Wall clock time and date at job start Tue Mar 31 2020 19:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47193 * 2 1 4 4 C 1.52993 * 109.47171 * 120.00158 * 2 1 3 5 5 C 1.53004 * 109.47419 * 65.68976 * 4 2 1 6 6 C 1.50705 * 115.55878 * 40.80778 * 5 4 2 7 7 O 1.21285 * 119.99943 * 258.82840 * 6 5 4 8 8 N 1.34772 * 119.99698 * 78.82599 * 6 5 4 9 9 C 1.46841 * 120.41454 * 4.07180 * 8 6 5 10 10 C 1.52950 * 109.47413 * 232.22041 * 9 8 6 11 11 C 1.52783 * 108.88885 * 306.38857 * 10 9 8 12 12 H 1.08996 * 108.96385 * 302.94596 * 11 10 9 13 13 O 1.42602 * 111.11437 * 182.40351 * 11 10 9 14 14 C 1.43145 * 113.63703 * 176.38866 * 13 11 10 15 15 C 1.53196 * 109.73909 * 61.68451 * 14 13 11 16 16 N 1.47343 * 108.80251 * 308.79324 * 15 14 13 17 17 C 1.36941 * 121.30670 * 230.23546 * 16 15 14 18 18 H 1.07997 * 119.99713 * 147.10548 * 17 16 15 19 19 C 1.38813 * 119.99812 * 327.10231 * 17 16 15 20 20 N 1.31620 * 120.00100 * 353.08029 * 19 17 16 21 21 Si 1.86801 * 119.99634 * 173.07400 * 19 17 16 22 22 H 1.48499 * 109.47280 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46935 * 120.00557 * 21 19 17 24 24 H 1.48500 * 109.47053 * 240.00365 * 21 19 17 25 25 C 1.46877 * 117.39236 * 50.23940 * 16 15 14 26 26 H 1.09004 * 110.20520 * 67.96480 * 25 16 15 27 27 C 1.47133 * 120.40932 * 184.34589 * 8 6 5 28 28 C 1.52991 * 117.50328 * 186.49689 * 5 4 2 29 29 C 1.53000 * 60.03392 * 107.50176 * 28 5 4 30 30 H 1.08996 * 109.47191 * 175.79744 * 1 2 3 31 31 H 1.09001 * 109.47038 * 295.79523 * 1 2 3 32 32 H 1.08999 * 109.47581 * 55.78982 * 1 2 3 33 33 H 1.08999 * 109.46698 * 239.99934 * 2 1 3 34 34 H 1.09001 * 109.46659 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46605 * 300.00414 * 3 2 1 36 36 H 1.09003 * 109.46914 * 60.00162 * 3 2 1 37 37 H 1.08998 * 109.47584 * 305.69191 * 4 2 1 38 38 H 1.09000 * 109.47299 * 185.69083 * 4 2 1 39 39 H 1.08996 * 109.50460 * 352.20098 * 9 8 6 40 40 H 1.08996 * 109.51273 * 112.34038 * 9 8 6 41 41 H 1.09005 * 109.64806 * 186.51094 * 10 9 8 42 42 H 1.08998 * 109.44090 * 66.15183 * 10 9 8 43 43 H 1.08997 * 109.43065 * 181.77262 * 14 13 11 44 44 H 1.09003 * 109.42512 * 301.60906 * 14 13 11 45 45 H 1.08996 * 109.57951 * 68.59053 * 15 14 13 46 46 H 1.09004 * 109.57953 * 188.99808 * 15 14 13 47 47 H 0.97001 * 119.99500 * 179.97438 * 20 19 17 48 48 H 1.09009 * 109.72780 * 246.40947 * 27 8 6 49 49 H 1.09002 * 109.72668 * 7.08076 * 27 8 6 50 50 H 1.09002 * 117.49874 * 0.02562 * 28 5 4 51 51 H 1.08995 * 117.50412 * 215.00161 * 28 5 4 52 52 H 1.09003 * 117.49522 * 107.47468 * 29 28 5 53 53 H 1.09003 * 117.50037 * 252.47896 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6502 -2.1992 1.1797 6 6 1.7913 -2.8459 -0.1741 7 8 0.8126 -3.0160 -0.8700 8 7 3.0052 -3.2353 -0.6116 9 6 4.1823 -3.1156 0.2580 10 6 5.2891 -2.3635 -0.4827 11 6 5.5454 -3.0534 -1.8216 12 1 5.8022 -4.0968 -1.6390 13 8 6.6101 -2.4218 -2.5294 14 6 6.9509 -3.0755 -3.7564 15 6 5.7477 -3.0561 -4.7045 16 7 4.5685 -3.5698 -3.9859 17 6 3.7811 -4.5535 -4.5222 18 1 3.2991 -5.2719 -3.8756 19 6 3.6025 -4.6274 -5.8968 20 7 4.0756 -3.6762 -6.6739 21 14 2.6910 -6.0768 -6.6436 22 1 2.2625 -7.0017 -5.5638 23 1 1.4968 -5.5857 -7.3771 24 1 3.5887 -6.7948 -7.5838 25 6 4.2704 -2.9854 -2.6718 26 1 3.9592 -1.9467 -2.7835 27 6 3.1683 -3.7800 -1.9686 28 6 1.9364 -3.0638 2.4090 29 6 0.4975 -2.6691 2.0706 30 1 -0.3633 -1.0249 -0.0753 31 1 -0.3633 0.4472 0.9253 32 1 -0.3634 0.5778 -0.8498 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.5959 -0.2697 2.1363 38 1 3.1252 -0.6339 1.3016 39 1 3.9134 -2.5679 1.1612 40 1 4.5389 -4.1099 0.5269 41 1 6.2015 -2.3732 0.1137 42 1 4.9749 -1.3343 -0.6563 43 1 7.7885 -2.5571 -4.2230 44 1 7.2337 -4.1079 -3.5508 45 1 5.5585 -2.0344 -5.0337 46 1 5.9531 -3.6883 -5.5684 47 1 3.9511 -3.7280 -7.6345 48 1 3.4517 -4.8310 -1.9116 49 1 2.2334 -3.6798 -2.5201 50 1 2.4021 -2.5798 3.2674 51 1 2.2272 -4.1004 2.2386 52 1 -0.1582 -3.4458 1.6771 53 1 0.0167 -1.9256 2.7065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177030885.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:37 Heat of formation + Delta-G solvation = -57.240182 kcal Electronic energy + Delta-G solvation = -32295.762440 eV Core-core repulsion = 28360.774112 eV Total energy + Delta-G solvation = -3934.988328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.85425 -40.42256 -38.27155 -37.38467 -36.53980 -35.97315 -33.46098 -32.95951 -31.47599 -29.12092 -28.49085 -28.00102 -26.99101 -25.52498 -24.40506 -23.42605 -23.17096 -22.29148 -21.46246 -21.18327 -19.51272 -18.69710 -17.90746 -17.26282 -17.11011 -16.78067 -16.75509 -16.32686 -15.87441 -15.73747 -15.61285 -15.26088 -15.01813 -14.71700 -14.67352 -14.58429 -14.15423 -14.02039 -13.74439 -13.38914 -13.26772 -13.11317 -12.97288 -12.91982 -12.77719 -12.74711 -12.43792 -12.38868 -12.34418 -12.20127 -12.05037 -11.94849 -11.88965 -11.74570 -11.58584 -11.27415 -11.18655 -10.82399 -10.73943 -10.60114 -10.53613 -9.68366 -8.69911 -7.95623 -5.51338 1.38774 1.41611 1.50953 1.60121 1.90048 2.41628 2.75686 2.81834 3.21220 3.42372 3.45473 3.64398 3.82531 3.90232 3.92925 3.98013 4.07700 4.09955 4.16645 4.21778 4.25959 4.37633 4.41595 4.50103 4.53899 4.57045 4.66072 4.75891 4.78233 4.78667 4.80196 4.83560 4.85309 4.92597 4.96501 5.02164 5.03679 5.05716 5.10773 5.12572 5.17630 5.27573 5.29531 5.36445 5.44944 5.46189 5.50126 5.53723 5.58217 6.25071 6.33083 6.45104 7.02657 7.19942 7.67337 8.25271 9.10051 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.004206 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.524046 B = 6655.399546 C = 7390.707162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.141 4.141 4 C -0.060 4.060 5 C -0.163 4.163 6 C 0.545 3.455 7 O -0.587 6.587 8 N -0.607 5.607 9 C 0.110 3.890 10 C -0.116 4.116 11 C 0.082 3.918 12 H 0.055 0.945 13 O -0.391 6.391 14 C 0.052 3.948 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.069 0.931 19 C -0.042 4.042 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.282 1.282 25 C 0.138 3.862 26 H 0.001 0.999 27 C 0.141 3.859 28 C -0.140 4.140 29 C -0.148 4.148 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.050 0.950 45 H -0.005 1.005 46 H 0.069 0.931 47 H 0.252 0.748 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.142 0.858 51 H 0.095 0.905 52 H 0.074 0.926 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 5.227 23.456 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.198 4.198 4 C -0.098 4.098 5 C -0.166 4.166 6 C 0.335 3.665 7 O -0.466 6.466 8 N -0.339 5.339 9 C -0.011 4.011 10 C -0.154 4.154 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.310 6.310 14 C -0.026 4.026 15 C 0.023 3.977 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.087 0.913 19 C -0.238 4.238 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.208 1.208 25 C 0.031 3.969 26 H 0.018 0.982 27 C 0.018 3.982 28 C -0.176 4.176 29 C -0.186 4.186 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.146 0.854 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.068 0.932 45 H 0.013 0.987 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.160 0.840 51 H 0.114 0.886 52 H 0.093 0.907 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.191 5.285 22.983 23.613 hybrid contribution -0.932 -0.917 -2.255 2.606 sum 0.258 4.368 20.728 21.185 Atomic orbital electron populations 1.21797 0.95231 1.01304 1.01578 1.21079 0.96282 0.96948 0.97486 1.21787 1.01130 0.94699 1.02160 1.21220 1.01959 0.88262 0.98311 1.21391 1.09457 0.97391 0.88382 1.20372 0.81764 0.76321 0.88032 1.90671 1.39323 1.57228 1.59407 1.48291 1.08850 1.62500 1.14254 1.21998 0.83388 1.02333 0.93394 1.21828 1.00496 0.99643 0.93451 1.22493 0.86488 0.96477 0.92323 0.92710 1.87745 1.52930 1.55028 1.35301 1.23183 0.97392 0.97177 0.84847 1.21276 0.85775 0.96118 0.94499 1.44240 1.28338 1.42893 1.17554 1.19393 1.24417 1.04832 0.90502 0.91305 1.25979 1.00028 1.00077 0.97742 1.70123 1.50018 1.34053 1.03748 0.85238 0.77892 0.79180 0.78388 1.19125 1.22209 1.20782 1.21392 0.94615 0.93886 0.87020 0.98180 1.21206 0.98319 0.96601 0.82095 1.23340 0.98124 0.99772 0.96391 1.23129 0.91693 1.03336 1.00407 0.93796 0.90452 0.94609 0.95902 0.92283 0.94058 0.90325 0.87708 0.89570 0.85447 0.89415 0.86613 0.91586 0.87302 0.93206 0.98699 0.91303 0.93900 0.91469 0.92755 0.84018 0.88611 0.90703 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.94 71.98 0.64 -2.87 16 2 C -0.10 -2.38 2.58 -10.79 -0.03 -2.41 16 3 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 4 C -0.06 -1.01 4.67 30.59 0.14 -0.86 16 5 C -0.16 -3.33 0.19 -52.90 -0.01 -3.34 16 6 C 0.55 17.64 5.08 87.66 0.45 18.09 16 7 O -0.59 -25.21 15.31 -3.04 -0.05 -25.26 16 8 N -0.61 -19.13 2.99 -819.45 -2.45 -21.57 16 9 C 0.11 2.31 6.00 86.30 0.52 2.83 16 10 C -0.12 -2.81 5.81 30.51 0.18 -2.63 16 11 C 0.08 2.86 2.47 30.66 0.08 2.93 16 12 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 13 O -0.39 -14.83 10.49 -148.98 -1.56 -16.39 16 14 C 0.05 2.01 6.96 72.05 0.50 2.51 16 15 C 0.15 7.44 5.35 86.28 0.46 7.90 16 16 N -0.61 -31.59 3.03 -673.92 -2.04 -33.63 16 17 C -0.26 -14.69 8.76 84.03 0.74 -13.95 16 18 H 0.07 3.79 6.38 -2.91 -0.02 3.77 16 19 C -0.04 -2.42 5.14 84.86 0.44 -1.98 16 20 N -0.93 -56.44 11.08 21.65 0.24 -56.20 16 21 Si 0.97 46.30 29.56 68.60 2.03 48.32 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 C 0.14 6.14 3.02 45.05 0.14 6.28 16 26 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 27 C 0.14 5.88 4.54 86.25 0.39 6.28 16 28 C -0.14 -1.79 8.36 30.59 0.26 -1.53 16 29 C -0.15 -2.57 9.59 30.62 0.29 -2.28 16 30 H 0.04 1.31 6.16 -2.39 -0.01 1.30 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.02 0.76 6.94 -2.39 -0.02 0.75 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.15 7.96 -2.39 -0.02 1.13 16 38 H 0.09 1.19 7.29 -2.39 -0.02 1.17 16 39 H 0.13 1.81 4.42 -2.39 -0.01 1.79 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.11 3.59 8.14 -2.39 -0.02 3.58 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.07 3.76 6.38 -2.38 -0.02 3.74 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.07 2.79 7.34 -2.38 -0.02 2.77 16 49 H 0.05 2.74 6.85 -2.39 -0.02 2.73 16 50 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 53 H 0.13 1.54 8.09 -2.39 -0.02 1.52 16 Total: -1.00 -76.35 396.82 2.88 -73.46 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.87 Total: 18.39 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 5.84 Total: 12.88 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.25 Total: -111.41 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.61 Total: -41.65 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -76.35 2.88 -73.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177030885.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.225 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds