Wall clock time and date at job start Tue Mar 31 2020 20:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47211 * 106.50026 * 4 3 2 6 6 C 1.52998 * 109.47239 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46830 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00383 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99790 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00205 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47245 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46472 * 60.02565 * 11 10 9 13 13 O 1.42907 * 109.46904 * 299.97343 * 12 11 10 14 14 C 1.42899 * 113.99635 * 179.97438 * 13 12 11 15 15 C 1.53042 * 109.45947 * 179.97438 * 11 10 9 16 16 C 1.53192 * 109.31216 * 58.65543 * 15 11 10 17 17 N 1.46930 * 108.77834 * 54.63480 * 16 15 11 18 18 C 1.36932 * 120.62872 * 126.36699 * 17 16 15 19 19 H 1.08002 * 120.00663 * 332.45264 * 18 17 16 20 20 C 1.38819 * 119.99763 * 152.17982 * 18 17 16 21 21 N 1.31619 * 119.99653 * 343.16079 * 20 18 17 22 22 Si 1.86799 * 120.00056 * 163.16209 * 20 18 17 23 23 H 1.48498 * 109.47033 * 89.99898 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99748 * 22 20 18 25 25 H 1.48496 * 109.47329 * 330.00182 * 22 20 18 26 26 C 1.46922 * 118.73694 * 306.64373 * 17 16 15 27 27 C 1.52760 * 109.00877 * 53.30539 * 26 17 16 28 28 H 1.08999 * 109.47089 * 253.49999 * 1 2 3 29 29 H 1.08996 * 109.47010 * 13.50096 * 1 2 3 30 30 H 1.08995 * 109.47116 * 133.50146 * 1 2 3 31 31 H 1.08996 * 109.47010 * 346.49904 * 4 3 2 32 32 H 1.08995 * 109.47116 * 226.49854 * 4 3 2 33 33 H 1.09005 * 109.47104 * 59.99769 * 5 4 3 34 34 H 1.09004 * 109.46758 * 299.99973 * 5 4 3 35 35 H 1.08996 * 109.47073 * 59.99822 * 6 5 4 36 36 H 1.08995 * 109.47024 * 299.99789 * 6 5 4 37 37 H 0.97003 * 120.00237 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.47152 * 59.99668 * 10 9 7 39 39 H 1.08995 * 109.46886 * 299.99837 * 10 9 7 40 40 H 1.09001 * 109.47035 * 59.97233 * 12 11 10 41 41 H 1.08991 * 109.47289 * 179.97438 * 12 11 10 42 42 H 1.09002 * 109.47085 * 60.00353 * 14 13 12 43 43 H 1.09006 * 109.46724 * 179.97438 * 14 13 12 44 44 H 1.08996 * 109.47883 * 299.99890 * 14 13 12 45 45 H 1.09002 * 109.49976 * 298.70465 * 15 11 10 46 46 H 1.09004 * 109.52502 * 178.62040 * 15 11 10 47 47 H 1.08997 * 109.58711 * 294.84701 * 16 15 11 48 48 H 1.09004 * 109.70548 * 174.49237 * 16 15 11 49 49 H 0.97007 * 119.99830 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.58958 * 173.14351 * 26 17 16 51 51 H 1.09005 * 109.58698 * 293.56931 * 26 17 16 52 52 H 1.08996 * 109.56719 * 185.54717 * 27 26 17 53 53 H 1.09007 * 109.38352 * 65.51663 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6277 0.4120 -1.3831 6 6 6.1577 0.4127 -1.3833 7 6 6.6595 0.8161 -2.7458 8 8 5.8712 1.0777 -3.6295 9 7 7.9846 0.8872 -2.9820 10 6 8.4726 1.2798 -4.3063 11 6 10.0026 1.2805 -4.3065 12 6 10.5130 -0.1222 -3.9707 13 8 10.0374 -0.5055 -2.6787 14 6 10.4591 -1.8072 -2.2669 15 6 10.5120 1.6901 -5.6903 16 6 9.9711 3.0805 -6.0382 17 7 10.3338 4.0121 -4.9615 18 6 10.9976 5.1767 -5.2409 19 1 11.6379 5.2388 -6.1084 20 6 10.8432 6.2796 -4.4120 21 7 9.8338 6.3330 -3.5691 22 14 12.0679 7.6878 -4.4932 23 1 11.6090 8.6859 -5.4924 24 1 12.1694 8.3330 -3.1596 25 1 13.3989 7.1639 -4.8923 26 6 9.9762 3.6674 -3.5788 27 6 10.5121 2.2731 -3.2591 28 1 -0.3633 -0.2919 0.9853 29 1 -0.3633 0.9992 -0.2399 30 1 -0.3633 -0.7074 -0.7454 31 1 4.4822 -0.9971 0.2399 32 1 4.4807 0.7095 0.7454 33 1 4.2634 1.4110 -1.6230 34 1 4.2649 -0.2958 -2.1285 35 1 6.5215 -0.5863 -1.1436 36 1 6.5207 1.1202 -0.6378 37 1 8.6151 0.6790 -2.2749 38 1 8.1084 2.2788 -4.5462 39 1 8.1098 0.5721 -5.0517 40 1 10.1494 -0.8293 -4.7162 41 1 11.6029 -0.1220 -3.9713 42 1 11.5480 -1.8424 -2.2322 43 1 10.0573 -2.0229 -1.2768 44 1 10.0941 -2.5491 -2.9770 45 1 10.1681 0.9698 -6.4326 46 1 11.6018 1.7147 -5.6847 47 1 8.8862 3.0371 -6.1338 48 1 10.4073 3.4201 -6.9776 49 1 9.7261 7.1035 -2.9896 50 1 10.4178 4.3927 -2.8954 51 1 8.8916 3.6728 -3.4697 52 1 10.1684 1.9677 -2.2709 53 1 11.6019 2.2919 -3.2754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162424437.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:20 Heat of formation + Delta-G solvation = -50.755973 kcal Electronic energy + Delta-G solvation = -30119.805586 eV Core-core repulsion = 26185.098435 eV Total energy + Delta-G solvation = -3934.707151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.29557 -39.94113 -38.25274 -36.66302 -36.00943 -34.54456 -34.15368 -32.69151 -31.62692 -30.59719 -28.95500 -28.08333 -27.10951 -26.30371 -25.46383 -23.90395 -23.03282 -22.48971 -21.12755 -19.86565 -18.76412 -17.94111 -17.32469 -17.13046 -16.92257 -16.87289 -16.72437 -16.46493 -16.13784 -15.60508 -15.30633 -15.24128 -15.05390 -14.79171 -14.69066 -14.45965 -14.31205 -14.16931 -14.06812 -13.73236 -13.39157 -13.22938 -13.13796 -13.04251 -12.90360 -12.62802 -12.52330 -12.45219 -12.28291 -12.25763 -11.98224 -11.84851 -11.82069 -11.43148 -11.20759 -11.09508 -10.82410 -10.61702 -10.57132 -10.53260 -10.44995 -9.83512 -8.64394 -7.85578 -5.30774 1.46191 1.47026 1.57155 1.72264 1.78097 1.80393 2.35918 2.51994 2.90925 3.29026 3.40112 3.68605 3.76065 3.85009 4.00312 4.01390 4.09129 4.16671 4.30167 4.48321 4.51817 4.53176 4.57508 4.64349 4.67390 4.69680 4.70498 4.73426 4.76468 4.78518 4.81656 4.85281 4.86631 4.90245 4.93785 4.98910 5.04903 5.15031 5.19043 5.21369 5.26300 5.30228 5.33384 5.38234 5.50970 5.65342 5.72224 5.81255 6.29618 6.40340 6.73457 6.83948 7.16660 7.48648 7.88708 8.40274 9.20478 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.002779 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.008054 B =10071.899135 C =11839.355884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.219 4.219 3 C -0.215 4.215 4 C -0.001 4.001 5 C -0.092 4.092 6 C -0.128 4.128 7 C 0.496 3.504 8 O -0.604 6.604 9 N -0.700 5.700 10 C 0.141 3.859 11 C -0.052 4.052 12 C 0.083 3.917 13 O -0.406 6.406 14 C 0.029 3.971 15 C -0.108 4.108 16 C 0.137 3.863 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.055 4.055 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.182 3.818 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.418 0.582 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.101 0.899 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.006 0.994 48 H 0.056 0.944 49 H 0.248 0.752 50 H 0.048 0.952 51 H -0.012 1.012 52 H 0.069 0.931 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 -21.140 8.174 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.219 4.219 3 C -0.215 4.215 4 C -0.037 4.037 5 C -0.130 4.130 6 C -0.167 4.167 7 C 0.284 3.716 8 O -0.486 6.486 9 N -0.357 5.357 10 C 0.016 3.984 11 C -0.053 4.053 12 C 0.006 3.994 13 O -0.325 6.325 14 C -0.067 4.067 15 C -0.148 4.148 16 C 0.012 3.988 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.192 1.192 26 C 0.057 3.943 27 C -0.148 4.148 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.132 0.868 37 H 0.261 0.739 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.119 0.881 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.024 0.976 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.006 0.994 52 H 0.087 0.913 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.068 -20.724 7.772 22.706 hybrid contribution 0.630 1.238 -0.146 1.396 sum -4.438 -19.486 7.625 21.390 Atomic orbital electron populations 1.19052 0.82631 1.03908 1.04258 1.23432 0.95487 1.01887 1.01135 1.23116 0.94956 1.01579 1.01894 1.18781 0.83230 1.04491 0.97247 1.21148 0.93867 1.01381 0.96580 1.21659 0.96179 1.05958 0.92946 1.21478 0.82278 0.76460 0.91407 1.90663 1.56757 1.52248 1.48979 1.46220 1.07025 1.67797 1.14619 1.21166 0.93546 0.98536 0.85155 1.20692 0.93128 0.94646 0.96791 1.22532 0.98334 0.93639 0.84891 1.87503 1.75073 1.35233 1.34715 1.22903 0.99668 0.82982 1.01136 1.21843 1.01215 0.96923 0.94802 1.21080 0.95908 0.90238 0.91580 1.44299 1.66899 1.19992 1.01995 1.19529 1.19097 0.89350 1.11020 0.91411 1.25828 0.98812 0.99672 1.00650 1.70223 1.29954 1.30621 1.27462 0.85283 0.79471 0.79263 0.76461 1.21456 1.21995 1.19234 1.20438 0.94536 0.93363 0.86010 1.21856 1.00028 0.95057 0.97842 0.88557 0.89497 0.89157 0.87079 0.87984 0.93828 0.92632 0.85289 0.86835 0.73885 0.94689 0.92536 0.91996 0.91869 0.93440 0.88073 0.93621 0.89525 0.90827 0.97596 0.92531 0.94320 0.93357 0.99393 0.91278 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.59 10.32 70.18 0.72 0.13 16 2 C -0.22 -4.95 14.13 31.12 0.44 -4.51 16 3 C -0.22 -5.06 13.34 31.12 0.42 -4.65 16 4 C 0.00 -0.02 5.70 28.79 0.16 0.14 16 5 C -0.09 -2.13 4.46 30.59 0.14 -1.99 16 6 C -0.13 -2.62 5.70 29.85 0.17 -2.45 16 7 C 0.50 15.69 7.83 87.66 0.69 16.38 16 8 O -0.60 -25.23 15.98 -3.03 -0.05 -25.27 16 9 N -0.70 -20.94 4.62 -463.06 -2.14 -23.08 16 10 C 0.14 4.79 3.80 86.38 0.33 5.12 16 11 C -0.05 -1.55 0.51 -52.16 -0.03 -1.58 16 12 C 0.08 1.80 4.80 71.98 0.35 2.14 16 13 O -0.41 -8.14 6.73 -148.98 -1.00 -9.14 16 14 C 0.03 0.38 11.01 113.37 1.25 1.62 16 15 C -0.11 -3.34 4.90 30.67 0.15 -3.19 16 16 C 0.14 5.71 6.05 86.36 0.52 6.23 16 17 N -0.61 -30.78 3.00 -699.92 -2.10 -32.88 16 18 C -0.26 -14.43 9.58 84.04 0.81 -13.63 16 19 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 20 C -0.05 -3.11 4.92 84.86 0.42 -2.69 16 21 N -0.94 -57.01 11.18 21.65 0.24 -56.77 16 22 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 C 0.18 8.86 4.81 86.22 0.41 9.28 16 27 C -0.11 -3.90 4.57 30.53 0.14 -3.76 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.26 8.10 -2.38 -0.02 1.24 16 34 H 0.05 1.45 8.10 -2.38 -0.02 1.43 16 35 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.42 10.71 4.71 -92.71 -0.44 10.28 16 38 H 0.03 1.54 4.99 -2.38 -0.01 1.53 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.01 0.27 6.69 -2.39 -0.02 0.26 16 48 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 49 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 50 H 0.05 2.69 6.05 -2.39 -0.01 2.68 16 51 H -0.01 -0.65 6.70 -2.38 -0.02 -0.67 16 52 H 0.07 2.26 6.50 -2.39 -0.02 2.25 16 53 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -77.84 415.13 4.51 -73.33 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.45 Total: 23.64 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 7.08 Total: 2.60 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -4.00 Total: -112.73 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.05 Total: -34.41 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.84 4.51 -73.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162424437.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.572 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds