Wall clock time and date at job start Tue Mar 31 2020 19:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.53004 * 109.46976 * 240.00120 * 2 1 3 5 5 C 1.50700 * 109.47456 * 120.00290 * 2 1 3 6 6 C 1.32988 * 120.00046 * 75.07952 * 5 2 1 7 7 C 1.47104 * 120.00231 * 347.02442 * 6 5 2 8 8 O 1.21612 * 119.99654 * 356.86683 * 7 6 5 9 9 N 1.34777 * 120.00240 * 176.86827 * 7 6 5 10 10 C 1.46920 * 120.63020 * 5.19171 * 9 7 6 11 11 C 1.52759 * 109.01267 * 233.58791 * 10 9 7 12 12 C 1.53046 * 109.38080 * 305.58899 * 11 10 9 13 13 O 1.42902 * 109.45939 * 181.25649 * 12 11 10 14 14 C 1.42901 * 113.99535 * 89.93597 * 13 12 11 15 15 C 1.53951 * 113.73767 * 248.74034 * 14 13 12 16 16 N 1.47817 * 86.03409 * 222.08393 * 15 14 13 17 17 C 1.36938 * 134.45615 * 204.63828 * 16 15 14 18 18 H 1.08001 * 119.99712 * 179.86811 * 17 16 15 19 19 C 1.38808 * 119.99956 * 359.87340 * 17 16 15 20 20 N 1.31616 * 119.99994 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47006 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47029 * 119.99831 * 21 19 17 24 24 H 1.48500 * 109.47322 * 240.00289 * 21 19 17 25 25 C 1.47578 * 91.05116 * 24.55174 * 16 15 14 26 26 C 1.53042 * 109.53622 * 61.23695 * 12 11 10 27 27 C 1.46921 * 120.63126 * 185.47673 * 9 7 6 28 28 H 1.08999 * 109.46927 * 331.51717 * 1 2 3 29 29 H 1.08997 * 109.46998 * 91.52295 * 1 2 3 30 30 H 1.08994 * 109.46926 * 211.52389 * 1 2 3 31 31 H 1.09004 * 109.46928 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47326 * 299.99827 * 3 2 1 33 33 H 1.09003 * 109.47267 * 60.00149 * 3 2 1 34 34 H 1.09004 * 109.46927 * 265.54786 * 4 2 1 35 35 H 1.08998 * 109.47317 * 25.54890 * 4 2 1 36 36 H 1.09003 * 109.46869 * 145.54729 * 4 2 1 37 37 H 1.07998 * 119.99996 * 255.08776 * 5 2 1 38 38 H 1.08001 * 119.99924 * 166.74549 * 6 5 2 39 39 H 1.09000 * 109.58748 * 353.42437 * 10 9 7 40 40 H 1.09005 * 109.58510 * 113.84527 * 10 9 7 41 41 H 1.08995 * 109.56914 * 185.55575 * 11 10 9 42 42 H 1.08993 * 109.36257 * 65.49639 * 11 10 9 43 43 H 1.09002 * 109.44637 * 301.22516 * 12 11 10 44 44 H 1.09001 * 112.95048 * 20.33021 * 14 13 12 45 45 H 1.08999 * 113.77153 * 336.34531 * 15 14 13 46 46 H 1.08992 * 113.77094 * 107.75034 * 15 14 13 47 47 H 0.96998 * 119.99869 * 179.97438 * 20 19 17 48 48 H 1.09007 * 113.76870 * 221.15319 * 25 16 15 49 49 H 1.09001 * 113.77283 * 89.75413 * 25 16 15 50 50 H 1.09002 * 109.49772 * 178.68338 * 26 12 11 51 51 H 1.09004 * 109.52297 * 58.60768 * 26 12 11 52 52 H 1.08997 * 109.58753 * 246.15379 * 27 9 7 53 53 H 1.09008 * 109.58731 * 6.43534 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.9745 -2.0371 1.3024 7 6 1.1728 -2.7924 0.3274 8 8 0.5176 -2.2011 -0.5092 9 7 1.1645 -4.1398 0.3612 10 6 1.8584 -4.8660 1.4334 11 6 2.8162 -5.8792 0.8093 12 6 2.0445 -6.7767 -0.1609 13 8 2.9331 -7.7440 -0.7238 14 6 3.0212 -8.9576 0.0256 15 6 4.3843 -9.1657 0.7101 16 7 4.2725 -10.5738 0.2747 17 6 4.7946 -11.7593 0.7188 18 1 4.5498 -12.6809 0.2116 19 6 5.6384 -11.7766 1.8209 20 7 5.9370 -10.6535 2.4387 21 14 6.3500 -13.3938 2.4271 22 1 5.8633 -14.5022 1.5669 23 1 7.8327 -13.3353 2.3681 24 1 5.9193 -13.6299 3.8285 25 6 3.3711 -10.1895 -0.8287 26 6 1.4445 -5.9231 -1.2806 27 6 0.4665 -4.9103 -0.6769 28 1 -0.3633 0.9033 0.4901 29 1 -0.3633 -0.0273 -1.0273 30 1 -0.3633 -0.8760 0.5373 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.2363 -1.7666 -1.0106 35 1 1.2870 -0.6632 -2.0352 36 1 2.9601 -0.2478 -1.5920 37 1 2.4394 -0.1422 2.0537 38 1 2.5198 -2.5603 2.0741 39 1 2.4216 -4.1622 2.0463 40 1 1.1289 -5.3895 2.0516 41 1 3.2627 -6.4905 1.5934 42 1 3.6007 -5.3495 0.2691 43 1 1.2443 -7.2870 0.3752 44 1 2.1694 -9.1107 0.6883 45 1 5.2017 -8.6227 0.2356 46 1 4.3571 -9.0357 1.7919 47 1 6.5264 -10.6656 3.2090 48 1 2.5363 -10.8754 -0.9732 49 1 3.8902 -9.9479 -1.7563 50 1 0.9148 -6.5657 -1.9839 51 1 2.2418 -5.3930 -1.8017 52 1 -0.3787 -5.4375 -0.2345 53 1 0.1094 -4.2355 -1.4550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105699878.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:09 Heat of formation + Delta-G solvation = 4.520175 kcal Electronic energy + Delta-G solvation = -30041.593158 eV Core-core repulsion = 26109.282960 eV Total energy + Delta-G solvation = -3932.310198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.74399 -40.39514 -39.17532 -37.60164 -36.50649 -34.18176 -33.37498 -32.21902 -31.76943 -29.44252 -28.12824 -28.03866 -26.61872 -26.34512 -24.85368 -24.64758 -23.47547 -21.88745 -21.26390 -20.45468 -19.04873 -18.77970 -18.27901 -17.73699 -17.00069 -16.79085 -16.61823 -16.03503 -15.79449 -15.70846 -15.24992 -15.15950 -14.92077 -14.77198 -14.59364 -14.53603 -14.32130 -13.82752 -13.57436 -13.35348 -13.19817 -13.10998 -13.01769 -12.87387 -12.81763 -12.76109 -12.61712 -12.21876 -12.17217 -11.95591 -11.83373 -11.81525 -11.78574 -11.70762 -11.48374 -11.44554 -11.36800 -10.89212 -10.43723 -10.24003 -10.10298 -9.45718 -8.97823 -7.93316 -5.28316 0.44906 1.45778 1.47166 1.57606 2.09522 2.33072 2.42686 2.74855 3.26704 3.44601 3.60343 3.68251 3.79508 3.85863 3.97966 4.03791 4.07777 4.12124 4.19564 4.23071 4.33623 4.40856 4.46001 4.54381 4.59440 4.70325 4.78226 4.79618 4.83041 4.86492 4.87203 4.87647 4.92639 4.96028 4.98852 5.04039 5.18348 5.20472 5.22270 5.23525 5.25977 5.27836 5.37049 5.38774 5.48614 5.52145 5.55185 5.59534 5.76469 5.88106 6.47155 6.49586 6.88790 7.28090 7.56554 8.51676 9.24019 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002069 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.102368 B =13529.297918 C =14142.101999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.046 4.046 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.042 4.042 6 C -0.241 4.241 7 C 0.531 3.469 8 O -0.544 6.544 9 N -0.612 5.612 10 C 0.114 3.886 11 C -0.154 4.154 12 C 0.085 3.915 13 O -0.383 6.383 14 C 0.071 3.929 15 C 0.149 3.851 16 N -0.639 5.639 17 C -0.236 4.236 18 H 0.087 0.913 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.983 3.017 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.288 1.288 25 C 0.118 3.882 26 C -0.121 4.121 27 C 0.122 3.878 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.010 0.990 46 H 0.048 0.952 47 H 0.250 0.750 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.089 0.911 51 H 0.058 0.942 52 H 0.082 0.918 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.520 22.235 -1.741 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.047 4.047 3 C -0.195 4.195 4 C -0.174 4.174 5 C -0.061 4.061 6 C -0.261 4.261 7 C 0.324 3.676 8 O -0.425 6.425 9 N -0.345 5.345 10 C -0.009 4.009 11 C -0.193 4.193 12 C 0.027 3.973 13 O -0.301 6.301 14 C 0.012 3.988 15 C 0.023 3.977 16 N -0.368 5.368 17 C -0.364 4.364 18 H 0.105 0.895 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.811 3.189 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.215 1.215 25 C -0.007 4.007 26 C -0.159 4.159 27 C -0.001 4.001 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.028 0.972 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.108 0.892 51 H 0.077 0.923 52 H 0.100 0.900 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.613 22.357 -2.185 25.762 hybrid contribution 0.937 -1.172 0.445 1.565 sum -11.676 21.185 -1.740 24.252 Atomic orbital electron populations 1.21770 0.93274 0.99862 1.01222 1.19749 0.96390 0.95432 0.93080 1.21978 1.01100 0.94036 1.02410 1.22179 0.98748 0.99919 0.96515 1.24149 0.90797 0.94430 0.96722 1.22828 1.04625 0.95713 1.02964 1.18845 0.82402 0.81636 0.84737 1.90901 1.44716 1.67569 1.39294 1.48156 1.53287 1.05536 1.27541 1.21782 0.95271 0.94855 0.88976 1.22331 0.99042 0.98201 0.99679 1.22296 0.91378 0.89152 0.94435 1.87933 1.65702 1.25733 1.50771 1.24442 0.97420 0.83466 0.93456 1.22641 0.93556 0.83595 0.97881 1.46107 1.55681 1.02913 1.32115 1.19457 1.22601 0.85060 1.09247 0.89522 1.25703 1.00750 1.00781 0.98889 1.70018 1.40510 1.26637 1.23004 0.84943 0.77319 0.78819 0.77824 1.18829 1.22035 1.21484 1.22883 0.92893 0.93140 0.91771 1.21912 0.99122 0.97231 0.97637 1.21504 0.94103 0.93270 0.91198 0.93580 0.93931 0.93028 0.92145 0.92578 0.91351 0.93071 0.93738 0.94629 0.83011 0.83220 0.87350 0.89748 0.90862 0.92054 0.90930 0.88440 0.97211 0.93400 0.94109 0.91450 0.93949 0.89219 0.92309 0.90019 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 7.59 71.98 0.55 -1.42 16 2 C -0.05 -0.78 0.75 -52.93 -0.04 -0.82 16 3 C -0.14 -1.73 8.04 71.98 0.58 -1.15 16 4 C -0.12 -2.44 7.55 71.98 0.54 -1.90 16 5 C -0.04 -0.59 8.49 24.52 0.21 -0.38 16 6 C -0.24 -3.86 8.81 23.43 0.21 -3.66 16 7 C 0.53 11.04 5.70 86.57 0.49 11.54 16 8 O -0.54 -13.36 8.17 -4.07 -0.03 -13.39 16 9 N -0.61 -11.81 2.98 -824.03 -2.45 -14.26 16 10 C 0.11 1.92 6.32 86.22 0.55 2.46 16 11 C -0.15 -3.55 5.68 30.53 0.17 -3.38 16 12 C 0.09 2.11 2.57 30.62 0.08 2.18 16 13 O -0.38 -12.79 10.01 -148.98 -1.49 -14.28 16 14 C 0.07 2.67 4.44 31.26 0.14 2.81 16 15 C 0.15 7.25 7.36 86.44 0.64 7.89 16 16 N -0.64 -33.64 3.70 -720.75 -2.67 -36.31 16 17 C -0.24 -13.37 10.70 84.03 0.90 -12.47 16 18 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 19 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 20 N -0.95 -57.54 11.39 21.65 0.25 -57.29 16 21 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.12 4.91 8.77 86.49 0.76 5.67 16 26 C -0.12 -2.57 5.73 30.67 0.18 -2.39 16 27 C 0.12 2.29 6.42 86.36 0.55 2.85 16 28 H 0.05 0.72 7.80 -2.39 -0.02 0.70 16 29 H 0.04 0.91 7.19 -2.39 -0.02 0.89 16 30 H 0.05 1.13 5.73 -2.39 -0.01 1.12 16 31 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.67 8.11 -2.39 -0.02 0.65 16 34 H 0.05 1.22 4.37 -2.39 -0.01 1.21 16 35 H 0.04 1.03 7.02 -2.39 -0.02 1.02 16 36 H 0.03 0.68 7.76 -2.39 -0.02 0.66 16 37 H 0.15 1.30 8.02 -2.91 -0.02 1.27 16 38 H 0.15 1.76 5.86 -2.91 -0.02 1.74 16 39 H 0.11 1.43 5.30 -2.39 -0.01 1.42 16 40 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.63 7.43 -2.39 -0.02 1.61 16 44 H 0.10 3.35 7.47 -2.39 -0.02 3.33 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.05 2.54 7.16 -2.39 -0.02 2.52 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 48 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 49 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.09 1.83 7.04 -2.38 -0.02 1.82 16 Total: -1.00 -69.58 399.47 3.47 -66.12 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.88 Total: 17.44 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.96 Total: 4.39 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.88 Total: -107.86 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.52 Total: -27.68 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -69.58 3.47 -66.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105699878.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.635 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds