Wall clock time and date at job start Tue Mar 31 2020 20:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99537 * 2 1 4 4 C 1.50700 * 120.00409 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46587 * 95.00196 * 4 2 1 6 6 C 1.50704 * 109.46921 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99578 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.48204 * 127.80064 * 359.67955 * 8 6 5 10 10 C 1.54879 * 104.44980 * 140.69756 * 9 8 6 11 11 H 1.08999 * 110.55013 * 265.17131 * 10 9 8 12 12 C 1.53003 * 110.33527 * 142.84702 * 10 9 8 13 13 N 1.46498 * 109.47078 * 69.70953 * 12 10 9 14 14 C 1.36939 * 119.99841 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99985 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00110 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00322 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99812 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47149 * 90.00119 * 18 16 14 20 20 H 1.48492 * 109.47078 * 210.00144 * 18 16 14 21 21 H 1.48502 * 109.47182 * 330.00538 * 18 16 14 22 22 C 1.53790 * 104.74611 * 24.06364 * 10 9 8 23 23 C 1.48265 * 127.80437 * 180.02562 * 8 6 5 24 24 C 1.52581 * 110.28014 * 118.61816 * 22 10 9 25 25 C 1.53191 * 109.20528 * 177.68310 * 24 22 10 26 26 O 1.42908 * 109.34566 * 303.32949 * 25 24 22 27 27 C 1.42918 * 114.21413 * 61.61096 * 26 25 24 28 28 C 1.52587 * 110.25912 * 240.77206 * 22 10 9 29 29 H 1.08002 * 119.99293 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.00323 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46953 * 239.99613 * 3 2 1 32 32 H 1.09000 * 109.47318 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47161 * 119.99841 * 3 2 1 34 34 H 1.08998 * 109.47060 * 215.00005 * 4 2 1 35 35 H 1.08992 * 109.47339 * 335.00379 * 4 2 1 36 36 H 1.08998 * 109.47264 * 299.99684 * 5 4 2 37 37 H 1.09001 * 109.46917 * 60.00055 * 5 4 2 38 38 H 1.08995 * 110.40153 * 259.53220 * 9 8 6 39 39 H 1.09001 * 110.39622 * 21.95596 * 9 8 6 40 40 H 1.09007 * 109.46816 * 189.70696 * 12 10 9 41 41 H 1.09002 * 109.47220 * 309.70358 * 12 10 9 42 42 H 0.97003 * 120.00213 * 359.97438 * 13 12 10 43 43 H 0.96993 * 120.00111 * 179.97438 * 17 16 14 44 44 H 1.09004 * 110.42284 * 337.86954 * 23 8 6 45 45 H 1.09000 * 110.42400 * 100.22733 * 23 8 6 46 46 H 1.08998 * 109.51851 * 297.60880 * 24 22 10 47 47 H 1.09012 * 109.51398 * 57.76841 * 24 22 10 48 48 H 1.08996 * 109.49647 * 183.36773 * 25 24 22 49 49 H 1.09005 * 109.49369 * 63.28833 * 25 24 22 50 50 H 1.08995 * 109.49479 * 178.42669 * 27 26 25 51 51 H 1.08997 * 109.51431 * 58.34976 * 27 26 25 52 52 H 1.08999 * 109.51933 * 302.21287 * 28 22 10 53 53 H 1.09005 * 109.51853 * 62.33107 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4275 -1.6843 -1.4364 6 6 3.1817 -2.9891 -1.4358 7 8 3.4064 -3.5591 -0.3891 8 7 3.6073 -3.5219 -2.5982 9 6 3.4253 -2.9809 -3.9659 10 6 4.7695 -3.2715 -4.6784 11 1 5.4296 -2.4062 -4.6176 12 6 4.5251 -3.6521 -6.1401 13 7 4.0649 -2.4749 -6.8808 14 6 3.7802 -2.5747 -8.2166 15 1 3.8952 -3.5211 -8.7240 16 6 3.3447 -1.4592 -8.9186 17 7 3.0714 -1.5550 -10.2026 18 14 3.1463 0.1779 -8.0411 19 1 4.4207 0.9368 -8.1151 20 1 2.0655 0.9607 -8.6921 21 1 2.7954 -0.0624 -6.6182 22 6 5.3715 -4.4594 -3.9093 23 6 4.3572 -4.7852 -2.7983 24 6 5.5395 -5.6593 -4.8366 25 6 6.1932 -6.8076 -4.0614 26 8 7.4372 -6.3630 -3.5163 27 6 7.3178 -5.2831 -2.5878 28 6 6.7138 -4.0677 -3.2984 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 2.6901 1.3629 -0.8900 32 1 1.3551 2.1337 -0.0005 33 1 2.6901 1.3630 0.8900 34 1 2.9743 -1.1985 0.5900 35 1 1.4388 -2.0852 0.4351 36 1 1.5168 -1.7909 -2.0258 37 1 3.0524 -0.9041 -1.8709 38 1 2.6064 -3.4928 -4.4712 39 1 3.2384 -1.9077 -3.9282 40 1 5.4527 -4.0185 -6.5800 41 1 3.7660 -4.4327 -6.1902 42 1 3.9612 -1.6250 -6.4250 43 1 2.7667 -0.7756 -10.6930 44 1 4.8746 -5.0696 -1.8820 45 1 3.6837 -5.5810 -3.1165 46 1 4.5630 -5.9764 -5.2025 47 1 6.1727 -5.3822 -5.6796 48 1 6.3702 -7.6465 -4.7344 49 1 5.5336 -7.1225 -3.2527 50 1 8.3036 -5.0254 -2.2008 51 1 6.6700 -5.5816 -1.7635 52 1 7.3889 -3.7338 -4.0863 53 1 6.5655 -3.2614 -2.5799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186393661.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:46 Heat of formation + Delta-G solvation = -76.938308 kcal Electronic energy + Delta-G solvation = -30740.106753 eV Core-core repulsion = 26804.264251 eV Total energy + Delta-G solvation = -3935.842502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05976 -40.29157 -38.53882 -37.31855 -36.49890 -34.65267 -33.59897 -32.25665 -32.16207 -31.13011 -28.41667 -28.03066 -27.21574 -25.88974 -24.87747 -24.68850 -23.47920 -22.01910 -20.27248 -20.01928 -19.42218 -19.13366 -18.08017 -17.22999 -17.09782 -16.92716 -16.68293 -16.43518 -16.22818 -15.88453 -15.59222 -15.49453 -15.35671 -14.85627 -14.77322 -14.71045 -14.23812 -14.00267 -13.90116 -13.60303 -13.51059 -13.26596 -13.14736 -13.10168 -12.88560 -12.83246 -12.54429 -12.51976 -12.35634 -12.16333 -12.01910 -12.01042 -11.91506 -11.84702 -11.76271 -11.25105 -11.14735 -10.96584 -10.86029 -10.38138 -9.95381 -9.82156 -9.24832 -7.98954 -5.32529 1.27454 1.39234 1.44285 1.51579 1.53337 1.90560 2.51816 2.97842 3.21230 3.31907 3.36622 3.53154 3.60926 3.84364 3.92533 4.01945 4.04849 4.06364 4.11142 4.14568 4.17209 4.21673 4.29123 4.36448 4.44190 4.54717 4.57983 4.61835 4.66589 4.69062 4.71514 4.79723 4.81776 4.84211 4.89764 4.91676 4.96440 5.02549 5.04855 5.09394 5.12087 5.14018 5.15945 5.19970 5.39725 5.40574 5.73048 5.80494 5.96648 6.24240 6.28174 6.46238 7.04934 7.12139 7.87292 8.06351 9.22628 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.006289 B = 0.004865 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4451.089680 B = 5753.507206 C = 9543.456608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.122 4.122 4 C -0.063 4.063 5 C -0.127 4.127 6 C 0.532 3.468 7 O -0.581 6.581 8 N -0.619 5.619 9 C 0.108 3.892 10 C -0.093 4.093 11 H 0.086 0.914 12 C 0.167 3.833 13 N -0.756 5.756 14 C -0.231 4.231 15 H 0.056 0.944 16 C -0.064 4.064 17 N -0.986 5.986 18 Si 0.950 3.050 19 H -0.282 1.282 20 H -0.300 1.300 21 H -0.241 1.241 22 C -0.055 4.055 23 C 0.112 3.888 24 C -0.144 4.144 25 C 0.059 3.941 26 O -0.399 6.399 27 C 0.060 3.940 28 C -0.135 4.135 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.366 0.634 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.059 0.941 50 H 0.105 0.895 51 H 0.054 0.946 52 H 0.072 0.928 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -1.765 22.269 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.135 4.135 3 C -0.178 4.178 4 C -0.101 4.101 5 C -0.166 4.166 6 C 0.323 3.677 7 O -0.462 6.462 8 N -0.352 5.352 9 C -0.014 4.014 10 C -0.113 4.113 11 H 0.104 0.896 12 C 0.041 3.959 13 N -0.402 5.402 14 C -0.362 4.362 15 H 0.074 0.926 16 C -0.255 4.255 17 N -0.637 5.637 18 Si 0.778 3.222 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.165 1.165 22 C -0.057 4.057 23 C -0.010 4.010 24 C -0.182 4.182 25 C -0.018 4.018 26 O -0.318 6.318 27 C -0.017 4.017 28 C -0.172 4.172 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.124 0.876 49 H 0.077 0.923 50 H 0.123 0.877 51 H 0.072 0.928 52 H 0.091 0.909 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.975 -2.222 22.698 22.892 hybrid contribution -0.552 1.083 -0.351 1.266 sum 1.423 -1.139 22.347 22.421 Atomic orbital electron populations 1.23900 0.95202 1.02492 1.01639 1.21816 0.95662 0.95655 1.00353 1.20921 1.00496 0.93816 1.02575 1.20306 1.00402 0.94586 0.94837 1.21653 1.01480 0.93768 0.99749 1.20781 0.78474 0.87099 0.81317 1.90674 1.59338 1.64449 1.31696 1.49107 1.55631 1.24185 1.06283 1.22655 0.97645 1.00602 0.80531 1.22280 0.96474 0.98648 0.93872 0.89556 1.20942 0.97056 0.88860 0.89000 1.42716 1.81879 1.09071 1.06570 1.19004 1.35619 0.96063 0.85481 0.92576 1.25498 1.02056 1.01732 0.96210 1.69888 1.53941 1.30693 1.09142 0.85477 0.77254 0.79948 0.79569 1.20823 1.22711 1.16480 1.20987 0.94956 0.95142 0.94588 1.22517 0.93437 0.86590 0.98493 1.22284 1.02636 0.94822 0.98461 1.22757 0.85424 0.96302 0.97293 1.87903 1.30989 1.51768 1.61167 1.22711 1.02181 0.85968 0.90791 1.22101 0.95502 0.98820 1.00799 0.88501 0.87356 0.91262 0.91214 0.91168 0.91273 0.91707 0.87843 0.87404 0.90352 0.89195 0.94977 0.94862 0.80081 0.93474 0.90230 0.90276 0.89593 0.90789 0.87646 0.92279 0.87722 0.92816 0.90921 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.08 13.90 67.78 0.94 -2.14 16 2 C -0.13 -2.23 5.31 -16.49 -0.09 -2.32 16 3 C -0.12 -1.68 10.12 71.24 0.72 -0.96 16 4 C -0.06 -1.21 4.67 29.85 0.14 -1.07 16 5 C -0.13 -2.40 4.66 29.85 0.14 -2.26 16 6 C 0.53 13.05 7.91 87.66 0.69 13.75 16 7 O -0.58 -17.98 16.25 -3.05 -0.05 -18.03 16 8 N -0.62 -14.10 3.32 -807.43 -2.68 -16.78 16 9 C 0.11 2.49 6.32 86.69 0.55 3.03 16 10 C -0.09 -2.29 2.75 -9.88 -0.03 -2.32 16 11 H 0.09 2.15 7.70 -2.39 -0.02 2.13 16 12 C 0.17 5.45 4.41 86.38 0.38 5.83 16 13 N -0.76 -31.80 5.29 -343.44 -1.82 -33.62 16 14 C -0.23 -12.44 10.47 84.03 0.88 -11.56 16 15 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 16 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 17 N -0.99 -61.67 13.97 21.65 0.30 -61.37 16 18 Si 0.95 42.82 27.74 68.60 1.90 44.72 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.24 -9.25 6.52 99.48 0.65 -8.61 16 22 C -0.06 -1.16 0.69 -51.88 -0.04 -1.20 16 23 C 0.11 2.39 5.10 86.35 0.44 2.83 16 24 C -0.14 -3.00 3.62 30.52 0.11 -2.88 16 25 C 0.06 1.09 6.65 72.05 0.48 1.57 16 26 O -0.40 -8.86 10.75 -148.98 -1.60 -10.46 16 27 C 0.06 1.13 6.64 72.05 0.48 1.61 16 28 C -0.13 -2.68 4.67 30.53 0.14 -2.54 16 29 H 0.10 1.50 7.99 -2.91 -0.02 1.48 16 30 H 0.11 1.45 7.83 -2.91 -0.02 1.43 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.85 7.78 -2.39 -0.02 0.83 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 35 H 0.06 1.36 7.94 -2.39 -0.02 1.34 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 1.76 7.96 -2.39 -0.02 1.74 16 38 H 0.08 1.92 7.76 -2.39 -0.02 1.90 16 39 H 0.09 1.90 7.31 -2.39 -0.02 1.88 16 40 H 0.03 1.11 6.42 -2.38 -0.02 1.09 16 41 H 0.03 1.10 6.99 -2.39 -0.02 1.08 16 42 H 0.37 14.42 5.48 -92.71 -0.51 13.92 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.08 1.78 5.92 -2.38 -0.01 1.77 16 45 H 0.08 1.60 7.78 -2.39 -0.02 1.58 16 46 H 0.09 1.74 6.97 -2.39 -0.02 1.72 16 47 H 0.07 1.77 6.51 -2.38 -0.02 1.75 16 48 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.06 0.98 7.55 -2.38 -0.02 0.96 16 50 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.05 0.98 6.52 -2.39 -0.02 0.97 16 52 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -69.00 405.33 2.79 -66.21 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.32 Total: 33.09 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 6.41 Total: -3.76 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.19 Total: -111.77 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.65 Total: -28.50 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.90 Total: 44.72 kcal Total: -69.00 2.79 -66.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186393661.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.725 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds