Wall clock time and date at job start Tue Mar 31 2020 19:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47105 * 2 1 4 4 C 1.52999 * 109.47512 * 184.55286 * 3 2 1 5 5 C 1.52997 * 109.47248 * 185.05223 * 4 3 2 6 6 C 1.50698 * 115.54996 * 302.55209 * 5 4 3 7 7 O 1.21288 * 119.99942 * 101.32330 * 6 5 4 8 8 N 1.34777 * 120.00179 * 281.32216 * 6 5 4 9 9 C 1.46991 * 120.71630 * 355.41696 * 8 6 5 10 10 C 1.53162 * 108.43760 * 234.54542 * 9 8 6 11 11 C 1.52511 * 109.79526 * 305.47007 * 10 9 8 12 12 H 1.08999 * 108.40156 * 179.33986 * 11 10 9 13 13 O 1.42690 * 110.61803 * 298.71397 * 11 10 9 14 14 C 1.43077 * 113.86929 * 185.35335 * 13 11 10 15 15 C 1.53685 * 109.36924 * 298.20871 * 14 13 11 16 16 N 1.47177 * 108.45494 * 51.83545 * 15 14 13 17 17 C 1.36937 * 121.22338 * 128.99707 * 16 15 14 18 18 H 1.07994 * 119.99801 * 205.89376 * 17 16 15 19 19 C 1.38809 * 119.99802 * 25.61787 * 17 16 15 20 20 N 1.31616 * 120.00028 * 17.76361 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 197.76354 * 19 17 16 22 22 H 1.48504 * 109.47060 * 94.98042 * 21 19 17 23 23 H 1.48500 * 109.47246 * 214.98287 * 21 19 17 24 24 H 1.48502 * 109.47257 * 334.98327 * 21 19 17 25 25 C 1.47594 * 117.54938 * 308.73440 * 16 15 14 26 26 H 1.09005 * 110.31229 * 172.56474 * 25 16 15 27 27 C 1.47232 * 119.88454 * 176.04579 * 8 6 5 28 28 C 1.52998 * 117.51755 * 88.24867 * 5 4 3 29 29 C 1.52995 * 117.49879 * 156.87869 * 5 4 3 30 30 H 1.08994 * 109.47397 * 64.75680 * 1 2 3 31 31 H 1.08999 * 109.46839 * 184.75565 * 1 2 3 32 32 H 1.09005 * 109.47443 * 304.75404 * 1 2 3 33 33 H 1.09000 * 109.47321 * 240.00331 * 2 1 3 34 34 H 1.09004 * 109.47413 * 119.99605 * 2 1 3 35 35 H 1.09003 * 109.46735 * 64.54975 * 3 2 1 36 36 H 1.09002 * 109.46929 * 304.55900 * 3 2 1 37 37 H 1.08998 * 109.46890 * 65.05298 * 4 3 2 38 38 H 1.09004 * 109.46648 * 305.05703 * 4 3 2 39 39 H 1.09005 * 109.63556 * 114.86503 * 9 8 6 40 40 H 1.08993 * 109.64189 * 354.23039 * 9 8 6 41 41 H 1.08998 * 109.41223 * 185.37406 * 10 9 8 42 42 H 1.09000 * 109.36074 * 65.53849 * 10 9 8 43 43 H 1.09008 * 109.47492 * 58.34052 * 14 13 11 44 44 H 1.08993 * 109.47768 * 178.34771 * 14 13 11 45 45 H 1.08994 * 109.76477 * 292.12507 * 15 14 13 46 46 H 1.09001 * 109.67489 * 171.49681 * 15 14 13 47 47 H 0.97001 * 119.99844 * 180.02562 * 20 19 17 48 48 H 1.08999 * 110.50725 * 6.37683 * 27 8 6 49 49 H 1.08995 * 108.75697 * 246.06352 * 27 8 6 50 50 H 1.09002 * 117.50480 * 214.96994 * 28 5 4 51 51 H 1.09007 * 117.50090 * 359.97438 * 28 5 4 52 52 H 1.09003 * 117.49989 * 359.97438 * 29 5 4 53 53 H 1.09005 * 117.49901 * 144.99755 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5657 1.4442 -0.1145 5 6 4.0851 2.8777 0.0120 6 6 3.5345 3.8593 -0.9901 7 8 2.6538 4.6276 -0.6656 8 7 4.0206 3.8836 -2.2469 9 6 5.1547 3.0305 -2.6299 10 6 6.2473 3.9188 -3.2324 11 6 5.6692 4.7438 -4.3774 12 1 6.4611 5.3747 -4.7810 13 8 5.1818 3.8927 -5.4138 14 6 4.7335 4.5951 -6.5769 15 6 3.5591 5.5111 -6.1980 16 7 3.9624 6.3333 -5.0459 17 6 3.8114 7.6943 -5.0575 18 1 4.4516 8.3138 -4.4470 19 6 2.8394 8.2779 -5.8583 20 7 1.8490 7.5493 -6.3279 21 14 2.9367 10.0976 -6.2693 22 1 3.6166 10.2738 -7.5777 23 1 1.5653 10.6623 -6.3440 24 1 3.7058 10.8032 -5.2129 25 6 4.5301 5.6364 -3.8752 26 1 4.9068 6.3586 -3.1509 27 6 3.4222 4.7825 -3.2477 28 6 4.3872 3.3986 1.4185 29 6 5.5349 3.0666 0.4628 30 1 -0.3634 0.4382 -0.9295 31 1 -0.3633 -1.0241 0.0852 32 1 -0.3634 0.5858 0.8444 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.7447 1.9323 0.9280 36 1 1.6114 1.9794 -0.8463 37 1 3.8578 1.0359 -1.0820 38 1 3.9903 0.8322 0.6813 39 1 4.8291 2.2981 -3.3686 40 1 5.5426 2.5194 -1.7488 41 1 7.0562 3.2929 -3.6092 42 1 6.6344 4.5873 -2.4634 43 1 5.5512 5.1946 -6.9771 44 1 4.4056 3.8788 -7.3302 45 1 2.6920 4.9073 -5.9305 46 1 3.3116 6.1577 -7.0399 47 1 1.1699 7.9570 -6.8878 48 1 2.6807 5.4321 -2.7827 49 1 2.9457 4.1791 -4.0203 50 1 4.1878 4.4513 1.6191 51 1 4.2155 2.7201 2.2542 52 1 6.1186 2.1695 0.6696 53 1 6.0905 3.9009 0.0344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177096011.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:57 Heat of formation + Delta-G solvation = -58.593502 kcal Electronic energy + Delta-G solvation = -31673.769172 eV Core-core repulsion = 27738.722160 eV Total energy + Delta-G solvation = -3935.047012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.77187 -40.39931 -38.07984 -37.11274 -36.47299 -35.84578 -33.49620 -33.02968 -31.11466 -30.85513 -29.32517 -26.89758 -25.70124 -25.34219 -24.50026 -23.43467 -23.24533 -22.70375 -21.89982 -20.33862 -19.42704 -18.88299 -17.75762 -17.24180 -17.11183 -16.97788 -16.63381 -16.29845 -16.19728 -15.87380 -15.51928 -15.47024 -14.88309 -14.74211 -14.58738 -14.36742 -14.19715 -13.97129 -13.91926 -13.63642 -13.40893 -13.12332 -13.00782 -12.90889 -12.66222 -12.55163 -12.43202 -12.30960 -12.29347 -12.20216 -12.10708 -11.95712 -11.88734 -11.67807 -11.48315 -11.25264 -11.19091 -10.88215 -10.79903 -10.58681 -10.49602 -9.69317 -8.75461 -7.96137 -5.43106 1.41586 1.42328 1.52195 1.60928 1.94058 2.43546 2.73703 2.87433 3.18022 3.40982 3.47494 3.63902 3.85170 3.85702 3.98641 4.02829 4.10466 4.13187 4.18101 4.21701 4.24994 4.35174 4.43229 4.50167 4.54759 4.55554 4.61575 4.73207 4.76440 4.81072 4.83238 4.84503 4.88328 4.91599 4.95619 5.00689 5.03558 5.06274 5.11892 5.14773 5.22119 5.25237 5.27367 5.29494 5.41140 5.46813 5.49131 5.54550 5.57245 6.22678 6.33403 6.50807 7.00588 7.20614 7.67707 8.22016 9.08750 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.003431 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.982153 B = 8158.867220 C = 8485.836588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.118 4.118 4 C -0.065 4.065 5 C -0.165 4.165 6 C 0.538 3.462 7 O -0.599 6.599 8 N -0.600 5.600 9 C 0.112 3.888 10 C -0.116 4.116 11 C 0.087 3.913 12 H 0.051 0.949 13 O -0.381 6.381 14 C 0.053 3.947 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.268 4.268 18 H 0.066 0.934 19 C -0.045 4.045 20 N -0.931 5.931 21 Si 0.970 3.030 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.132 3.868 26 H 0.058 0.942 27 C 0.126 3.874 28 C -0.151 4.151 29 C -0.138 4.138 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.108 0.892 45 H -0.001 1.001 46 H 0.067 0.933 47 H 0.252 0.748 48 H 0.039 0.961 49 H 0.045 0.955 50 H 0.072 0.928 51 H 0.128 0.872 52 H 0.145 0.855 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.104 -18.170 11.891 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.156 4.156 4 C -0.102 4.102 5 C -0.168 4.168 6 C 0.328 3.672 7 O -0.480 6.480 8 N -0.332 5.332 9 C -0.009 4.009 10 C -0.154 4.154 11 C 0.028 3.972 12 H 0.069 0.931 13 O -0.300 6.300 14 C -0.025 4.025 15 C 0.019 3.981 16 N -0.326 5.326 17 C -0.398 4.398 18 H 0.083 0.917 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.798 3.202 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.195 1.195 25 C 0.025 3.975 26 H 0.076 0.924 27 C 0.001 3.999 28 C -0.189 4.189 29 C -0.175 4.175 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.017 0.983 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.091 0.909 51 H 0.146 0.854 52 H 0.163 0.837 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.518 -17.894 11.936 23.943 hybrid contribution -1.304 2.196 -0.817 2.681 sum 9.214 -15.698 11.119 21.330 Atomic orbital electron populations 1.21808 0.96565 1.02069 1.01004 1.21494 0.95459 0.95355 1.03027 1.21548 0.96200 0.97409 1.00461 1.21126 0.94519 0.90354 1.04233 1.21402 1.02502 0.96501 0.96438 1.20483 0.81233 0.82990 0.82499 1.90666 1.34049 1.43887 1.79368 1.48410 1.34222 1.41015 1.09522 1.22000 0.84766 0.92330 1.01815 1.21882 0.98497 0.99437 0.95628 1.22227 0.93739 0.91816 0.89426 0.93074 1.87732 1.82689 1.33487 1.26114 1.23236 0.96191 0.95655 0.87444 1.21396 0.93250 0.92308 0.91105 1.44584 1.73536 1.02762 1.11740 1.19474 1.12343 0.82671 1.25286 0.91661 1.25792 0.94461 1.02005 1.01864 1.70188 1.12393 1.37014 1.38066 0.85214 0.76557 0.80009 0.78440 1.20528 1.22233 1.19536 1.21733 0.93360 0.93155 0.89287 0.92396 1.21763 0.96747 0.91948 0.89467 1.23079 1.02009 1.01815 0.91971 1.23345 0.88528 1.05114 1.00484 0.94447 0.91254 0.93164 0.91487 0.89891 0.92735 0.96082 0.90448 0.87302 0.90920 0.85798 0.86645 0.89172 0.93403 0.87359 0.98289 0.91433 0.93885 0.94221 0.93671 0.90932 0.85413 0.83749 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.91 71.98 0.71 -2.19 16 2 C -0.12 -1.95 5.93 30.59 0.18 -1.76 16 3 C -0.12 -2.64 4.91 30.60 0.15 -2.49 16 4 C -0.07 -1.10 5.05 30.59 0.15 -0.95 16 5 C -0.17 -3.61 0.85 -52.93 -0.04 -3.66 16 6 C 0.54 18.56 6.02 87.66 0.53 19.09 16 7 O -0.60 -27.52 16.36 -3.06 -0.05 -27.57 16 8 N -0.60 -20.15 2.98 -817.79 -2.44 -22.59 16 9 C 0.11 2.59 5.81 86.34 0.50 3.09 16 10 C -0.12 -2.64 5.82 30.49 0.18 -2.46 16 11 C 0.09 2.93 2.72 30.49 0.08 3.01 16 12 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 13 O -0.38 -13.43 9.68 -148.98 -1.44 -14.87 16 14 C 0.05 1.97 6.99 72.21 0.51 2.47 16 15 C 0.14 7.07 5.00 86.48 0.43 7.50 16 16 N -0.60 -31.02 2.70 -671.50 -1.81 -32.83 16 17 C -0.27 -15.16 9.69 84.03 0.81 -14.35 16 18 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 19 C -0.05 -2.58 4.94 84.86 0.42 -2.16 16 20 N -0.93 -56.03 11.16 21.65 0.24 -55.79 16 21 Si 0.97 45.83 29.59 68.60 2.03 47.85 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.13 5.73 2.95 44.95 0.13 5.86 16 26 H 0.06 2.62 7.99 -2.38 -0.02 2.60 16 27 C 0.13 5.59 5.67 86.34 0.49 6.07 16 28 C -0.15 -2.88 9.84 30.59 0.30 -2.58 16 29 C -0.14 -1.97 8.07 30.59 0.25 -1.72 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.03 8.14 -2.38 -0.02 1.02 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.02 0.63 7.68 -2.39 -0.02 0.61 16 37 H 0.08 1.23 7.72 -2.39 -0.02 1.21 16 38 H 0.11 1.11 8.11 -2.39 -0.02 1.09 16 39 H 0.07 1.75 7.94 -2.38 -0.02 1.73 16 40 H 0.12 1.95 4.75 -2.39 -0.01 1.93 16 41 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 45 H 0.00 -0.05 7.17 -2.39 -0.02 -0.07 16 46 H 0.07 3.66 6.11 -2.39 -0.01 3.65 16 47 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.04 2.13 7.01 -2.39 -0.02 2.11 16 49 H 0.04 2.16 6.66 -2.39 -0.02 2.14 16 50 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 52 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -76.17 403.41 3.18 -72.99 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.87 Total: 20.02 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.79 Total: 12.79 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -4.01 Total: -111.21 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.49 Total: -42.44 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.17 3.18 -72.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177096011.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.397 kcal (2) G-P(sol) polarization free energy of solvation -76.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds