Wall clock time and date at job start Tue Mar 31 2020 19:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46754 * 2 1 4 4 C 1.52999 * 109.47184 * 120.00223 * 2 1 3 5 5 C 1.52996 * 109.47185 * 65.77165 * 4 2 1 6 6 C 1.50706 * 115.54599 * 63.94963 * 5 4 2 7 7 O 1.21286 * 119.99548 * 238.70091 * 6 5 4 8 8 N 1.34771 * 120.00380 * 58.70359 * 6 5 4 9 9 C 1.46979 * 120.72116 * 5.35831 * 8 6 5 10 10 C 1.53159 * 108.44511 * 125.43898 * 9 8 6 11 11 C 1.52690 * 110.65061 * 54.00964 * 10 9 8 12 12 H 1.08996 * 109.87174 * 181.38496 * 11 10 9 13 13 O 1.42691 * 109.79420 * 62.26688 * 11 10 9 14 14 C 1.43077 * 113.86924 * 175.29658 * 13 11 10 15 15 C 1.52801 * 109.51751 * 61.51310 * 14 13 11 16 16 N 1.47171 * 108.93090 * 308.66152 * 15 14 13 17 17 C 1.36946 * 121.22446 * 230.90698 * 16 15 14 18 18 H 1.07998 * 119.99556 * 144.56177 * 17 16 15 19 19 C 1.38806 * 119.99724 * 324.84149 * 17 16 15 20 20 N 1.31621 * 120.00611 * 4.25749 * 19 17 16 21 21 Si 1.86804 * 119.99724 * 184.26164 * 19 17 16 22 22 H 1.48490 * 109.47175 * 89.99715 * 21 19 17 23 23 H 1.48501 * 109.46949 * 209.99947 * 21 19 17 24 24 H 1.48504 * 109.46950 * 329.99444 * 21 19 17 25 25 C 1.47589 * 117.55400 * 50.63139 * 16 15 14 26 26 H 1.08998 * 110.32080 * 187.96165 * 25 16 15 27 27 C 1.46794 * 120.72097 * 185.33727 * 8 6 5 28 28 C 1.52996 * 117.52019 * 209.64136 * 5 4 2 29 29 C 1.52992 * 117.50411 * 278.27634 * 5 4 2 30 30 H 1.09001 * 109.47125 * 304.45695 * 1 2 3 31 31 H 1.08991 * 109.47599 * 64.46764 * 1 2 3 32 32 H 1.08999 * 109.46817 * 184.46420 * 1 2 3 33 33 H 1.09001 * 109.46984 * 240.00251 * 2 1 3 34 34 H 1.08993 * 109.47064 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47193 * 300.00079 * 3 2 1 36 36 H 1.09007 * 109.46797 * 60.00251 * 3 2 1 37 37 H 1.09002 * 109.46835 * 305.76961 * 4 2 1 38 38 H 1.09002 * 109.46838 * 185.77613 * 4 2 1 39 39 H 1.08988 * 109.64543 * 245.12383 * 9 8 6 40 40 H 1.09004 * 109.64079 * 5.75871 * 9 8 6 41 41 H 1.08998 * 109.42001 * 174.62218 * 10 9 8 42 42 H 1.09004 * 109.41871 * 294.48663 * 10 9 8 43 43 H 1.08993 * 109.47787 * 181.64452 * 14 13 11 44 44 H 1.09009 * 109.47354 * 301.65673 * 14 13 11 45 45 H 1.09001 * 109.53177 * 188.79833 * 15 14 13 46 46 H 1.08998 * 109.43973 * 68.47150 * 15 14 13 47 47 H 0.96998 * 120.00480 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.52593 * 114.41483 * 27 8 6 49 49 H 1.09000 * 109.57633 * 354.25365 * 27 8 6 50 50 H 1.08995 * 117.50297 * 214.97508 * 28 5 4 51 51 H 1.09009 * 117.49763 * 0.02562 * 28 5 4 52 52 H 1.09009 * 117.49436 * 359.97438 * 29 5 4 53 53 H 1.08995 * 117.50674 * 144.97115 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6520 -2.1995 1.1787 6 6 2.2727 -2.9813 0.0497 7 8 1.5653 -3.5370 -0.7638 8 7 3.6138 -3.0630 -0.0560 9 6 4.4848 -2.4961 0.9834 10 6 5.4331 -3.5947 1.4731 11 6 6.1837 -4.2204 0.2999 12 1 6.8360 -5.0162 0.6595 13 8 6.9899 -3.2323 -0.3402 14 6 7.8148 -3.7488 -1.3890 15 6 6.9332 -4.3476 -2.4840 16 7 5.9809 -5.2868 -1.8699 17 6 5.8316 -6.5610 -2.3489 18 1 5.6342 -7.3746 -1.6666 19 6 5.9396 -6.8076 -3.7106 20 7 6.2681 -5.8331 -4.5320 21 14 5.6185 -8.5228 -4.3775 22 1 4.1799 -8.6598 -4.7189 23 1 6.4395 -8.7421 -5.5953 24 1 5.9811 -9.5300 -3.3481 25 6 5.1973 -4.8069 -0.7149 26 1 4.6394 -5.6297 -0.2679 27 6 4.2363 -3.7205 -1.2114 28 6 1.4184 -2.9329 2.5010 29 6 0.2316 -2.5781 1.6029 30 1 -0.3633 0.5814 0.8474 31 1 -0.3634 0.4429 -0.9272 32 1 -0.3633 -1.0246 0.0800 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.5948 -0.2706 2.1362 38 1 3.1251 -0.6326 1.3024 39 1 5.0633 -1.6717 0.5670 40 1 3.8778 -2.1386 1.8152 41 1 6.1495 -3.1684 2.1753 42 1 4.8574 -4.3747 1.9715 43 1 8.4185 -2.9431 -1.8067 44 1 8.4692 -4.5233 -0.9887 45 1 7.5563 -4.8776 -3.2044 46 1 6.3870 -3.5496 -2.9869 47 1 6.3432 -6.0053 -5.4836 48 1 4.7890 -2.9844 -1.7953 49 1 3.4644 -4.1737 -1.8334 50 1 1.7136 -3.9808 2.5544 51 1 1.5408 -2.3621 3.4216 52 1 -0.4263 -1.7740 1.9327 53 1 -0.2542 -3.3923 1.0652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177030884.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:34 Heat of formation + Delta-G solvation = -53.440023 kcal Electronic energy + Delta-G solvation = -32106.869052 eV Core-core repulsion = 28172.045511 eV Total energy + Delta-G solvation = -3934.823540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83349 -40.46833 -38.35303 -37.16740 -36.44959 -35.72004 -33.51510 -33.04030 -31.16178 -29.47135 -28.52358 -27.98845 -26.72062 -25.63543 -24.53096 -23.49261 -23.26287 -22.74315 -21.25376 -20.35070 -19.49825 -18.90272 -17.77018 -17.20798 -17.11359 -16.97476 -16.66422 -16.21127 -16.10331 -15.69243 -15.56334 -15.32248 -14.87623 -14.84525 -14.53447 -14.33438 -14.20453 -13.93096 -13.86553 -13.40287 -13.16533 -13.02494 -13.01216 -12.95466 -12.68484 -12.60407 -12.53912 -12.39836 -12.26411 -12.23428 -12.10966 -11.93915 -11.89737 -11.66690 -11.56705 -11.23941 -11.03186 -10.80677 -10.70103 -10.63888 -10.54207 -9.68932 -8.61741 -7.96843 -5.54489 1.38855 1.42702 1.49658 1.57645 1.95532 2.41071 2.79239 2.91201 3.19571 3.43472 3.49471 3.67484 3.86238 3.89167 3.91643 3.98819 4.11360 4.12972 4.19589 4.25061 4.26832 4.40192 4.45460 4.52723 4.59573 4.62879 4.75704 4.75904 4.81280 4.82353 4.84280 4.86333 4.89182 4.94755 4.96683 5.00892 5.04041 5.08526 5.09514 5.17365 5.24958 5.27310 5.29799 5.38339 5.49370 5.49791 5.50795 5.56453 5.63204 6.27940 6.37493 6.51480 7.04323 7.20708 7.66742 8.24817 9.06207 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.003712 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.080982 B = 7541.306970 C = 8099.398819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.141 4.141 4 C -0.071 4.071 5 C -0.162 4.162 6 C 0.539 3.461 7 O -0.600 6.600 8 N -0.599 5.599 9 C 0.112 3.888 10 C -0.116 4.116 11 C 0.087 3.913 12 H 0.050 0.950 13 O -0.383 6.383 14 C 0.050 3.950 15 C 0.144 3.856 16 N -0.605 5.605 17 C -0.273 4.273 18 H 0.063 0.937 19 C -0.035 4.035 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.291 1.291 23 H -0.287 1.287 24 H -0.265 1.265 25 C 0.133 3.867 26 H 0.057 0.943 27 C 0.128 3.872 28 C -0.135 4.135 29 C -0.148 4.148 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.023 0.977 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.044 0.956 45 H 0.075 0.925 46 H -0.004 1.004 47 H 0.253 0.747 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.087 0.913 51 H 0.144 0.856 52 H 0.130 0.870 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 13.870 19.319 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.198 4.198 4 C -0.108 4.108 5 C -0.165 4.165 6 C 0.330 3.670 7 O -0.481 6.481 8 N -0.331 5.331 9 C -0.010 4.010 10 C -0.154 4.154 11 C 0.027 3.973 12 H 0.068 0.932 13 O -0.302 6.302 14 C -0.028 4.028 15 C 0.019 3.981 16 N -0.329 5.329 17 C -0.402 4.402 18 H 0.081 0.919 19 C -0.232 4.232 20 N -0.572 5.572 21 Si 0.794 3.206 22 H -0.218 1.218 23 H -0.212 1.212 24 H -0.190 1.190 25 C 0.026 3.974 26 H 0.075 0.925 27 C 0.003 3.997 28 C -0.172 4.172 29 C -0.186 4.186 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.014 0.986 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.055 0.945 50 H 0.105 0.895 51 H 0.162 0.838 52 H 0.148 0.852 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.630 13.740 18.747 23.915 hybrid contribution -0.127 -1.711 -2.077 2.694 sum -5.757 12.029 16.670 21.347 Atomic orbital electron populations 1.21964 0.94734 1.02089 1.01872 1.21058 0.96689 0.96746 0.97235 1.21791 1.00971 0.94626 1.02431 1.21392 1.02195 0.88138 0.99046 1.21379 1.02316 0.97068 0.95724 1.20471 0.81476 0.79301 0.85800 1.90662 1.62378 1.49313 1.45754 1.48204 1.05585 1.56349 1.22916 1.22059 0.92372 0.95890 0.90640 1.21881 0.98573 0.99237 0.95687 1.22365 0.91717 0.90854 0.92319 0.93159 1.87748 1.57160 1.35026 1.50299 1.23117 0.92468 0.98702 0.88487 1.21281 0.91499 0.91310 0.94019 1.44378 1.42519 1.10664 1.35290 1.19385 1.45221 0.85241 0.90389 0.91903 1.26042 0.99516 1.01163 0.96460 1.70060 1.51359 1.32855 1.02925 0.85298 0.77338 0.80074 0.77920 1.21796 1.21249 1.18993 1.21725 0.91835 0.94156 0.89722 0.92475 1.21638 0.94913 0.95066 0.88104 1.23278 1.00225 1.00877 0.92849 1.23078 0.90058 1.03558 1.01871 0.90308 0.94064 0.92838 0.95795 0.92704 0.93365 0.90439 0.87322 0.89897 0.90818 0.85705 0.86760 0.89396 0.87510 0.93785 0.90725 0.98562 0.93757 0.93526 0.94452 0.89475 0.83783 0.85156 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.56 71.98 0.62 -2.23 16 2 C -0.10 -2.03 2.84 -10.79 -0.03 -2.06 16 3 C -0.14 -2.27 9.19 71.98 0.66 -1.61 16 4 C -0.07 -1.14 4.16 30.59 0.13 -1.01 16 5 C -0.16 -3.52 0.59 -52.93 -0.03 -3.55 16 6 C 0.54 18.58 6.26 87.66 0.55 19.12 16 7 O -0.60 -27.43 15.96 -3.05 -0.05 -27.48 16 8 N -0.60 -20.16 2.96 -818.94 -2.42 -22.58 16 9 C 0.11 2.61 4.92 86.34 0.42 3.03 16 10 C -0.12 -2.69 5.75 30.54 0.18 -2.52 16 11 C 0.09 2.96 2.82 30.56 0.09 3.05 16 12 H 0.05 1.77 8.11 -2.39 -0.02 1.75 16 13 O -0.38 -13.70 9.71 -148.98 -1.45 -15.15 16 14 C 0.05 1.91 6.96 71.92 0.50 2.41 16 15 C 0.14 7.09 4.88 86.19 0.42 7.51 16 16 N -0.60 -31.29 2.71 -673.19 -1.82 -33.12 16 17 C -0.27 -15.45 9.65 84.03 0.81 -14.64 16 18 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 19 C -0.04 -2.01 5.33 84.86 0.45 -1.56 16 20 N -0.93 -55.33 10.70 21.65 0.23 -55.09 16 21 Si 0.97 46.06 29.56 68.60 2.03 48.09 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C 0.13 5.81 2.96 44.95 0.13 5.95 16 26 H 0.06 2.61 7.99 -2.39 -0.02 2.59 16 27 C 0.13 5.68 5.67 86.43 0.49 6.17 16 28 C -0.14 -2.09 9.54 30.59 0.29 -1.79 16 29 C -0.15 -2.88 7.68 30.59 0.24 -2.65 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.17 5.24 -2.39 -0.01 1.16 16 33 H 0.02 0.70 7.50 -2.39 -0.02 0.68 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.11 1.04 8.10 -2.39 -0.02 1.02 16 38 H 0.08 1.25 5.58 -2.39 -0.01 1.24 16 39 H 0.07 1.77 8.00 -2.39 -0.02 1.75 16 40 H 0.13 1.99 4.80 -2.39 -0.01 1.98 16 41 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.04 1.65 8.13 -2.38 -0.02 1.63 16 45 H 0.07 4.10 6.13 -2.39 -0.01 4.08 16 46 H 0.00 -0.20 7.21 -2.39 -0.02 -0.22 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 48 H 0.05 2.22 6.69 -2.39 -0.02 2.21 16 49 H 0.04 1.99 7.00 -2.39 -0.02 1.98 16 50 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 52 H 0.13 1.77 7.31 -2.38 -0.02 1.76 16 53 H 0.07 1.89 7.88 -2.39 -0.02 1.87 16 Total: -1.00 -75.31 393.89 3.31 -72.00 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.88 Total: 19.71 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 5.91 Total: 13.63 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.02 Total: -110.79 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.49 Total: -42.63 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.31 3.31 -72.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177030884.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.557 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds