Wall clock time and date at job start Tue Mar 31 2020 19:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47067 * 2 1 4 4 C 1.53003 * 109.47064 * 184.37741 * 3 2 1 5 5 C 1.52997 * 109.47083 * 177.94111 * 4 3 2 6 6 C 1.50706 * 115.55269 * 301.39895 * 5 4 3 7 7 O 1.21281 * 119.99906 * 99.06778 * 6 5 4 8 8 N 1.34774 * 119.99870 * 279.06951 * 6 5 4 9 9 C 1.46878 * 120.30323 * 355.26718 * 8 6 5 10 10 C 1.53365 * 109.22919 * 232.11724 * 9 8 6 11 11 C 1.52788 * 108.92871 * 306.36838 * 10 9 8 12 12 H 1.08995 * 109.34538 * 302.77772 * 11 10 9 13 13 O 1.42600 * 111.11165 * 182.46034 * 11 10 9 14 14 C 1.43149 * 113.62969 * 176.39034 * 13 11 10 15 15 C 1.53193 * 109.74229 * 61.69270 * 14 13 11 16 16 N 1.47352 * 108.79769 * 308.78537 * 15 14 13 17 17 C 1.36935 * 121.30680 * 230.22048 * 16 15 14 18 18 H 1.07996 * 119.99946 * 154.96731 * 17 16 15 19 19 C 1.38817 * 120.00073 * 334.96638 * 17 16 15 20 20 N 1.31622 * 119.99680 * 343.89440 * 19 17 16 21 21 Si 1.86794 * 120.00069 * 163.89115 * 19 17 16 22 22 H 1.48499 * 109.47550 * 60.00154 * 21 19 17 23 23 H 1.48500 * 109.47002 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47404 * 299.99789 * 21 19 17 25 25 C 1.46877 * 117.38863 * 50.24273 * 16 15 14 26 26 H 1.08998 * 110.20137 * 67.97076 * 25 16 15 27 27 C 1.47123 * 120.41408 * 175.35664 * 8 6 5 28 28 C 1.53005 * 117.51857 * 87.09984 * 5 4 3 29 29 C 1.52997 * 60.00094 * 107.48035 * 28 5 4 30 30 H 1.08998 * 109.47030 * 184.70475 * 1 2 3 31 31 H 1.08996 * 109.46891 * 304.70360 * 1 2 3 32 32 H 1.09002 * 109.47112 * 64.70262 * 1 2 3 33 33 H 1.09005 * 109.47471 * 239.99962 * 2 1 3 34 34 H 1.09000 * 109.47465 * 119.99946 * 2 1 3 35 35 H 1.08992 * 109.47259 * 64.37467 * 3 2 1 36 36 H 1.09005 * 109.46832 * 304.37246 * 3 2 1 37 37 H 1.09001 * 109.47111 * 57.94165 * 4 3 2 38 38 H 1.08994 * 109.46968 * 297.94359 * 4 3 2 39 39 H 1.08995 * 109.41042 * 112.25950 * 9 8 6 40 40 H 1.08999 * 109.63233 * 352.11160 * 9 8 6 41 41 H 1.09003 * 109.58632 * 186.50254 * 10 9 8 42 42 H 1.09001 * 109.58344 * 66.23475 * 10 9 8 43 43 H 1.08996 * 109.42712 * 301.60750 * 14 13 11 44 44 H 1.09000 * 109.42355 * 181.77130 * 14 13 11 45 45 H 1.08994 * 109.58660 * 188.99159 * 15 14 13 46 46 H 1.09001 * 109.58645 * 68.57558 * 15 14 13 47 47 H 0.96999 * 119.99955 * 180.02562 * 20 19 17 48 48 H 1.09007 * 109.72454 * 7.10181 * 27 8 6 49 49 H 1.09000 * 109.76593 * 246.45749 * 27 8 6 50 50 H 1.09004 * 117.50103 * 214.97433 * 28 5 4 51 51 H 1.09004 * 117.49453 * 359.97438 * 28 5 4 52 52 H 1.08999 * 117.49910 * 252.50761 * 29 28 5 53 53 H 1.09002 * 117.49872 * 107.49154 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4439 -0.1101 5 6 4.0723 2.8868 -0.1618 6 6 3.5373 3.7231 -1.2956 7 8 2.6168 4.4888 -1.1026 8 7 4.0820 3.6202 -2.5241 9 6 5.2623 2.7739 -2.7430 10 6 6.3470 3.5936 -3.4527 11 6 5.7528 4.2130 -4.7167 12 1 5.3546 3.4227 -5.3531 13 8 6.7394 4.9412 -5.4445 14 6 6.2602 5.4766 -6.6826 15 6 5.1229 6.4668 -6.4125 16 7 4.1264 5.8193 -5.5413 17 6 2.7940 5.8261 -5.8569 18 1 2.1448 5.0517 -5.4759 19 6 2.2776 6.8285 -6.6667 20 7 2.9684 7.9298 -6.8721 21 14 0.6024 6.6141 -7.4649 22 1 -0.4290 6.4372 -6.4113 23 1 0.2823 7.8172 -8.2745 24 1 0.6223 5.4175 -8.3440 25 6 4.6183 5.1666 -4.3209 26 1 4.9938 5.9125 -3.6204 27 6 3.5028 4.3551 -3.6595 28 6 4.3391 3.5905 1.1703 29 6 5.5103 3.1476 0.2911 30 1 -0.3633 -1.0242 0.0843 31 1 -0.3633 0.5851 0.8448 32 1 -0.3633 0.4391 -0.9291 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.7421 1.9332 0.9265 36 1 1.6140 1.9785 -0.8483 37 1 3.8652 0.9211 -1.0185 38 1 3.9933 0.9398 0.7567 39 1 4.9865 1.9211 -3.3632 40 1 5.6421 2.4201 -1.7846 41 1 7.1794 2.9432 -3.7212 42 1 6.6999 4.3838 -2.7900 43 1 5.8927 4.6650 -7.3105 44 1 7.0740 5.9901 -7.1946 45 1 4.6546 6.7512 -7.3547 46 1 5.5200 7.3530 -5.9174 47 1 2.6075 8.6304 -7.4376 48 1 2.7212 5.0262 -3.3032 49 1 3.0836 3.6514 -4.3788 50 1 4.1277 4.6584 1.2267 51 1 4.1535 3.0256 2.0839 52 1 6.0955 2.2913 0.6263 53 1 6.0694 3.9240 -0.2310 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177096005.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:50 Heat of formation + Delta-G solvation = -58.305404 kcal Electronic energy + Delta-G solvation = -31535.968491 eV Core-core repulsion = 27600.933972 eV Total energy + Delta-G solvation = -3935.034519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.81540 -40.39617 -38.17588 -37.41381 -36.56793 -35.84161 -33.47921 -32.96810 -31.46130 -30.85569 -29.05259 -27.18747 -25.57771 -25.47751 -24.14031 -23.46871 -23.25223 -22.19692 -21.86697 -21.34515 -19.56017 -18.72364 -17.95056 -17.29530 -17.11047 -16.81368 -16.67148 -16.37881 -16.16334 -15.76279 -15.60994 -15.45709 -14.83865 -14.77332 -14.67923 -14.60618 -14.23795 -14.00373 -13.86791 -13.69415 -13.36874 -13.07923 -12.99019 -12.85905 -12.75637 -12.53821 -12.45224 -12.40360 -12.27254 -12.19427 -12.08461 -11.96079 -11.91618 -11.74671 -11.45994 -11.29068 -11.20913 -10.90084 -10.79681 -10.58893 -10.52606 -9.72289 -8.80864 -7.94784 -5.41842 1.41903 1.43354 1.50190 1.55926 1.84750 2.43627 2.69449 2.80310 3.19398 3.40419 3.43451 3.62254 3.80770 3.84894 3.93477 4.02583 4.05432 4.13021 4.14591 4.20557 4.22448 4.36424 4.38914 4.47609 4.51426 4.55738 4.57857 4.66663 4.73326 4.76168 4.80342 4.83519 4.84848 4.92129 4.96597 4.99987 5.04593 5.07806 5.11443 5.13144 5.16961 5.23219 5.29209 5.29844 5.42084 5.43148 5.51489 5.52303 5.58002 6.21219 6.31005 6.40803 7.00711 7.14852 7.68763 8.22759 9.11103 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.003917 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.265133 B = 7146.777890 C = 8709.513827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.119 4.119 4 C -0.064 4.064 5 C -0.162 4.162 6 C 0.541 3.459 7 O -0.592 6.592 8 N -0.605 5.605 9 C 0.107 3.893 10 C -0.115 4.115 11 C 0.082 3.918 12 H 0.056 0.944 13 O -0.392 6.392 14 C 0.052 3.948 15 C 0.144 3.856 16 N -0.606 5.606 17 C -0.263 4.263 18 H 0.073 0.927 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.135 3.865 26 H 0.001 0.999 27 C 0.138 3.862 28 C -0.152 4.152 29 C -0.142 4.142 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.110 0.890 45 H 0.075 0.925 46 H -0.006 1.006 47 H 0.252 0.748 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.129 0.871 52 H 0.147 0.853 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -19.693 13.714 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.157 4.157 4 C -0.102 4.102 5 C -0.165 4.165 6 C 0.331 3.669 7 O -0.472 6.472 8 N -0.337 5.337 9 C -0.014 4.014 10 C -0.154 4.154 11 C 0.023 3.977 12 H 0.074 0.926 13 O -0.311 6.311 14 C -0.025 4.025 15 C 0.019 3.981 16 N -0.331 5.331 17 C -0.392 4.392 18 H 0.091 0.909 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.794 3.206 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.196 1.196 25 C 0.028 3.972 26 H 0.018 0.982 27 C 0.015 3.985 28 C -0.189 4.189 29 C -0.179 4.179 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.012 0.988 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.148 0.852 52 H 0.165 0.835 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.673 -19.135 13.763 24.787 hybrid contribution -1.749 1.491 -1.050 2.527 sum 5.924 -17.644 12.713 22.539 Atomic orbital electron populations 1.21807 0.96600 1.01991 1.01055 1.21494 0.95422 0.95515 1.02965 1.21558 0.96071 0.97318 1.00763 1.21129 0.94681 0.89729 1.04620 1.21421 1.02656 0.97878 0.94568 1.20473 0.81629 0.81395 0.83387 1.90679 1.32139 1.40678 1.83683 1.48305 1.31016 1.46796 1.07594 1.22157 0.83199 0.92351 1.03651 1.21889 0.99210 1.00348 0.93935 1.22507 0.88604 0.92437 0.94188 0.92554 1.87744 1.36909 1.71800 1.34611 1.23174 0.97514 0.96548 0.85293 1.21364 0.88790 0.92184 0.95767 1.44357 1.03383 1.64816 1.20533 1.19424 0.85514 1.06291 1.28004 0.90905 1.25776 1.01408 0.94382 1.02773 1.70169 1.40191 1.06434 1.41342 0.85355 0.79735 0.77122 0.78356 1.20881 1.21652 1.19598 1.21413 0.94273 0.93384 0.88130 0.98171 1.21253 0.95347 0.94726 0.87174 1.23088 1.01890 1.00277 0.93680 1.23354 0.88719 1.04640 1.01160 0.91446 0.93083 0.94396 0.91552 0.90010 0.92510 0.95708 0.90022 0.87374 0.89277 0.85162 0.86480 0.91615 0.93151 0.87233 0.90670 0.98802 0.93904 0.92719 0.91067 0.91117 0.85248 0.83532 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.12 -1.77 5.93 30.59 0.18 -1.59 16 3 C -0.12 -2.40 5.05 30.60 0.15 -2.25 16 4 C -0.06 -0.96 5.12 30.59 0.16 -0.81 16 5 C -0.16 -3.34 0.89 -52.92 -0.05 -3.39 16 6 C 0.54 17.82 5.92 87.66 0.52 18.34 16 7 O -0.59 -26.20 16.41 -3.03 -0.05 -26.24 16 8 N -0.60 -19.11 2.98 -818.58 -2.44 -21.56 16 9 C 0.11 2.23 6.14 86.43 0.53 2.77 16 10 C -0.12 -2.78 5.82 30.65 0.18 -2.60 16 11 C 0.08 2.87 2.48 30.66 0.08 2.94 16 12 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 13 O -0.39 -14.84 10.49 -148.98 -1.56 -16.40 16 14 C 0.05 2.03 6.95 72.05 0.50 2.53 16 15 C 0.14 7.24 5.45 86.28 0.47 7.71 16 16 N -0.61 -31.73 3.05 -673.90 -2.06 -33.78 16 17 C -0.26 -14.79 8.93 84.04 0.75 -14.04 16 18 H 0.07 4.00 6.22 -2.91 -0.02 3.98 16 19 C -0.05 -2.74 4.99 84.86 0.42 -2.32 16 20 N -0.94 -56.48 11.02 21.65 0.24 -56.24 16 21 Si 0.97 46.07 29.58 68.60 2.03 48.10 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 C 0.14 6.03 3.02 45.05 0.14 6.16 16 26 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 27 C 0.14 5.76 4.48 86.26 0.39 6.14 16 28 C -0.15 -2.84 9.87 30.59 0.30 -2.53 16 29 C -0.14 -2.00 7.81 30.59 0.24 -1.76 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.02 0.69 7.45 -2.38 -0.02 0.67 16 37 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 38 H 0.11 0.93 8.11 -2.39 -0.02 0.91 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.13 1.82 4.71 -2.39 -0.01 1.80 16 41 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 45 H 0.08 4.12 6.06 -2.39 -0.01 4.10 16 46 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.05 2.76 6.77 -2.38 -0.02 2.74 16 49 H 0.07 2.92 7.39 -2.39 -0.02 2.91 16 50 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 Total: -1.00 -77.12 403.27 2.70 -74.42 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.87 Total: 18.38 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.67 Total: 13.33 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.26 Total: -111.58 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.61 Total: -42.65 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.12 2.70 -74.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177096005.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.115 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds