Wall clock time and date at job start Tue Mar 31 2020 21:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00059 * 2 1 4 4 C 1.50701 * 120.00196 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47106 * 94.99674 * 4 2 1 6 6 C 1.50701 * 109.47106 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98974 * 0.02562 * 8 6 5 10 10 C 1.53292 * 108.38071 * 230.60338 * 9 8 6 11 11 O 1.42969 * 109.23581 * 307.66979 * 10 9 8 12 12 C 1.42892 * 114.19470 * 62.49154 * 11 10 9 13 13 C 1.52960 * 109.57672 * 177.70809 * 12 11 10 14 14 C 1.52997 * 109.51340 * 299.56226 * 13 12 11 15 15 C 1.53000 * 109.47060 * 300.07539 * 14 13 12 16 16 N 1.46507 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99574 * 155.00276 * 16 15 14 18 18 H 1.07995 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99339 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00380 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47531 * 89.99912 * 21 19 17 23 23 H 1.48497 * 109.47172 * 210.00245 * 21 19 17 24 24 H 1.48505 * 109.47190 * 329.99945 * 21 19 17 25 25 C 1.53004 * 109.45117 * 60.05665 * 15 14 13 26 26 C 1.52946 * 109.58143 * 57.46052 * 12 11 10 27 27 C 1.47158 * 120.98550 * 180.02562 * 8 6 5 28 28 H 1.07998 * 120.00148 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00187 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47070 * 270.00083 * 3 2 1 31 31 H 1.09004 * 109.47085 * 29.99346 * 3 2 1 32 32 H 1.09001 * 109.47416 * 150.00125 * 3 2 1 33 33 H 1.09003 * 109.46380 * 334.99808 * 4 2 1 34 34 H 1.08990 * 109.46923 * 215.00175 * 4 2 1 35 35 H 1.09000 * 109.46724 * 60.00480 * 5 4 2 36 36 H 1.08994 * 109.47333 * 300.00476 * 5 4 2 37 37 H 1.09001 * 109.67603 * 110.88138 * 9 8 6 38 38 H 1.08993 * 109.71282 * 350.34569 * 9 8 6 39 39 H 1.08995 * 109.50854 * 187.74250 * 10 9 8 40 40 H 1.09003 * 109.55201 * 67.62415 * 10 9 8 41 41 H 1.09000 * 109.46397 * 179.54940 * 13 12 11 42 42 H 1.09000 * 109.46093 * 59.57623 * 13 12 11 43 43 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.46832 * 60.07410 * 14 13 12 45 45 H 1.08995 * 109.47704 * 300.06073 * 15 14 13 46 46 H 0.96996 * 120.00207 * 334.99250 * 16 15 14 47 47 H 0.97002 * 119.99331 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.46878 * 59.93585 * 25 15 14 49 49 H 1.08989 * 109.47330 * 179.97438 * 25 15 14 50 50 H 1.09010 * 109.46276 * 300.41250 * 26 12 11 51 51 H 1.09003 * 109.46732 * 180.44203 * 26 12 11 52 52 H 1.09001 * 109.68114 * 9.76268 * 27 8 6 53 53 H 1.09000 * 109.67889 * 249.20775 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4273 -1.6846 -1.4362 6 6 3.1814 -2.9893 -1.4356 7 8 3.4054 -3.5598 -0.3890 8 7 3.6070 -3.5223 -2.5981 9 6 3.3477 -2.8484 -3.8803 10 6 2.7306 -3.8669 -4.8455 11 8 3.5602 -5.0302 -4.8966 12 6 3.6804 -5.7189 -3.6504 13 6 4.5393 -6.9707 -3.8374 14 6 3.8760 -7.8977 -4.8580 15 6 2.4884 -8.3005 -4.3550 16 7 1.8535 -9.1887 -5.3320 17 6 0.8868 -10.0707 -4.9286 18 1 0.5927 -10.1119 -3.8903 19 6 0.2849 -10.9118 -5.8545 20 7 -0.6439 -11.7600 -5.4667 21 14 0.7932 -10.8401 -7.6505 22 1 1.9112 -11.7883 -7.8869 23 1 -0.3614 -11.2126 -8.5069 24 1 1.2337 -9.4620 -7.9856 25 6 1.6295 -7.0477 -4.1715 26 6 2.2918 -6.1204 -3.1506 27 6 4.3447 -4.7954 -2.6227 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.2451 1.6197 -1.0277 31 1 1.4743 2.0648 0.5137 32 1 3.0159 1.1748 0.5138 33 1 1.4385 -2.0852 0.4353 34 1 2.9741 -1.1985 0.5900 35 1 3.0523 -0.9044 -1.8708 36 1 1.5167 -1.7910 -2.0256 37 1 4.2838 -2.4720 -4.2929 38 1 2.6550 -2.0210 -3.7274 39 1 2.6577 -3.4278 -5.8404 40 1 1.7359 -4.1442 -4.4963 41 1 4.6364 -7.4903 -2.8841 42 1 5.5274 -6.6829 -4.1964 43 1 4.4884 -8.7897 -4.9904 44 1 3.7803 -7.3787 -5.8117 45 1 2.5840 -8.8185 -3.4007 46 1 2.1179 -9.1518 -6.2645 47 1 -1.0648 -12.3475 -6.1137 48 1 1.5349 -6.5291 -5.1256 49 1 0.6407 -7.3342 -3.8136 50 1 1.6803 -5.2274 -3.0205 51 1 2.3851 -6.6387 -2.1962 52 1 4.3105 -5.2586 -1.6366 53 1 5.3809 -4.6137 -2.9079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105472706.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:04 Heat of formation + Delta-G solvation = -81.242862 kcal Electronic energy + Delta-G solvation = -30535.010110 eV Core-core repulsion = 26598.980948 eV Total energy + Delta-G solvation = -3936.029162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93441 -40.28574 -38.20625 -37.31387 -35.93792 -35.38093 -33.59088 -32.39206 -31.91791 -31.24583 -29.36041 -28.11424 -27.36798 -25.34980 -24.70026 -24.29924 -23.37385 -21.79660 -20.72868 -19.92118 -19.57953 -19.39316 -18.13388 -17.29400 -17.26898 -16.90204 -16.65054 -16.32864 -16.03359 -15.82670 -15.68587 -15.21747 -14.87657 -14.75699 -14.70452 -14.53101 -14.35054 -14.15339 -13.99689 -13.54297 -13.40152 -13.27079 -13.23340 -13.11839 -12.86148 -12.71922 -12.56866 -12.51214 -12.33458 -12.04468 -11.99201 -11.91467 -11.84518 -11.83602 -11.72485 -11.43518 -11.28133 -10.98609 -10.79378 -10.71129 -9.92434 -9.51927 -9.30273 -8.02519 -5.35460 1.28946 1.37287 1.40932 1.48410 1.56091 1.90051 2.48473 2.75945 3.27769 3.39798 3.48873 3.70061 3.74706 3.77913 3.94637 3.96238 4.00648 4.15779 4.16456 4.23808 4.28234 4.32169 4.33885 4.49848 4.52008 4.55272 4.57418 4.63975 4.69280 4.72237 4.74924 4.82491 4.87840 4.92505 4.95783 4.98351 5.00302 5.08975 5.10047 5.13677 5.18516 5.23205 5.24929 5.36633 5.51456 5.57233 5.75090 5.76861 5.98353 6.22099 6.27424 6.32004 7.08134 7.09402 7.85191 8.05314 9.19340 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.002499 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.310629 B =11202.024521 C =11764.265617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.069 4.069 5 C -0.124 4.124 6 C 0.509 3.491 7 O -0.585 6.585 8 N -0.614 5.614 9 C 0.075 3.925 10 C 0.033 3.967 11 O -0.373 6.373 12 C 0.118 3.882 13 C -0.094 4.094 14 C -0.111 4.111 15 C 0.175 3.825 16 N -0.751 5.751 17 C -0.227 4.227 18 H 0.051 0.949 19 C -0.069 4.069 20 N -0.986 5.986 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.252 1.252 25 C -0.115 4.115 26 C -0.127 4.127 27 C 0.093 3.907 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.365 0.635 47 H 0.257 0.743 48 H 0.058 0.942 49 H 0.028 0.972 50 H 0.062 0.938 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.668 30.636 4.373 33.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.130 4.130 3 C -0.176 4.176 4 C -0.107 4.107 5 C -0.163 4.163 6 C 0.300 3.700 7 O -0.465 6.465 8 N -0.347 5.347 9 C -0.047 4.047 10 C -0.044 4.044 11 O -0.291 6.291 12 C 0.078 3.922 13 C -0.132 4.132 14 C -0.149 4.149 15 C 0.068 3.932 16 N -0.394 5.394 17 C -0.358 4.358 18 H 0.069 0.931 19 C -0.260 4.260 20 N -0.637 5.637 21 Si 0.786 3.214 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.177 1.177 25 C -0.155 4.155 26 C -0.165 4.165 27 C -0.030 4.030 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.198 0.802 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.078 0.922 52 H 0.102 0.898 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.750 30.171 4.901 32.747 hybrid contribution -0.711 -0.827 -0.540 1.217 sum 11.038 29.344 4.360 31.653 Atomic orbital electron populations 1.23851 0.95383 1.02325 1.01993 1.21802 0.95462 0.95647 1.00083 1.20905 1.00051 0.93589 1.03064 1.20372 1.00186 0.94581 0.95573 1.21676 1.01654 0.93671 0.99333 1.21361 0.78527 0.87683 0.82474 1.90692 1.58931 1.64248 1.32614 1.48266 1.56083 1.23084 1.07282 1.22689 1.03541 0.96124 0.82358 1.23202 0.93591 0.85713 1.01856 1.87993 1.69398 1.40653 1.31103 1.21684 0.94246 0.91960 0.84305 1.21448 0.98763 0.92765 1.00227 1.21612 0.94627 0.99137 0.99567 1.20432 0.91902 0.89080 0.91820 1.42803 1.45782 1.43762 1.07065 1.19009 1.11649 1.10925 0.94235 0.93106 1.25543 0.99082 0.98564 1.02767 1.69903 1.31165 1.27344 1.35292 0.85351 0.77156 0.78829 0.80087 1.20310 1.22321 1.17672 1.21886 0.98252 0.96751 0.98636 1.21947 0.96863 0.99039 0.98644 1.22226 0.96071 0.84323 1.00363 0.89096 0.87203 0.90084 0.91303 0.91774 0.92711 0.91480 0.85955 0.87276 0.88584 0.86040 0.85431 0.93377 0.89844 0.88755 0.91591 0.91415 0.94740 0.80178 0.93415 0.92375 0.95277 0.91935 0.92187 0.89837 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 13.89 67.78 0.94 -1.57 16 2 C -0.13 -1.63 5.31 -16.48 -0.09 -1.72 16 3 C -0.12 -1.03 10.03 71.24 0.71 -0.31 16 4 C -0.07 -1.10 4.67 29.85 0.14 -0.96 16 5 C -0.12 -1.58 4.06 29.85 0.12 -1.46 16 6 C 0.51 10.52 7.71 87.66 0.68 11.20 16 7 O -0.58 -17.42 15.45 -3.04 -0.05 -17.47 16 8 N -0.61 -10.99 2.54 -817.32 -2.08 -13.07 16 9 C 0.07 0.82 6.54 86.35 0.56 1.39 16 10 C 0.03 0.52 6.60 72.08 0.48 1.00 16 11 O -0.37 -8.27 8.93 -148.98 -1.33 -9.61 16 12 C 0.12 2.73 0.68 -10.72 -0.01 2.73 16 13 C -0.09 -2.18 4.94 30.58 0.15 -2.02 16 14 C -0.11 -3.34 5.25 30.59 0.16 -3.18 16 15 C 0.18 6.83 2.77 44.99 0.12 6.95 16 16 N -0.75 -36.07 4.92 -322.92 -1.59 -37.67 16 17 C -0.23 -13.33 10.41 84.03 0.87 -12.45 16 18 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 20 N -0.99 -64.67 13.97 21.65 0.30 -64.37 16 21 Si 0.96 46.47 27.73 68.60 1.90 48.37 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 25 C -0.12 -4.13 5.36 30.59 0.16 -3.97 16 26 C -0.13 -3.60 4.19 30.58 0.13 -3.47 16 27 C 0.09 1.92 5.30 86.36 0.46 2.38 16 28 H 0.09 1.26 7.99 -2.91 -0.02 1.24 16 29 H 0.11 1.09 8.04 -2.91 -0.02 1.07 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.52 8.06 -2.38 -0.02 0.51 16 32 H 0.06 0.55 8.08 -2.39 -0.02 0.53 16 33 H 0.05 1.10 7.94 -2.39 -0.02 1.09 16 34 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 35 H 0.12 0.88 8.01 -2.39 -0.02 0.86 16 36 H 0.11 1.10 7.66 -2.39 -0.02 1.08 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 0.64 6.06 -2.39 -0.01 0.63 16 39 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 0.90 6.26 -2.39 -0.01 0.88 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.05 7.70 -2.39 -0.02 2.03 16 45 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 46 H 0.37 16.78 5.66 -92.71 -0.52 16.25 16 47 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 48 H 0.06 2.07 7.70 -2.39 -0.02 2.05 16 49 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.06 1.70 6.11 -2.38 -0.01 1.69 16 51 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.08 2.05 7.07 -2.39 -0.02 2.03 16 53 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -77.21 405.61 3.52 -73.70 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.29 Total: 29.25 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 6.07 Total: -9.14 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -3.37 Total: -115.10 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.38 Total: -27.07 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Total: -77.21 3.52 -73.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105472706.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.547 kcal (2) G-P(sol) polarization free energy of solvation -77.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds