Wall clock time and date at job start Tue Mar 31 2020 20:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 120.00080 * 2 1 4 4 C 1.50696 * 119.99655 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47055 * 95.00035 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.48187 * 127.80028 * 0.02658 * 8 6 5 10 10 C 1.54516 * 104.63442 * 219.24412 * 9 8 6 11 11 H 1.09006 * 110.37850 * 95.04550 * 10 9 8 12 12 C 1.53005 * 110.37985 * 217.28285 * 10 9 8 13 13 N 1.46502 * 109.46970 * 293.54802 * 12 10 9 14 14 C 1.36938 * 119.99909 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00121 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99689 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47168 * 90.00413 * 18 16 14 20 20 H 1.48501 * 109.47192 * 209.99611 * 18 16 14 21 21 H 1.48496 * 109.47363 * 329.99991 * 18 16 14 22 22 C 1.53778 * 104.77969 * 336.21935 * 10 9 8 23 23 C 1.48255 * 127.79834 * 179.70681 * 8 6 5 24 24 C 1.52582 * 110.28463 * 241.19571 * 22 10 9 25 25 C 1.53206 * 109.20461 * 182.30913 * 24 22 10 26 26 O 1.42906 * 109.34255 * 56.66694 * 25 24 22 27 27 C 1.42916 * 114.22106 * 298.38924 * 26 25 24 28 28 C 1.52596 * 110.26775 * 119.03605 * 22 10 9 29 29 H 1.08001 * 119.99663 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00449 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46811 * 269.99668 * 3 2 1 32 32 H 1.08999 * 109.46886 * 29.99969 * 3 2 1 33 33 H 1.08991 * 109.46938 * 149.99938 * 3 2 1 34 34 H 1.09001 * 109.47328 * 335.00305 * 4 2 1 35 35 H 1.09004 * 109.47043 * 215.00115 * 4 2 1 36 36 H 1.09001 * 109.46832 * 59.99966 * 5 4 2 37 37 H 1.09000 * 109.47611 * 300.00263 * 5 4 2 38 38 H 1.09001 * 110.40789 * 338.03318 * 9 8 6 39 39 H 1.08999 * 110.40596 * 100.45974 * 9 8 6 40 40 H 1.09001 * 109.46936 * 53.54746 * 12 10 9 41 41 H 1.08997 * 109.47212 * 173.54535 * 12 10 9 42 42 H 0.96999 * 120.00070 * 359.97438 * 13 12 10 43 43 H 0.97004 * 119.99611 * 179.97438 * 17 16 14 44 44 H 1.08998 * 110.43095 * 259.65866 * 23 8 6 45 45 H 1.09009 * 110.43163 * 22.14429 * 23 8 6 46 46 H 1.08998 * 109.51871 * 302.22380 * 24 22 10 47 47 H 1.08998 * 109.51548 * 62.39179 * 24 22 10 48 48 H 1.09009 * 109.49167 * 296.70644 * 25 24 22 49 49 H 1.09000 * 109.51231 * 176.64857 * 25 24 22 50 50 H 1.09003 * 109.49301 * 301.66499 * 27 26 25 51 51 H 1.08992 * 109.51600 * 181.59287 * 27 26 25 52 52 H 1.09004 * 109.51604 * 297.63231 * 28 22 10 53 53 H 1.09001 * 109.51619 * 57.73880 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4273 -1.6846 -1.4362 6 6 3.1813 -2.9894 -1.4356 7 8 3.4051 -3.5599 -0.3891 8 7 3.6069 -3.5224 -2.5981 9 6 3.4311 -2.9779 -3.9651 10 6 3.1380 -4.2150 -4.8433 11 1 2.0629 -4.3528 -4.9582 12 6 3.8043 -4.0662 -6.2126 13 7 3.1754 -2.9639 -6.9445 14 6 3.6095 -2.6415 -8.2026 15 1 4.4158 -3.1996 -8.6551 16 6 3.0133 -1.5974 -8.8963 17 7 2.0309 -0.9170 -8.3445 18 14 3.6060 -1.1573 -10.6122 19 1 2.8363 -1.9348 -11.6164 20 1 3.4028 0.2946 -10.8488 21 1 5.0498 -1.4816 -10.7356 22 6 3.7501 -5.3968 -4.0730 23 6 4.3621 -4.7824 -2.7974 24 6 4.8397 -6.0643 -4.9069 25 6 5.3917 -7.2713 -4.1416 26 8 4.3206 -8.1647 -3.8305 27 6 3.3104 -7.5996 -2.9924 28 6 2.6667 -6.4073 -3.7074 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5401 -0.9352 0.0004 31 1 2.2453 1.6197 -1.0277 32 1 1.4745 2.0647 0.5138 33 1 3.0159 1.1747 0.5138 34 1 1.4385 -2.0853 0.4352 35 1 2.9742 -1.1986 0.5900 36 1 3.0523 -0.9044 -1.8708 37 1 1.5167 -1.7910 -2.0257 38 1 2.5906 -2.2844 -3.9928 39 1 4.3439 -2.4836 -4.2975 40 1 4.8654 -3.8552 -6.0794 41 1 3.6858 -4.9912 -6.7768 42 1 2.4514 -2.4624 -6.5379 43 1 1.6145 -0.1871 -8.8292 44 1 5.4214 -4.5719 -2.9445 45 1 4.2205 -5.4496 -1.9470 46 1 4.4197 -6.3963 -5.8563 47 1 5.6437 -5.3522 -5.0927 48 1 5.8625 -6.9324 -3.2186 49 1 6.1285 -7.7870 -4.7575 50 1 3.7592 -7.2640 -2.0574 51 1 2.5498 -8.3512 -2.7815 52 1 1.9379 -5.9370 -3.0472 53 1 2.1684 -6.7510 -4.6138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186393663.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:49 Heat of formation + Delta-G solvation = -79.944796 kcal Electronic energy + Delta-G solvation = -30624.059105 eV Core-core repulsion = 26688.086232 eV Total energy + Delta-G solvation = -3935.972874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03632 -40.28129 -38.51038 -37.29678 -36.35445 -34.63679 -33.39479 -32.22895 -32.13168 -30.77505 -28.38485 -28.02148 -27.07459 -25.93309 -24.99052 -24.70362 -23.64974 -21.89901 -20.24409 -19.70610 -19.40417 -18.93738 -18.04257 -17.21766 -17.08100 -16.91804 -16.67170 -16.49574 -16.12233 -15.82361 -15.64025 -15.35533 -15.17388 -15.00932 -14.98333 -14.52675 -14.19466 -13.95782 -13.71793 -13.56809 -13.39387 -13.19648 -13.11028 -12.99304 -12.85272 -12.76070 -12.54316 -12.53577 -12.30975 -12.21489 -12.09904 -12.01263 -11.88514 -11.84303 -11.65933 -11.24330 -11.12409 -10.95785 -10.82081 -10.37391 -9.93100 -9.80825 -8.93969 -7.91708 -5.19073 1.28145 1.50595 1.51168 1.53469 1.59128 1.92329 2.58612 2.98195 3.24444 3.40927 3.45250 3.55658 3.62576 3.93630 3.98954 4.04471 4.06634 4.08189 4.14411 4.18336 4.20916 4.29482 4.29962 4.41002 4.47115 4.57739 4.58546 4.63724 4.66792 4.69996 4.74559 4.80554 4.83360 4.85385 4.91766 4.94366 4.98796 5.04291 5.06938 5.10827 5.12695 5.16103 5.16393 5.21933 5.40568 5.43770 5.55164 5.73982 5.97213 6.28253 6.31007 6.46747 7.05223 7.38545 8.13655 8.36700 9.31593 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.006505 B = 0.004250 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4303.330564 B = 6587.133197 C =10307.426812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.121 4.121 4 C -0.062 4.062 5 C -0.126 4.126 6 C 0.533 3.467 7 O -0.581 6.581 8 N -0.620 5.620 9 C 0.116 3.884 10 C -0.089 4.089 11 H 0.075 0.925 12 C 0.167 3.833 13 N -0.744 5.744 14 C -0.240 4.240 15 H 0.075 0.925 16 C -0.070 4.070 17 N -0.967 5.967 18 Si 0.965 3.035 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.270 1.270 22 C -0.055 4.055 23 C 0.112 3.888 24 C -0.142 4.142 25 C 0.059 3.941 26 O -0.398 6.398 27 C 0.062 3.938 28 C -0.135 4.135 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.108 0.892 50 H 0.054 0.946 51 H 0.105 0.895 52 H 0.069 0.931 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -5.565 15.818 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.135 4.135 3 C -0.178 4.178 4 C -0.100 4.100 5 C -0.166 4.166 6 C 0.324 3.676 7 O -0.461 6.461 8 N -0.352 5.352 9 C -0.007 4.007 10 C -0.108 4.108 11 H 0.093 0.907 12 C 0.041 3.959 13 N -0.386 5.386 14 C -0.372 4.372 15 H 0.093 0.907 16 C -0.262 4.262 17 N -0.617 5.617 18 Si 0.795 3.205 19 H -0.218 1.218 20 H -0.224 1.224 21 H -0.195 1.195 22 C -0.057 4.057 23 C -0.010 4.010 24 C -0.180 4.180 25 C -0.018 4.018 26 O -0.317 6.317 27 C -0.015 4.015 28 C -0.172 4.172 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.077 0.923 49 H 0.126 0.874 50 H 0.072 0.928 51 H 0.123 0.877 52 H 0.088 0.912 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.767 -6.022 16.263 17.561 hybrid contribution -0.295 0.943 -1.034 1.430 sum 2.473 -5.079 15.229 16.243 Atomic orbital electron populations 1.23867 0.95218 1.02515 1.01622 1.21827 0.95691 0.95674 1.00349 1.20907 1.00297 0.94012 1.02571 1.20343 1.00369 0.94649 0.94661 1.21631 1.01389 0.93778 0.99784 1.20752 0.78396 0.87112 0.81365 1.90660 1.59580 1.64298 1.31594 1.49122 1.55394 1.24366 1.06329 1.22448 1.02372 0.96228 0.79626 1.22134 1.00487 0.94052 0.94156 0.90699 1.20921 0.95134 0.90111 0.89778 1.42569 1.42318 1.37743 1.16016 1.19579 1.13415 1.11336 0.92889 0.90714 1.25431 0.99373 0.99358 1.02080 1.69788 1.28260 1.24619 1.39076 0.85264 0.78154 0.76502 0.80596 1.21785 1.22405 1.19473 1.21055 0.96071 0.94269 0.94266 1.22597 0.95761 0.85406 0.97274 1.22268 0.98347 0.98173 0.99224 1.22776 0.89044 0.90646 0.99303 1.87894 1.34378 1.39568 1.69904 1.22691 0.90847 0.95712 0.92241 1.22091 0.97502 0.96065 1.01584 0.87324 0.88459 0.91201 0.90891 0.91560 0.91591 0.91215 0.87773 0.88109 0.89990 0.90714 0.95102 0.95628 0.79325 0.94108 0.90100 0.90190 0.90803 0.89488 0.92284 0.87382 0.92778 0.87700 0.91229 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.54 13.89 67.77 0.94 -2.60 16 2 C -0.14 -2.59 5.31 -16.49 -0.09 -2.68 16 3 C -0.12 -1.98 10.03 71.24 0.71 -1.26 16 4 C -0.06 -1.35 4.67 29.85 0.14 -1.21 16 5 C -0.13 -2.82 4.66 29.85 0.14 -2.69 16 6 C 0.53 14.61 7.91 87.66 0.69 15.30 16 7 O -0.58 -19.24 16.25 -3.02 -0.05 -19.29 16 8 N -0.62 -15.99 3.32 -807.58 -2.68 -18.67 16 9 C 0.12 3.15 6.14 86.57 0.53 3.68 16 10 C -0.09 -2.50 2.77 -10.01 -0.03 -2.53 16 11 H 0.07 2.28 7.70 -2.38 -0.02 2.26 16 12 C 0.17 5.83 4.39 86.38 0.38 6.21 16 13 N -0.74 -34.49 5.44 -343.44 -1.87 -36.35 16 14 C -0.24 -12.63 9.99 84.03 0.84 -11.79 16 15 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 16 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 17 N -0.97 -56.47 13.06 21.65 0.28 -56.19 16 18 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.06 -1.28 0.69 -51.77 -0.04 -1.31 16 23 C 0.11 2.62 5.12 86.47 0.44 3.06 16 24 C -0.14 -3.07 3.63 30.52 0.11 -2.96 16 25 C 0.06 1.12 6.65 72.05 0.48 1.59 16 26 O -0.40 -9.08 10.75 -148.98 -1.60 -10.69 16 27 C 0.06 1.24 6.64 72.05 0.48 1.72 16 28 C -0.13 -2.99 4.68 30.53 0.14 -2.85 16 29 H 0.11 1.70 8.04 -2.91 -0.02 1.68 16 30 H 0.10 1.73 7.99 -2.91 -0.02 1.70 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.02 8.06 -2.39 -0.02 1.01 16 33 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 34 H 0.07 1.52 7.94 -2.39 -0.02 1.51 16 35 H 0.07 1.57 8.05 -2.38 -0.02 1.55 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.16 7.95 -2.39 -0.02 2.14 16 38 H 0.08 2.26 7.31 -2.39 -0.02 2.24 16 39 H 0.07 2.16 7.80 -2.39 -0.02 2.14 16 40 H 0.03 1.06 6.89 -2.39 -0.02 1.05 16 41 H 0.03 0.93 6.62 -2.39 -0.02 0.91 16 42 H 0.37 18.43 7.52 -92.71 -0.70 17.74 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.08 1.75 7.78 -2.39 -0.02 1.74 16 45 H 0.08 1.93 5.95 -2.38 -0.01 1.92 16 46 H 0.07 1.80 6.60 -2.39 -0.02 1.79 16 47 H 0.09 1.80 6.88 -2.39 -0.02 1.79 16 48 H 0.06 1.00 7.54 -2.38 -0.02 0.98 16 49 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.05 1.06 6.53 -2.39 -0.02 1.04 16 51 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 52 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 53 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.35 408.59 2.65 -61.70 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.19 Total: 36.67 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 6.35 Total: -3.67 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.26 Total: -111.21 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.65 Total: -29.98 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.35 2.65 -61.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186393663.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.245 kcal (2) G-P(sol) polarization free energy of solvation -64.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds