Wall clock time and date at job start Tue Mar 31 2020 20:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47268 * 2 1 4 4 C 1.32997 * 120.00280 * 122.65910 * 3 2 1 5 5 C 1.50700 * 120.00401 * 185.87220 * 4 3 2 6 6 C 1.47103 * 119.99679 * 5.87421 * 4 3 2 7 7 O 1.21614 * 120.00146 * 261.01133 * 6 4 3 8 8 N 1.34783 * 120.00038 * 81.01312 * 6 4 3 9 9 C 1.48188 * 127.79650 * 354.95277 * 8 6 4 10 10 C 1.54517 * 104.63746 * 219.25523 * 9 8 6 11 11 H 1.09000 * 110.38111 * 95.15971 * 10 9 8 12 12 C 1.53005 * 110.37978 * 217.40446 * 10 9 8 13 13 N 1.46499 * 109.46683 * 293.54507 * 12 10 9 14 14 C 1.36938 * 119.99594 * 179.72517 * 13 12 10 15 15 H 1.07994 * 120.00060 * 0.27499 * 14 13 12 16 16 C 1.38812 * 119.99857 * 180.27264 * 14 13 12 17 17 N 1.31623 * 119.99976 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00007 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47429 * 60.00253 * 18 16 14 20 20 H 1.48502 * 109.47349 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47241 * 299.99965 * 18 16 14 22 22 C 1.53784 * 104.77877 * 336.22848 * 10 9 8 23 23 C 1.48257 * 127.80006 * 174.93322 * 8 6 4 24 24 C 1.52585 * 110.28357 * 241.19067 * 22 10 9 25 25 C 1.53202 * 109.20094 * 182.30436 * 24 22 10 26 26 O 1.42915 * 109.34198 * 56.67071 * 25 24 22 27 27 C 1.42914 * 114.21703 * 298.38610 * 26 25 24 28 28 C 1.52588 * 110.26719 * 119.02827 * 22 10 9 29 29 H 1.09005 * 109.46949 * 59.99673 * 1 2 3 30 30 H 1.08995 * 109.47479 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47476 * 300.00440 * 1 2 3 32 32 H 1.08999 * 109.47025 * 239.99815 * 2 1 3 33 33 H 1.08998 * 109.46584 * 120.00230 * 2 1 3 34 34 H 1.07997 * 120.00132 * 302.66068 * 3 2 1 35 35 H 1.08999 * 109.46770 * 265.06220 * 5 4 3 36 36 H 1.08997 * 109.46660 * 25.05908 * 5 4 3 37 37 H 1.08996 * 109.46827 * 145.06054 * 5 4 3 38 38 H 1.09003 * 110.40540 * 100.46552 * 9 8 6 39 39 H 1.09004 * 110.40861 * 338.04473 * 9 8 6 40 40 H 1.09003 * 109.46798 * 173.54785 * 12 10 9 41 41 H 1.08996 * 109.46801 * 53.54297 * 12 10 9 42 42 H 0.97003 * 120.00290 * 359.97438 * 13 12 10 43 43 H 0.97004 * 119.99887 * 179.97438 * 17 16 14 44 44 H 1.09007 * 110.42395 * 259.63979 * 23 8 6 45 45 H 1.08995 * 110.42961 * 22.00340 * 23 8 6 46 46 H 1.09000 * 109.51480 * 302.22164 * 24 22 10 47 47 H 1.08997 * 109.51589 * 62.38569 * 24 22 10 48 48 H 1.09002 * 109.49686 * 296.70787 * 25 24 22 49 49 H 1.08999 * 109.51630 * 176.63693 * 25 24 22 50 50 H 1.08999 * 109.49737 * 301.66470 * 27 26 25 51 51 H 1.08997 * 109.51873 * 181.59378 * 27 26 25 52 52 H 1.09006 * 109.51731 * 297.63383 * 28 22 10 53 53 H 1.08999 * 109.51629 * 57.79710 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8400 1.8405 0.9697 5 6 3.2362 3.2926 1.0446 6 6 3.3467 0.8874 1.9690 7 8 2.8138 0.8088 3.0594 8 7 4.4016 0.1011 1.6763 9 6 5.1117 -0.0209 0.3813 10 6 5.4263 -1.5279 0.2491 11 1 4.6553 -2.0266 -0.3382 12 6 6.7995 -1.7311 -0.3943 13 7 6.7632 -1.2609 -1.7814 14 6 7.8871 -1.3376 -2.5599 15 1 8.7990 -1.7487 -2.1528 16 6 7.8543 -0.8869 -3.8724 17 7 6.7430 -0.3855 -4.3685 18 14 9.3872 -0.9921 -4.9347 19 1 9.8112 -2.4104 -5.0530 20 1 9.0920 -0.4490 -6.2850 21 1 10.4773 -0.2000 -4.3106 22 6 5.4282 -2.0565 1.6932 23 6 5.1138 -0.8365 2.5772 24 6 6.7999 -2.6233 2.0472 25 6 6.7578 -3.1940 3.4683 26 8 5.7244 -4.1776 3.5530 27 6 4.4123 -3.6729 3.2958 28 6 4.3513 -3.1234 1.8670 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7365 2.0981 -0.7874 35 1 4.1923 3.4348 0.5409 36 1 2.4750 3.9024 0.5581 37 1 3.3278 3.5907 2.0890 38 1 6.0340 0.5598 0.3974 39 1 4.4697 0.3064 -0.4365 40 1 7.0561 -2.7903 -0.3763 41 1 7.5481 -1.1663 0.1612 42 1 5.9440 -0.8920 -2.1472 43 1 6.7201 -0.0702 -5.2856 44 1 6.0355 -0.3851 2.9444 45 1 4.4731 -1.1234 3.4110 46 1 7.0592 -3.4150 1.3444 47 1 7.5460 -1.8304 1.9952 48 1 6.5547 -2.3911 4.1770 49 1 7.7175 -3.6537 3.7047 50 1 4.1845 -2.8748 4.0024 51 1 3.6846 -4.4766 3.4079 52 1 3.3703 -2.6833 1.6877 53 1 4.5231 -3.9331 1.1578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186284322.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:37 Heat of formation + Delta-G solvation = -79.459465 kcal Electronic energy + Delta-G solvation = -31569.986314 eV Core-core repulsion = 27634.034486 eV Total energy + Delta-G solvation = -3935.951828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.12472 -40.39304 -38.47930 -36.79480 -36.35950 -34.54722 -33.39782 -33.10968 -32.14614 -30.78685 -28.48773 -27.75581 -27.09256 -25.83207 -24.97415 -23.88051 -23.59273 -22.74422 -21.63819 -19.74784 -19.40862 -18.91065 -17.79526 -17.15491 -17.09232 -16.92160 -16.61838 -16.41323 -16.11406 -15.82062 -15.52478 -15.27752 -15.16724 -15.05061 -14.61237 -14.31255 -14.07669 -13.94144 -13.81984 -13.68347 -13.54492 -13.22071 -13.20161 -13.04325 -12.95937 -12.94462 -12.72669 -12.54555 -12.32587 -12.23178 -12.13014 -12.04190 -11.94284 -11.88428 -11.66369 -11.25111 -11.15448 -10.98696 -10.81582 -10.38000 -9.93265 -9.82811 -8.93264 -7.90646 -5.18062 0.75216 1.45626 1.51030 1.52296 1.58208 1.95650 2.59139 2.97573 3.22811 3.40297 3.45064 3.54377 3.61233 3.81766 3.98464 4.05731 4.06403 4.08139 4.16719 4.18550 4.27778 4.36090 4.39470 4.43638 4.45891 4.50844 4.56539 4.61713 4.66959 4.70889 4.71743 4.73509 4.79863 4.82315 4.89147 4.95185 4.97881 5.01903 5.03571 5.09628 5.13263 5.15402 5.17979 5.25967 5.39242 5.42554 5.42895 5.55397 5.59831 6.27588 6.31586 6.40675 6.97987 7.39153 8.14118 8.37356 9.32391 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008092 B = 0.004516 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.303343 B = 6198.533108 C = 8460.914355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.101 4.101 4 C -0.186 4.186 5 C -0.099 4.099 6 C 0.582 3.418 7 O -0.584 6.584 8 N -0.611 5.611 9 C 0.121 3.879 10 C -0.086 4.086 11 H 0.074 0.926 12 C 0.167 3.833 13 N -0.742 5.742 14 C -0.241 4.241 15 H 0.075 0.925 16 C -0.070 4.070 17 N -0.966 5.966 18 Si 0.965 3.035 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.279 1.279 22 C -0.054 4.054 23 C 0.110 3.890 24 C -0.142 4.142 25 C 0.059 3.941 26 O -0.397 6.397 27 C 0.062 3.938 28 C -0.134 4.134 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.028 0.972 41 H 0.031 0.969 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.109 0.891 50 H 0.053 0.947 51 H 0.105 0.895 52 H 0.067 0.933 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 0.123 14.111 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C -0.120 4.120 4 C -0.189 4.189 5 C -0.156 4.156 6 C 0.373 3.627 7 O -0.465 6.465 8 N -0.343 5.343 9 C -0.002 4.002 10 C -0.105 4.105 11 H 0.093 0.907 12 C 0.041 3.959 13 N -0.385 5.385 14 C -0.373 4.373 15 H 0.093 0.907 16 C -0.262 4.262 17 N -0.617 5.617 18 Si 0.795 3.205 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.205 1.205 22 C -0.056 4.056 23 C -0.012 4.012 24 C -0.180 4.180 25 C -0.018 4.018 26 O -0.316 6.316 27 C -0.015 4.015 28 C -0.172 4.172 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.077 0.923 49 H 0.127 0.873 50 H 0.071 0.929 51 H 0.123 0.877 52 H 0.086 0.914 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.880 -0.083 14.736 16.711 hybrid contribution 0.484 0.444 -1.198 1.367 sum -7.397 0.361 13.537 15.430 Atomic orbital electron populations 1.21628 0.93041 1.02492 1.02405 1.20775 0.97905 0.93886 1.01837 1.23614 0.94837 0.97981 0.95554 1.21556 1.03137 0.97083 0.97125 1.20671 1.02886 0.89337 1.02720 1.18424 0.77848 0.79484 0.86984 1.90757 1.58932 1.70724 1.26062 1.49065 1.30189 1.41089 1.13945 1.22371 0.96510 0.96518 0.84775 1.22117 0.98182 0.94767 0.95477 0.90727 1.20925 0.93998 0.96794 0.84224 1.42546 1.11595 1.75175 1.09210 1.19533 0.91497 1.32804 0.93419 0.90747 1.25432 0.99706 1.02405 0.98692 1.69783 1.27514 1.49050 1.15331 0.85335 0.79634 0.77703 0.77820 1.20704 1.22414 1.20516 1.20988 0.96666 0.94377 0.93535 1.22585 0.96770 0.88605 0.93221 1.22270 0.95625 1.01747 0.98331 1.22779 0.91776 0.92047 0.95161 1.87897 1.16009 1.36602 1.91135 1.22685 0.84821 0.99613 0.94352 1.22088 0.98281 0.98039 0.98765 0.90975 0.91746 0.93099 0.90292 0.93597 0.83399 0.90809 0.88971 0.92016 0.91019 0.90589 0.95469 0.95157 0.79376 0.94114 0.89869 0.90147 0.90656 0.89461 0.92322 0.87297 0.92889 0.87666 0.91421 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.89 71.98 0.71 -1.92 16 2 C -0.11 -2.47 6.20 29.85 0.19 -2.29 16 3 C -0.10 -2.31 8.60 24.52 0.21 -2.10 16 4 C -0.19 -4.77 4.85 -18.70 -0.09 -4.86 16 5 C -0.10 -2.08 10.04 71.24 0.72 -1.37 16 6 C 0.58 17.60 5.34 86.57 0.46 18.06 16 7 O -0.58 -21.26 17.36 -4.07 -0.07 -21.33 16 8 N -0.61 -16.85 3.32 -812.49 -2.70 -19.55 16 9 C 0.12 3.50 6.10 86.57 0.53 4.03 16 10 C -0.09 -2.48 2.77 -10.01 -0.03 -2.51 16 11 H 0.07 2.32 7.71 -2.39 -0.02 2.30 16 12 C 0.17 5.89 4.39 86.38 0.38 6.27 16 13 N -0.74 -34.60 5.44 -343.45 -1.87 -36.47 16 14 C -0.24 -12.67 9.99 84.03 0.84 -11.83 16 15 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 16 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 17 N -0.97 -56.43 13.06 21.65 0.28 -56.15 16 18 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C -0.05 -1.28 0.69 -51.89 -0.04 -1.32 16 23 C 0.11 2.68 5.12 86.35 0.44 3.13 16 24 C -0.14 -3.09 3.63 30.52 0.11 -2.98 16 25 C 0.06 1.12 6.65 72.05 0.48 1.60 16 26 O -0.40 -9.11 10.75 -148.98 -1.60 -10.71 16 27 C 0.06 1.27 6.64 72.05 0.48 1.75 16 28 C -0.13 -3.03 4.68 30.53 0.14 -2.89 16 29 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.24 6.32 -2.39 -0.02 1.22 16 34 H 0.15 2.71 8.05 -2.91 -0.02 2.68 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 39 H 0.08 2.32 7.05 -2.38 -0.02 2.30 16 40 H 0.03 0.99 6.62 -2.39 -0.02 0.97 16 41 H 0.03 1.06 6.88 -2.39 -0.02 1.04 16 42 H 0.37 18.57 7.52 -92.71 -0.70 17.88 16 43 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 44 H 0.08 1.86 7.77 -2.38 -0.02 1.84 16 45 H 0.08 2.02 5.89 -2.39 -0.01 2.01 16 46 H 0.07 1.84 6.60 -2.39 -0.02 1.82 16 47 H 0.09 1.83 6.87 -2.39 -0.02 1.81 16 48 H 0.06 1.01 7.54 -2.39 -0.02 0.99 16 49 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.05 1.07 6.52 -2.39 -0.02 1.05 16 51 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 53 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -65.69 406.61 2.26 -63.42 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.19 Total: 36.87 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 6.00 Total: -2.59 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.28 Total: -112.17 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.67 Total: -32.04 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -65.69 2.26 -63.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186284322.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.037 kcal (2) G-P(sol) polarization free energy of solvation -65.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds