Wall clock time and date at job start Tue Mar 31 2020 20:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00346 * 2 1 4 4 C 1.53001 * 109.47572 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46801 * 185.14270 * 4 3 2 6 6 N 1.46499 * 109.46051 * 54.86018 * 5 4 3 7 7 C 1.34767 * 120.00304 * 57.72580 * 6 5 4 8 8 O 1.21615 * 120.00112 * 5.05145 * 7 6 5 9 9 C 1.43205 * 120.00223 * 185.04161 * 7 6 5 10 10 C 6.07218 * 101.47319 * 50.92032 * 2 1 3 11 11 C 7.27951 * 94.52202 * 53.04336 * 2 1 3 12 12 C 1.53003 * 109.46812 * 127.34089 * 11 10 9 13 13 C 1.52992 * 109.47137 * 247.33899 * 11 10 9 14 14 C 1.53001 * 109.47330 * 7.34356 * 11 10 9 15 15 C 1.53040 * 109.45340 * 174.82861 * 5 4 3 16 16 C 1.53195 * 109.31012 * 181.37278 * 15 5 4 17 17 N 1.46927 * 108.77589 * 305.36124 * 16 15 5 18 18 C 1.36934 * 120.63558 * 233.58581 * 17 16 15 19 19 H 1.08007 * 119.99426 * 30.96031 * 18 17 16 20 20 C 1.38809 * 120.00332 * 211.23816 * 18 17 16 21 21 N 1.31623 * 119.99863 * 10.76480 * 20 18 17 22 22 Si 1.86800 * 120.00134 * 190.77047 * 20 18 17 23 23 H 1.48504 * 109.47086 * 59.99759 * 22 20 18 24 24 H 1.48495 * 109.47041 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46857 * 299.99927 * 22 20 18 26 26 C 1.46929 * 118.73263 * 53.85939 * 17 16 15 27 27 C 1.53034 * 109.45008 * 294.88473 * 5 4 3 28 28 H 1.09004 * 109.46799 * 299.99134 * 1 2 3 29 29 H 1.08996 * 109.47090 * 59.99382 * 1 2 3 30 30 H 1.09002 * 109.46814 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46465 * 60.00396 * 3 2 1 32 32 H 1.09005 * 109.47140 * 300.00959 * 3 2 1 33 33 H 1.09000 * 109.46903 * 65.14068 * 4 3 2 34 34 H 1.09002 * 109.46552 * 305.14093 * 4 3 2 35 35 H 0.96997 * 119.99302 * 237.72864 * 6 5 4 36 36 H 1.09002 * 109.47269 * 60.00090 * 12 11 10 37 37 H 1.09000 * 109.46932 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47501 * 300.00416 * 12 11 10 39 39 H 1.09004 * 109.46779 * 60.00511 * 13 11 10 40 40 H 1.09000 * 109.47441 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.47585 * 300.00555 * 13 11 10 42 42 H 1.09004 * 109.47207 * 59.99768 * 14 11 10 43 43 H 1.09003 * 109.46835 * 179.97438 * 14 11 10 44 44 H 1.08991 * 109.46909 * 299.99972 * 14 11 10 45 45 H 1.09002 * 109.50058 * 61.41910 * 15 5 4 46 46 H 1.09006 * 109.50181 * 301.32316 * 15 5 4 47 47 H 1.09008 * 109.58399 * 185.57857 * 16 15 5 48 48 H 1.08998 * 109.58818 * 65.15327 * 16 15 5 49 49 H 0.96993 * 119.99864 * 179.97438 * 21 20 18 50 50 H 1.09004 * 109.58516 * 65.92958 * 26 17 16 51 51 H 1.09005 * 109.58202 * 186.34889 * 26 17 16 52 52 H 1.08999 * 109.50200 * 298.57799 * 27 5 4 53 53 H 1.09000 * 109.49352 * 58.67656 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1573 2.5766 0.1287 6 7 3.6217 3.2418 1.3190 7 6 3.7597 2.6685 2.5308 8 8 4.4077 1.6462 2.6497 9 6 3.1436 3.2631 3.6787 10 6 2.6368 3.7514 4.6195 11 6 2.0029 4.3629 5.7989 12 6 0.5145 4.5830 5.5212 13 6 2.1651 3.4343 7.0039 14 6 2.6702 5.7070 6.0972 15 6 5.6767 2.4461 0.2577 16 6 6.2927 3.8392 0.4214 17 7 5.8525 4.6852 -0.6963 18 6 6.7661 5.3476 -1.4720 19 1 7.7459 4.9230 -1.6338 20 6 6.4349 6.5674 -2.0458 21 7 5.3341 7.1895 -1.6800 22 14 7.5513 7.3260 -3.3371 23 1 7.6661 6.4040 -4.4956 24 1 6.9787 8.6197 -3.7882 25 1 8.8970 7.5576 -2.7535 26 6 4.4130 4.8118 -0.9620 27 6 3.8184 3.4035 -1.1136 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8462 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8632 0.7254 -0.9333 34 1 3.8513 0.5661 0.8395 35 1 3.1678 4.0948 1.2348 36 1 0.0390 3.6254 5.3087 37 1 0.0450 5.0354 6.3947 38 1 0.3989 5.2445 4.6626 39 1 3.2255 3.2776 7.2017 40 1 1.6953 3.8869 7.8772 41 1 1.6897 2.4767 6.7914 42 1 2.5547 6.3686 5.2387 43 1 2.2005 6.1599 6.9704 44 1 3.7305 5.5502 6.2950 45 1 6.0787 1.9735 -0.6385 46 1 5.9169 1.8374 1.1295 47 1 7.3799 3.7611 0.4143 48 1 5.9618 4.2767 1.3633 49 1 5.1029 8.0420 -2.0807 50 1 3.9319 5.3271 -0.1306 51 1 4.2595 5.3759 -1.8821 52 1 4.2379 2.9220 -1.9969 53 1 2.7358 3.4763 -1.2179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151121073.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:00 Heat of formation + Delta-G solvation = -39.882536 kcal Electronic energy + Delta-G solvation = -30661.363912 eV Core-core repulsion = 26727.128268 eV Total energy + Delta-G solvation = -3934.235644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75302 -39.15967 -38.64371 -38.43152 -36.25953 -34.05720 -33.42320 -32.48391 -31.62403 -30.52882 -28.21981 -28.20498 -27.71632 -26.50411 -25.31892 -24.57558 -23.73612 -22.22601 -21.83918 -20.30326 -19.64282 -18.71122 -17.56135 -17.12077 -16.95594 -16.78634 -16.52716 -16.10961 -15.84224 -15.72160 -15.32482 -15.23560 -15.21646 -15.15381 -14.86549 -14.32774 -14.13363 -13.86368 -13.37292 -13.33798 -13.25820 -13.03617 -12.87191 -12.76431 -12.65588 -12.63540 -12.55812 -12.39748 -12.29520 -12.26848 -12.19253 -12.13328 -11.99512 -11.81335 -11.60025 -11.35208 -11.27054 -11.26272 -10.86106 -10.58300 -10.53965 -10.09067 -8.61389 -7.86225 -5.35834 0.50829 1.23392 1.48686 1.49417 1.56319 2.05668 2.47133 2.51488 2.76227 3.09300 3.29915 3.68233 3.73591 3.88892 3.94374 3.95438 4.01532 4.05431 4.15765 4.26045 4.35796 4.42288 4.50041 4.50226 4.54635 4.65584 4.72105 4.72776 4.73602 4.79710 4.82216 4.84608 4.93554 4.94607 4.94861 4.97032 5.06046 5.08685 5.13585 5.18010 5.20833 5.28098 5.34440 5.35482 5.45724 5.56132 5.64392 5.76167 6.17678 6.20897 6.41544 6.45340 7.07053 7.17776 7.85287 8.38831 9.18987 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.003723 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.359956 B = 7519.385522 C = 9555.776316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.071 3.929 4 C -0.121 4.121 5 C 0.200 3.800 6 N -0.693 5.693 7 C 0.634 3.366 8 O -0.554 6.554 9 C -0.269 4.269 10 C -0.048 4.048 11 C 0.031 3.969 12 C -0.138 4.138 13 C -0.140 4.140 14 C -0.142 4.142 15 C -0.132 4.132 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.267 4.267 19 H 0.060 0.940 20 C -0.041 4.041 21 N -0.931 5.931 22 Si 0.966 3.034 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.180 3.820 27 C -0.132 4.132 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.408 0.592 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.003 0.997 49 H 0.251 0.749 50 H 0.006 0.994 51 H 0.063 0.937 52 H 0.076 0.924 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.120 -6.944 12.278 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.005 4.005 4 C -0.159 4.159 5 C 0.115 3.885 6 N -0.343 5.343 7 C 0.422 3.578 8 O -0.435 6.435 9 C -0.271 4.271 10 C -0.051 4.051 11 C 0.031 3.969 12 C -0.195 4.195 13 C -0.197 4.197 14 C -0.199 4.199 15 C -0.172 4.172 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.397 4.397 19 H 0.078 0.922 20 C -0.237 4.237 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.054 3.946 27 C -0.171 4.171 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.021 0.979 49 H 0.060 0.940 50 H 0.024 0.976 51 H 0.081 0.919 52 H 0.094 0.906 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.604 -7.681 12.251 19.854 hybrid contribution 0.569 1.212 -0.830 1.575 sum -13.035 -6.469 11.421 18.499 Atomic orbital electron populations 1.22927 0.79572 1.03865 1.00697 1.87830 1.21504 1.28645 1.95561 1.22470 0.93338 0.84310 1.00407 1.21819 0.93969 0.96368 1.03749 1.20155 0.92973 0.91273 0.84085 1.45982 1.58116 1.24637 1.05582 1.14819 0.78956 0.82864 0.81144 1.90749 1.41390 1.25524 1.85791 1.20913 1.04400 1.03804 0.98024 1.23457 0.92832 0.94062 0.94737 1.18299 0.95814 0.95560 0.87236 1.21914 0.91322 1.02622 1.03677 1.21926 1.02584 0.98878 0.96311 1.21934 1.00700 0.93928 1.03310 1.22268 0.94561 0.98073 1.02296 1.20836 0.96860 0.90192 0.89357 1.44229 1.02513 1.54032 1.32079 1.19437 0.96730 0.99481 1.24031 0.92224 1.25797 0.99264 0.96101 1.02566 1.70089 1.26778 1.16019 1.44777 0.85370 0.78476 0.77280 0.79429 1.20346 1.21775 1.20669 1.20704 0.82590 0.92105 0.99195 1.22474 1.01152 0.97569 0.95955 0.93848 0.92873 0.88222 0.94035 0.91796 0.89693 0.91165 0.75593 0.92194 0.88469 0.92312 0.92807 0.88370 0.92325 0.92581 0.88277 0.92856 0.91134 0.91020 0.93656 0.97862 0.93997 0.97608 0.91896 0.90580 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -11.69 10.70 -148.98 -1.59 -13.28 16 3 C 0.07 1.96 5.44 71.98 0.39 2.35 16 4 C -0.12 -3.74 4.29 30.60 0.13 -3.61 16 5 C 0.20 6.72 0.35 3.63 0.00 6.72 16 6 N -0.69 -22.84 3.13 -430.30 -1.35 -24.18 16 7 C 0.63 22.50 6.72 85.49 0.57 23.07 16 8 O -0.55 -22.52 13.38 -4.08 -0.05 -22.57 16 9 C -0.27 -8.54 13.62 30.01 0.41 -8.13 16 10 C -0.05 -1.26 11.77 31.11 0.37 -0.89 16 11 C 0.03 0.53 0.95 -53.99 -0.05 0.48 16 12 C -0.14 -1.80 8.43 71.98 0.61 -1.19 16 13 C -0.14 -1.95 8.43 71.98 0.61 -1.35 16 14 C -0.14 -2.18 8.43 71.98 0.61 -1.57 16 15 C -0.13 -5.02 4.70 30.67 0.14 -4.87 16 16 C 0.15 6.81 6.26 86.36 0.54 7.35 16 17 N -0.60 -29.99 2.98 -698.23 -2.08 -32.08 16 18 C -0.27 -14.59 9.58 84.03 0.81 -13.78 16 19 H 0.06 3.24 7.85 -2.91 -0.02 3.22 16 20 C -0.04 -2.26 5.05 84.86 0.43 -1.84 16 21 N -0.93 -52.93 11.02 21.65 0.24 -52.69 16 22 Si 0.97 44.26 29.57 68.60 2.03 46.29 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.18 8.07 5.01 86.51 0.43 8.50 16 27 C -0.13 -4.56 4.77 30.81 0.15 -4.41 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.16 7.02 -2.39 -0.02 1.15 16 32 H 0.06 1.57 6.79 -2.38 -0.02 1.55 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.50 6.34 -2.39 -0.02 2.48 16 35 H 0.41 12.87 7.16 -92.71 -0.66 12.20 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 45 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.07 2.81 6.20 -2.38 -0.01 2.79 16 47 H 0.04 2.03 7.93 -2.38 -0.02 2.01 16 48 H 0.00 0.16 7.74 -2.39 -0.02 0.14 16 49 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 50 H 0.01 0.27 6.89 -2.38 -0.02 0.26 16 51 H 0.06 3.23 6.07 -2.38 -0.01 3.21 16 52 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 53 H 0.08 2.42 6.62 -2.39 -0.02 2.41 16 Total: -1.00 -67.96 413.98 4.80 -63.16 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.22 Total: 26.80 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 7.39 Total: 8.56 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -3.19 Total: -108.95 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -1.65 Total: -35.85 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.96 4.80 -63.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151121073.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.273 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds