109.47056 * 60.00562 * 4 3 2 35 35 H 1.08997 * 109.47192 * 300.00523 * 4 3 2 36 36 H 1.09001 * 109.46798 * 60.00300 * 5 4 3 37 37 H 1.08995 * 109.46953 * 300.00444 * 5 4 3 38 38 H 0.96997 * 119.99629 * 0.02562 * 8 6 5 39 39 H 1.09006 * 109.58135 * 305.15690 * 11 9 8 40 40 H 1.08998 * 109.58430 * 65.56939 * 11 9 8 41 41 H 0.96995 * 119.99316 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.58294 * 66.29069 * 21 12 11 43 43 H 1.09004 * 109.58584 * 186.56537 * 21 12 11 44 44 H 1.09005 * 109.52284 * 56.92236 * 23 22 21 45 45 H 1.08996 * 109.52815 * 177.11275 * 23 22 21 46 46 H 1.09000 * 109.48362 * 182.53755 * 24 23 22 47 47 H 1.08995 * 109.48048 * 62.48962 * 24 23 22 48 48 H 1.09001 * 109.48946 * 178.83449 * 26 25 24 49 49 H 1.08998 * 109.48459 * 58.79048 * 26 25 24 50 50 H 1.08991 * 109.52037 * 182.88008 * 27 22 21 51 51 H 1.08994 * 109.52011 * 303.07615 * 27 22 21 52 52 H 1.09006 * 109.45484 * 178.80559 * 28 22 21 53 53 H 1.09006 * 109.45276 * 58.86876 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6582 1.1820 6 6 4.7571 2.6854 2.3455 7 8 4.8218 1.7380 3.0999 8 7 5.5422 3.7622 2.5473 9 6 6.4732 3.7884 3.6780 10 1 6.8664 2.7864 3.8494 11 6 5.7398 4.2716 4.9331 12 7 6.7131 4.4153 6.0242 13 6 6.5110 3.7919 7.2266 14 1 7.3559 3.5074 7.8362 15 6 5.2200 3.5254 7.6619 16 7 4.1986 4.1471 7.1117 17 14 4.9325 2.2848 9.0284 18 1 5.6409 2.7276 10.2561 19 1 3.4774 2.1831 9.3065 20 1 5.4509 0.9578 8.6093 21 6 7.9080 5.2407 5.8001 22 6 8.6157 4.7502 4.5343 23 6 9.1481 3.3334 4.7636 24 6 10.1930 3.3641 5.8824 25 8 11.2393 4.2713 5.5300 26 6 10.8066 5.6215 5.3512 27 6 9.7867 5.6818 4.2108 28 6 7.6277 4.7438 3.3671 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5064 1.0920 35 1 2.4773 1.2354 2.1130 36 1 3.0946 3.4845 1.2719 37 1 4.3574 2.7561 0.2507 38 1 5.4906 4.5198 1.9437 39 1 5.2696 5.2346 4.7336 40 1 4.9796 3.5431 5.2152 41 1 3.2966 3.9606 7.4156 42 1 7.6139 6.2827 5.6739 43 1 8.5792 5.1515 6.6544 44 1 8.3263 2.6774 5.0508 45 1 9.6071 2.9638 3.8467 46 1 10.6084 2.3657 6.0195 47 1 9.7235 3.6932 6.8094 48 1 11.6637 6.2486 5.1059 49 1 10.3449 5.9801 6.2712 50 1 10.2596 5.3633 3.2819 51 1 9.4207 6.7028 4.1030 52 1 8.1376 4.4147 2.4616 53 1 7.2361 5.7501 3.2175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099589421.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:22 Heat of formation + Delta-G solvation = -61.724176 kcal Electronic energy + Delta-G solvation = -30932.375548 eV Core-core repulsion = 26997.192780 eV Total energy + Delta-G solvation = -3935.182768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.15383 -39.16649 -36.97830 -35.97301 -34.10707 -33.75000 -32.40169 -31.02787 -30.58695 -29.75477 -27.26193 -26.62903 -25.41121 -23.46904 -23.17782 -22.18469 -21.70976 -20.24993 -19.99266 -19.72851 -17.90219 -16.81938 -16.60257 -15.94114 -15.82627 -15.63272 -15.25409 -15.12457 -14.71565 -14.52497 -14.10598 -14.01914 -13.82016 -13.61861 -13.45358 -13.20705 -12.89546 -12.41096 -12.36473 -12.22522 -12.03626 -11.81104 -11.72720 -11.53214 -11.19475 -11.08720 -10.98501 -10.91302 -10.74422 -10.70883 -10.67688 -10.43838 -10.25830 -10.14356 -10.03929 -9.72117 -9.49158 -9.37767 -9.35057 -8.93910 -8.50931 -8.42853 -6.67488 -5.78132 -3.22009 2.15510 3.10146 3.41024 3.47575 3.49622 3.59090 4.19737 4.50919 4.68402 4.86698 4.96259 4.98697 5.11182 5.15958 5.17115 5.22468 5.37546 5.42406 5.43718 5.50030 5.54376 5.60993 5.63188 5.69493 5.69868 5.70170 5.80956 5.84397 5.88314 5.95109 6.04218 6.11748 6.14815 6.18036 6.23067 6.30012 6.35919 6.46087 6.50530 6.53026 6.64641 6.68367 6.73970 6.79259 6.86532 6.98589 7.27816 7.52896 7.70458 7.80619 7.97724 8.44998 8.71903 9.20110 9.83880 10.38696 11.29690 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009809 B = 0.003586 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.707524 B = 7806.011245 C = 9824.672105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.095 4.095 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.507 3.493 7 O -0.534 6.534 8 N -0.724 5.724 9 C 0.115 3.885 10 H 0.084 0.916 11 C 0.167 3.833 12 N -0.582 5.582 13 C -0.258 4.258 14 H 0.065 0.935 15 C 0.010 3.990 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.151 3.849 22 C -0.072 4.072 23 C -0.136 4.136 24 C 0.060 3.940 25 O -0.391 6.391 26 C 0.061 3.939 27 C -0.140 4.140 28 C -0.103 4.103 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.391 0.609 39 H 0.015 0.985 40 H 0.094 0.906 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.051 0.949 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 0.834 -14.645 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.132 4.132 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.293 3.707 7 O -0.410 6.410 8 N -0.375 5.375 9 C 0.010 3.990 10 H 0.102 0.898 11 C 0.040 3.960 12 N -0.304 5.304 13 C -0.387 4.387 14 H 0.082 0.918 15 C -0.189 4.189 16 N -0.541 5.541 17 Si 0.730 3.270 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.025 3.975 22 C -0.075 4.075 23 C -0.173 4.173 24 C -0.016 4.016 25 O -0.310 6.310 26 C -0.015 4.015 27 C -0.178 4.178 28 C -0.141 4.141 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.033 0.967 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.087 0.913 52 H 0.070 0.930 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.764 0.070 -14.025 14.295 hybrid contribution -0.669 -0.063 0.331 0.749 sum 2.095 0.007 -13.693 13.853 Atomic orbital electron populations 1.23831 0.96000 1.01718 1.02139 1.22982 0.96032 0.98682 0.99001 1.20810 0.98253 0.95378 0.98797 1.21274 0.97651 0.96377 0.98509 1.21678 0.98362 1.00445 0.97488 1.20581 0.81204 0.82645 0.86304 1.90738 1.67530 1.35579 1.47148 1.46100 1.41451 1.19096 1.30815 1.21987 0.89232 1.00450 0.87375 0.89751 1.21092 0.91891 0.99159 0.83813 1.43883 1.21274 1.54569 1.10699 1.19037 0.91456 1.31955 0.96260 0.91756 1.25013 0.96296 0.99392 0.98229 1.70000 0.98451 1.41357 1.44289 0.86411 0.76879 0.82001 0.81743 1.20901 1.21643 1.20825 1.21070 0.89609 0.93078 0.93752 1.20992 0.93889 0.95242 0.97333 1.22124 0.99260 0.97477 0.98485 1.22636 0.88452 0.93023 0.97465 1.87837 1.34480 1.18153 1.90546 1.22536 0.97517 0.83874 0.97621 1.22169 0.96488 1.00091 0.99084 1.21675 0.95901 0.99313 0.97249 0.88653 0.88704 0.87423 0.91492 0.91092 0.91153 0.90875 0.89152 0.89449 0.77615 0.96656 0.88741 0.93592 0.96436 0.92423 0.89164 0.92679 0.89636 0.92177 0.89714 0.92873 0.91752 0.91259 0.92989 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.84 14.32 29.02 0.42 -1.42 16 2 C -0.15 -1.46 9.52 -36.02 -0.34 -1.80 16 3 C -0.10 -0.90 5.66 -27.88 -0.16 -1.06 16 4 C -0.10 -1.21 4.49 -26.73 -0.12 -1.33 16 5 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 6 C 0.51 8.47 7.80 -10.99 -0.09 8.38 16 7 O -0.53 -11.62 15.65 5.56 0.09 -11.53 16 8 N -0.72 -11.30 5.08 -53.69 -0.27 -11.57 16 9 C 0.11 2.15 2.27 -67.81 -0.15 2.00 16 10 H 0.08 1.81 5.87 -51.93 -0.30 1.51 16 11 C 0.17 3.94 4.88 -3.71 -0.02 3.92 16 12 N -0.58 -14.00 2.40 -172.36 -0.41 -14.41 16 13 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 14 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 15 C 0.01 0.28 4.92 -17.43 -0.09 0.20 16 16 N -0.90 -26.26 11.20 55.49 0.62 -25.64 16 17 Si 0.90 22.23 29.59 -169.99 -5.03 17.20 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.15 2.99 4.60 -3.75 -0.02 2.98 16 22 C -0.07 -1.17 0.52 -154.41 -0.08 -1.25 16 23 C -0.14 -2.29 4.37 -26.63 -0.12 -2.40 16 24 C 0.06 0.98 6.57 37.22 0.24 1.22 16 25 O -0.39 -6.18 10.76 -35.23 -0.38 -6.56 16 26 C 0.06 0.83 6.57 37.22 0.24 1.08 16 27 C -0.14 -1.89 4.92 -26.62 -0.13 -2.02 16 28 C -0.10 -1.61 4.19 -26.74 -0.11 -1.72 16 29 H 0.10 0.82 7.84 -52.49 -0.41 0.40 16 30 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.39 4.69 8.60 -40.82 -0.35 4.34 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 2.66 6.06 -51.93 -0.31 2.34 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.14 4.85 -51.93 -0.25 0.89 16 44 H 0.09 1.79 6.11 -51.93 -0.32 1.47 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 48 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.05 0.74 6.74 -51.93 -0.35 0.39 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 53 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -32.05 403.40 -9.48 -41.52 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -9.35 Total: 7.00 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.82 Total: -2.09 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.06 Total: -51.62 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.29 Total: -18.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.05 -9.48 -41.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099589421.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.202 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds