Wall clock time and date at job start Tue Mar 31 2020 19:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47120 * 2 1 4 4 C 1.52999 * 109.46948 * 120.00554 * 2 1 3 5 5 C 1.52997 * 109.47218 * 174.95109 * 4 2 1 6 6 C 1.50696 * 115.54861 * 297.40811 * 5 4 2 7 7 O 1.21284 * 120.00539 * 112.68084 * 6 5 4 8 8 N 1.34774 * 120.00092 * 292.67748 * 6 5 4 9 9 C 1.46841 * 120.41047 * 354.85920 * 8 6 5 10 10 C 1.53365 * 109.29055 * 127.70882 * 9 8 6 11 11 C 1.52880 * 108.77229 * 53.80998 * 10 9 8 12 12 H 1.09004 * 108.95392 * 56.97402 * 11 10 9 13 13 O 1.42596 * 111.10237 * 177.50113 * 11 10 9 14 14 C 1.43143 * 113.63824 * 183.62574 * 13 11 10 15 15 C 1.53190 * 109.74102 * 298.31302 * 14 13 11 16 16 N 1.47357 * 108.80126 * 51.21055 * 15 14 13 17 17 C 1.36930 * 121.30880 * 129.75840 * 16 15 14 18 18 H 1.08003 * 120.00174 * 211.53355 * 17 16 15 19 19 C 1.38814 * 120.00016 * 31.52951 * 17 16 15 20 20 N 1.31614 * 119.99851 * 8.57040 * 19 17 16 21 21 Si 1.86803 * 119.99954 * 188.56835 * 19 17 16 22 22 H 1.48503 * 109.47014 * 90.00630 * 21 19 17 23 23 H 1.48503 * 109.47106 * 210.00279 * 21 19 17 24 24 H 1.48497 * 109.47276 * 330.00142 * 21 19 17 25 25 C 1.46872 * 117.38212 * 309.75908 * 16 15 14 26 26 H 1.08995 * 110.20345 * 292.03112 * 25 16 15 27 27 C 1.47128 * 120.41664 * 174.83680 * 8 6 5 28 28 C 1.52999 * 117.50028 * 83.07035 * 5 4 2 29 29 C 1.53002 * 117.50349 * 151.73483 * 5 4 2 30 30 H 1.08999 * 109.46909 * 300.00083 * 1 2 3 31 31 H 1.09000 * 109.47146 * 59.99641 * 1 2 3 32 32 H 1.08994 * 109.47749 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46909 * 239.99917 * 2 1 3 34 34 H 1.09003 * 109.46633 * 185.79655 * 3 2 1 35 35 H 1.08999 * 109.47325 * 305.79802 * 3 2 1 36 36 H 1.09004 * 109.47201 * 65.80598 * 3 2 1 37 37 H 1.08999 * 109.47601 * 54.94898 * 4 2 1 38 38 H 1.09001 * 109.46917 * 294.94993 * 4 2 1 39 39 H 1.08996 * 109.50704 * 247.66661 * 9 8 6 40 40 H 1.09009 * 109.50485 * 7.75192 * 9 8 6 41 41 H 1.09004 * 109.57800 * 173.65412 * 10 9 8 42 42 H 1.09001 * 109.57720 * 294.04755 * 10 9 8 43 43 H 1.09001 * 109.42920 * 58.39982 * 14 13 11 44 44 H 1.09002 * 109.42671 * 178.28883 * 14 13 11 45 45 H 1.09011 * 109.58275 * 171.00022 * 15 14 13 46 46 H 1.09000 * 109.58674 * 291.40843 * 15 14 13 47 47 H 0.97002 * 119.99687 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.72793 * 352.91932 * 27 8 6 49 49 H 1.09000 * 109.73013 * 113.58744 * 27 8 6 50 50 H 1.09004 * 117.50339 * 215.00333 * 28 5 4 51 51 H 1.09006 * 117.50033 * 0.03183 * 28 5 4 52 52 H 1.08996 * 117.49290 * 359.97438 * 29 5 4 53 53 H 1.09000 * 117.49955 * 144.99649 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5646 -0.8323 1.1874 6 6 4.1114 -1.6413 0.0396 7 8 4.7446 -1.0960 -0.8395 8 7 3.8969 -2.9710 -0.0101 9 6 3.2302 -3.6584 1.1030 10 6 2.0567 -4.4827 0.5593 11 6 2.5722 -5.4011 -0.5489 12 1 3.3714 -6.0250 -0.1485 13 8 1.5298 -6.2339 -1.0520 14 6 1.9713 -7.1745 -2.0366 15 6 2.5335 -6.4277 -3.2502 16 7 3.5252 -5.4425 -2.7840 17 6 4.7725 -5.3687 -3.3443 18 1 5.6171 -5.0645 -2.7438 19 6 4.9513 -5.6847 -4.6841 20 7 3.9060 -5.8909 -5.4568 21 14 6.6756 -5.8175 -5.3903 22 1 7.1607 -7.2142 -5.2526 23 1 6.6526 -5.4408 -6.8266 24 1 7.5841 -4.9029 -4.6533 25 6 3.1233 -4.5430 -1.6948 26 1 2.3526 -3.8542 -2.0404 27 6 4.3275 -3.7517 -1.1805 28 6 4.3803 0.3761 1.6516 29 6 4.3235 -0.8868 2.5148 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1251 1.4441 -0.1038 35 1 1.5944 1.9854 -0.8335 36 1 1.7640 1.9254 0.9374 37 1 1.6047 -1.7196 1.2955 38 1 1.7523 -0.1580 2.1369 39 1 3.9400 -4.3196 1.6000 40 1 2.8585 -2.9218 1.8154 41 1 1.6285 -5.0825 1.3625 42 1 1.2967 -3.8139 0.1552 43 1 2.7480 -7.8088 -1.6094 44 1 1.1301 -7.7928 -2.3501 45 1 3.0124 -7.1366 -3.9257 46 1 1.7247 -5.9140 -3.7700 47 1 4.0310 -6.1114 -6.3931 48 1 4.6858 -3.0791 -1.9599 49 1 5.1232 -4.4385 -0.8922 50 1 5.3124 0.5858 1.1269 51 1 3.8306 1.2500 2.0015 52 1 3.7365 -0.8432 3.4322 53 1 5.2182 -1.5079 2.5579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177030886.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:40 Heat of formation + Delta-G solvation = -56.354082 kcal Electronic energy + Delta-G solvation = -32166.926970 eV Core-core repulsion = 28231.977067 eV Total energy + Delta-G solvation = -3934.949903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85387 -40.42849 -38.41801 -37.43685 -36.54499 -35.77295 -33.48464 -32.96613 -31.50419 -29.21148 -28.49487 -27.99815 -27.00352 -25.52698 -24.39014 -23.40676 -23.18050 -22.30203 -21.40648 -21.20194 -19.58133 -18.70849 -17.92954 -17.27450 -17.13794 -16.85673 -16.70180 -16.33494 -15.88601 -15.73486 -15.61159 -15.23939 -15.07158 -14.78599 -14.68614 -14.61138 -14.16384 -13.99587 -13.79512 -13.35484 -13.19332 -13.06241 -12.96114 -12.89582 -12.75665 -12.67888 -12.47798 -12.42479 -12.33915 -12.25232 -12.08522 -11.97938 -11.89012 -11.75131 -11.57853 -11.27924 -11.08875 -10.83242 -10.74498 -10.62550 -10.57160 -9.70840 -8.72182 -7.95314 -5.49780 1.39931 1.42029 1.50324 1.54510 1.88577 2.42058 2.75701 2.81158 3.21000 3.41389 3.45498 3.66894 3.81922 3.88470 3.91621 3.96784 4.05798 4.11002 4.15819 4.21333 4.24766 4.38036 4.40643 4.48418 4.52872 4.56011 4.64206 4.75456 4.77138 4.80691 4.81222 4.84180 4.84918 4.92731 4.94789 5.02284 5.04118 5.06618 5.09664 5.12328 5.17045 5.27605 5.28953 5.37188 5.45007 5.47984 5.49879 5.53342 5.57493 6.24251 6.32517 6.42229 7.02222 7.16068 7.67472 8.24652 9.10263 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012494 B = 0.004066 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.616969 B = 6884.384282 C = 7674.205460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.067 4.067 5 C -0.164 4.164 6 C 0.542 3.458 7 O -0.592 6.592 8 N -0.605 5.605 9 C 0.108 3.892 10 C -0.116 4.116 11 C 0.082 3.918 12 H 0.055 0.945 13 O -0.391 6.391 14 C 0.052 3.948 15 C 0.148 3.852 16 N -0.605 5.605 17 C -0.263 4.263 18 H 0.070 0.930 19 C -0.043 4.043 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.138 3.862 26 H 0.001 0.999 27 C 0.140 3.860 28 C -0.148 4.148 29 C -0.135 4.135 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.109 0.891 45 H 0.070 0.930 46 H -0.005 1.005 47 H 0.252 0.748 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.128 0.872 52 H 0.143 0.857 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 7.941 22.344 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.200 4.200 4 C -0.104 4.104 5 C -0.167 4.167 6 C 0.332 3.668 7 O -0.473 6.473 8 N -0.337 5.337 9 C -0.013 4.013 10 C -0.154 4.154 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.310 6.310 14 C -0.026 4.026 15 C 0.023 3.977 16 N -0.330 5.330 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.239 4.239 20 N -0.580 5.580 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.030 3.970 26 H 0.019 0.981 27 C 0.017 3.983 28 C -0.185 4.185 29 C -0.172 4.172 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.147 0.853 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.127 0.873 45 H 0.088 0.912 46 H 0.013 0.987 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.146 0.854 52 H 0.161 0.839 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.898 8.190 21.771 23.996 hybrid contribution 1.288 -0.284 -2.260 2.617 sum -4.610 7.906 19.511 21.551 Atomic orbital electron populations 1.21794 0.93801 1.01872 1.02420 1.21057 0.96551 0.96903 0.97293 1.21878 1.00708 0.95181 1.02245 1.21319 0.88203 1.01998 0.98860 1.21360 0.96704 1.03468 0.95163 1.20467 0.78130 0.81519 0.86670 1.90672 1.42915 1.71502 1.42171 1.48265 1.58858 1.07215 1.19405 1.22128 0.94034 0.97231 0.87908 1.21924 0.98376 0.97622 0.97513 1.22506 0.89998 0.91860 0.93396 0.92659 1.87744 1.35144 1.50455 1.57621 1.23182 0.99781 0.90694 0.88932 1.21296 0.90474 0.91815 0.94154 1.44254 1.12506 1.36133 1.40148 1.19379 0.85553 1.42402 0.91929 0.91266 1.25943 1.00590 1.01140 0.96224 1.70124 1.29801 1.52568 1.05490 0.85286 0.79961 0.78228 0.77114 1.20146 1.22040 1.19914 1.21392 0.94302 0.91375 0.89885 0.98135 1.21222 0.95920 0.93605 0.87551 1.23098 1.00682 0.92896 1.01803 1.23333 1.01399 0.99577 0.92870 0.90178 0.93609 0.92952 0.96149 0.93557 0.93883 0.90097 0.90234 0.87103 0.89319 0.85304 0.86530 0.91493 0.93192 0.87271 0.91194 0.98684 0.93899 0.92833 0.91357 0.90720 0.85398 0.83869 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.19 71.98 0.66 -1.93 16 2 C -0.10 -2.20 2.83 -10.79 -0.03 -2.23 16 3 C -0.14 -2.89 8.13 71.98 0.59 -2.31 16 4 C -0.07 -1.10 4.23 30.59 0.13 -0.97 16 5 C -0.16 -3.40 0.47 -52.93 -0.03 -3.43 16 6 C 0.54 17.92 6.11 87.66 0.54 18.46 16 7 O -0.59 -26.14 16.17 -3.04 -0.05 -26.19 16 8 N -0.61 -19.29 2.98 -818.66 -2.44 -21.73 16 9 C 0.11 2.28 5.70 86.44 0.49 2.77 16 10 C -0.12 -2.80 5.83 30.68 0.18 -2.62 16 11 C 0.08 2.86 2.47 30.69 0.08 2.94 16 12 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 13 O -0.39 -14.78 10.49 -148.98 -1.56 -16.34 16 14 C 0.05 2.01 6.96 72.05 0.50 2.51 16 15 C 0.15 7.41 5.37 86.28 0.46 7.87 16 16 N -0.61 -31.65 3.03 -673.89 -2.04 -33.69 16 17 C -0.26 -14.78 8.79 84.04 0.74 -14.05 16 18 H 0.07 3.82 6.35 -2.91 -0.02 3.80 16 19 C -0.04 -2.46 5.12 84.86 0.43 -2.03 16 20 N -0.93 -56.46 11.06 21.65 0.24 -56.22 16 21 Si 0.97 46.29 29.56 68.60 2.03 48.32 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 25 C 0.14 6.13 3.03 45.05 0.14 6.27 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 C 0.14 5.88 4.51 86.26 0.39 6.27 16 28 C -0.15 -2.66 7.82 30.62 0.24 -2.42 16 29 C -0.13 -1.82 9.29 30.62 0.28 -1.53 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.02 0.65 7.47 -2.39 -0.02 0.63 16 34 H 0.05 1.11 6.20 -2.39 -0.01 1.09 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.08 1.24 6.23 -2.39 -0.01 1.22 16 38 H 0.11 1.06 8.11 -2.39 -0.02 1.04 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.13 1.84 4.35 -2.38 -0.01 1.83 16 41 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 45 H 0.07 3.82 6.32 -2.38 -0.02 3.80 16 46 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 48 H 0.05 2.72 6.86 -2.39 -0.02 2.71 16 49 H 0.07 2.84 7.35 -2.39 -0.02 2.82 16 50 H 0.07 1.77 8.03 -2.39 -0.02 1.75 16 51 H 0.13 1.63 7.58 -2.38 -0.02 1.61 16 52 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.97 395.75 2.84 -74.13 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.88 Total: 18.15 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.79 Total: 13.58 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.24 Total: -111.64 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.61 Total: -42.53 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -76.97 2.84 -74.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177030886.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.772 kcal (2) G-P(sol) polarization free energy of solvation -76.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds