Wall clock time and date at job start Tue Mar 31 2020 20:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21618 * 119.99595 * 359.97438 * 7 6 5 9 9 C 1.43195 * 120.00318 * 180.02562 * 7 6 5 10 10 C 4.86369 * 103.81712 * 151.38550 * 2 1 3 11 11 C 5.96540 * 95.41739 * 157.60886 * 2 1 3 12 12 C 1.52996 * 109.47209 * 319.03210 * 11 10 9 13 13 C 1.52999 * 109.46872 * 79.03052 * 11 10 9 14 14 C 1.53002 * 109.46991 * 199.02567 * 11 10 9 15 15 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 16 16 C 1.53196 * 109.31301 * 178.62714 * 15 4 3 17 17 N 1.46919 * 108.77357 * 54.63738 * 16 15 4 18 18 C 1.36935 * 120.62952 * 126.36714 * 17 16 15 19 19 H 1.07992 * 120.00276 * 332.45452 * 18 17 16 20 20 C 1.38815 * 120.00026 * 152.17450 * 18 17 16 21 21 N 1.31620 * 119.99785 * 343.17001 * 20 18 17 22 22 Si 1.86799 * 120.00242 * 163.17219 * 20 18 17 23 23 H 1.48499 * 109.47051 * 59.99668 * 22 20 18 24 24 H 1.48497 * 109.47273 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46803 * 299.99780 * 22 20 18 26 26 C 1.46930 * 118.74055 * 306.64082 * 17 16 15 27 27 C 1.52762 * 109.00426 * 53.31040 * 26 17 16 28 28 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 30 30 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 31 31 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 32 32 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 33 33 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 35 35 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47594 * 59.99625 * 12 11 10 37 37 H 1.08998 * 109.47086 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.47040 * 299.99538 * 12 11 10 39 39 H 1.08998 * 109.47374 * 59.99559 * 13 11 10 40 40 H 1.08999 * 109.47292 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47307 * 299.99945 * 13 11 10 42 42 H 1.09005 * 109.46255 * 60.00532 * 14 11 10 43 43 H 1.08998 * 109.46873 * 179.97438 * 14 11 10 44 44 H 1.08998 * 109.47097 * 300.00344 * 14 11 10 45 45 H 1.09005 * 109.49382 * 58.67827 * 15 4 3 46 46 H 1.08991 * 109.52573 * 298.59920 * 15 4 3 47 47 H 1.09000 * 109.58299 * 294.85003 * 16 15 4 48 48 H 1.08994 * 109.70288 * 174.49711 * 16 15 4 49 49 H 0.97003 * 120.00199 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.58738 * 173.14187 * 26 17 16 51 51 H 1.08996 * 109.58558 * 293.57263 * 26 17 16 52 52 H 1.09005 * 109.56252 * 185.54994 * 27 26 17 53 53 H 1.08999 * 109.38709 * 65.51901 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3763 -1.4226 3.1752 9 6 3.0670 -3.0731 2.2627 10 6 2.5905 -4.1461 2.2619 11 6 1.9922 -5.4910 2.2622 12 6 0.7898 -5.5140 3.2081 13 6 1.5340 -5.8456 0.8462 14 6 3.0309 -6.5112 2.7326 15 6 4.1577 2.5827 0.0000 16 6 5.6842 2.4579 0.0353 17 7 6.1149 1.6053 -1.0810 18 6 7.0604 2.0436 -1.9692 19 1 7.1785 3.1010 -2.1543 20 6 7.8713 1.1291 -2.6274 21 7 7.9743 -0.1031 -2.1762 22 14 8.8162 1.6472 -4.1532 23 1 9.7363 2.7614 -3.8110 24 1 9.6015 0.4950 -4.6641 25 1 7.8612 2.0968 -5.1978 26 6 5.5073 0.2759 -1.2298 27 6 3.9868 0.4229 -1.2477 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 5.0728 0.3402 1.2515 34 1 3.6637 0.9675 2.1400 35 1 2.8100 -1.1850 0.5233 36 1 0.0499 -4.7872 2.8730 37 1 0.3470 -6.5100 3.2087 38 1 1.1163 -5.2614 4.2169 39 1 2.3905 -5.8292 0.1723 40 1 1.0913 -6.8417 0.8463 41 1 0.7940 -5.1188 0.5110 42 1 3.3573 -6.2584 3.7415 43 1 2.5877 -7.5070 2.7333 44 1 3.8874 -6.4947 2.0587 45 1 3.8173 3.1328 0.8773 46 1 3.8570 3.1149 -0.9023 47 1 5.9922 2.0077 0.9790 48 1 6.1360 3.4449 -0.0633 49 1 8.5406 -0.7423 -2.6363 50 1 5.8403 -0.1756 -2.1644 51 1 5.8007 -0.3559 -0.3915 52 1 3.5248 -0.5643 -1.2585 53 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162264667.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:16 Heat of formation + Delta-G solvation = -39.587244 kcal Electronic energy + Delta-G solvation = -30599.534518 eV Core-core repulsion = 26665.311679 eV Total energy + Delta-G solvation = -3934.222839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.39424 -39.95286 -38.45920 -38.30662 -36.13453 -34.70727 -33.30959 -32.59621 -31.64933 -28.99202 -28.20818 -28.17991 -27.97358 -26.97677 -25.49297 -24.42681 -23.81037 -22.52295 -21.78177 -20.31471 -19.32373 -18.23999 -17.41310 -17.11190 -17.01559 -16.86750 -16.70510 -16.35103 -16.00781 -15.42586 -15.34528 -15.30165 -15.20673 -15.14974 -14.84326 -14.42737 -14.14170 -13.75865 -13.38214 -13.34070 -13.28350 -13.06889 -12.98684 -12.73889 -12.66587 -12.61550 -12.54261 -12.33748 -12.30442 -12.28634 -12.24500 -12.02096 -11.83525 -11.66247 -11.38521 -11.30482 -11.22211 -11.17555 -11.12314 -10.56547 -10.48763 -10.05341 -8.65323 -7.85472 -5.31191 0.50645 1.25347 1.46472 1.48690 1.55677 2.06767 2.46652 2.52038 2.75146 3.23115 3.30085 3.63972 3.72324 3.89712 3.95933 3.96899 3.97603 4.02949 4.24372 4.34513 4.46394 4.49341 4.54278 4.59893 4.63563 4.68625 4.72414 4.74422 4.75786 4.81274 4.84335 4.90549 4.91291 4.96525 4.96681 5.03999 5.08060 5.14678 5.19889 5.21927 5.24589 5.35124 5.35675 5.38271 5.42408 5.52682 5.65364 5.78253 6.18051 6.23945 6.39765 6.54386 7.13528 7.16005 7.88129 8.39887 9.20488 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.003182 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.862151 B = 8798.267781 C = 9946.533218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.413 6.413 3 C 0.080 3.920 4 C -0.052 4.052 5 C 0.137 3.863 6 N -0.681 5.681 7 C 0.620 3.380 8 O -0.584 6.584 9 C -0.266 4.266 10 C -0.045 4.045 11 C 0.032 3.968 12 C -0.137 4.137 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.107 4.107 16 C 0.136 3.864 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.070 0.930 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.182 3.818 27 C -0.110 4.110 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.419 0.581 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.009 0.991 48 H 0.059 0.941 49 H 0.247 0.753 50 H 0.048 0.952 51 H -0.013 1.013 52 H 0.061 0.939 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.350 -7.594 5.973 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.332 6.332 3 C 0.004 3.996 4 C -0.052 4.052 5 C 0.013 3.987 6 N -0.336 5.336 7 C 0.408 3.592 8 O -0.466 6.466 9 C -0.269 4.269 10 C -0.047 4.047 11 C 0.032 3.968 12 C -0.194 4.194 13 C -0.197 4.197 14 C -0.200 4.200 15 C -0.146 4.146 16 C 0.011 3.989 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.056 3.944 27 C -0.149 4.149 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.027 0.973 48 H 0.078 0.922 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.005 0.995 52 H 0.080 0.920 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.645 -7.578 6.497 23.836 hybrid contribution 1.022 0.335 -0.958 1.440 sum -20.623 -7.243 5.539 22.549 Atomic orbital electron populations 1.22883 0.79257 1.03605 1.00827 1.87504 1.21517 1.28660 1.95542 1.22604 0.90834 0.84551 1.01658 1.20721 0.94389 0.96413 0.93719 1.21406 0.97242 0.81913 0.98094 1.46049 1.49056 1.14230 1.24231 1.15061 0.79766 0.82035 0.82362 1.90787 1.39603 1.78052 1.38197 1.20686 1.04552 0.95270 1.06393 1.23423 0.92989 0.93604 0.94700 1.18321 0.95970 0.83270 0.99286 1.21908 0.95266 1.04442 0.97831 1.21931 1.01687 1.03651 0.92442 1.21954 0.97898 0.98969 1.01215 1.21845 0.95553 0.93947 1.03253 1.21110 0.93908 0.94517 0.89390 1.44288 1.44611 1.15402 1.28852 1.19526 1.10341 0.92569 1.16705 0.91190 1.25840 0.99049 0.96725 1.03304 1.70224 1.41968 1.05571 1.40568 0.85330 0.78291 0.76733 0.80018 1.20153 1.22383 1.20141 1.20421 0.89773 0.85982 0.98191 1.21864 0.96722 0.99518 0.96796 0.88843 0.93406 0.92891 0.91536 0.91419 0.93687 0.91176 0.73767 0.91862 0.88326 0.92677 0.92945 0.88394 0.91732 0.92655 0.88155 0.92986 0.89047 0.90539 0.97344 0.92209 0.94364 0.93359 0.99543 0.92013 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -9.50 6.73 -148.98 -1.00 -10.50 16 3 C 0.08 1.83 4.80 71.98 0.35 2.17 16 4 C -0.05 -1.59 0.51 -52.16 -0.03 -1.62 16 5 C 0.14 4.85 3.80 86.38 0.33 5.18 16 6 N -0.68 -23.57 4.62 -470.75 -2.17 -25.74 16 7 C 0.62 24.12 7.65 85.49 0.65 24.78 16 8 O -0.58 -27.17 17.09 -4.09 -0.07 -27.24 16 9 C -0.27 -8.86 13.61 30.01 0.41 -8.45 16 10 C -0.04 -1.17 11.77 31.13 0.37 -0.81 16 11 C 0.03 0.52 0.95 -53.99 -0.05 0.47 16 12 C -0.14 -1.66 8.43 71.98 0.61 -1.05 16 13 C -0.14 -1.84 8.43 71.98 0.61 -1.23 16 14 C -0.14 -2.14 8.43 71.98 0.61 -1.53 16 15 C -0.11 -3.25 4.91 30.67 0.15 -3.10 16 16 C 0.14 5.60 6.05 86.37 0.52 6.13 16 17 N -0.61 -30.88 3.00 -699.95 -2.10 -32.98 16 18 C -0.26 -14.53 9.58 84.03 0.81 -13.73 16 19 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 20 C -0.05 -3.09 4.92 84.86 0.42 -2.67 16 21 N -0.94 -57.57 11.18 21.65 0.24 -57.33 16 22 Si 0.97 45.72 29.59 68.60 2.03 47.75 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.18 9.05 4.81 86.22 0.41 9.46 16 27 C -0.11 -4.09 4.57 30.53 0.14 -3.95 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.04 2.00 4.99 -2.38 -0.01 1.99 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.42 13.16 4.67 -92.71 -0.43 12.73 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.01 0.38 6.69 -2.39 -0.02 0.36 16 48 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 49 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 50 H 0.05 2.74 6.05 -2.39 -0.01 2.73 16 51 H -0.01 -0.75 6.70 -2.39 -0.02 -0.76 16 52 H 0.06 2.19 6.49 -2.38 -0.02 2.17 16 53 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.85 414.04 4.92 -70.93 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.45 Total: 23.35 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 7.54 Total: 11.76 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -4.03 Total: -116.04 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.07 Total: -37.74 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -75.85 4.92 -70.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162264667.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.340 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds