Wall clock time and date at job start Tue Mar 31 2020 19:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00356 * 2 1 4 4 C 1.53005 * 109.47019 * 125.00129 * 3 2 1 5 5 C 1.52999 * 109.47145 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.46988 * 180.02562 * 5 4 3 7 7 C 1.53009 * 109.47045 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47135 * 179.97438 * 7 6 5 9 9 C 1.48054 * 111.00150 * 170.00056 * 8 7 6 10 10 C 1.53398 * 86.02491 * 222.77488 * 9 8 7 11 11 C 1.48062 * 110.99861 * 70.54686 * 8 7 6 12 12 C 1.52563 * 113.80509 * 268.71612 * 10 9 8 13 13 N 1.46271 * 109.56650 * 273.97854 * 12 10 9 14 14 C 1.46503 * 118.71402 * 163.92105 * 13 12 10 15 15 C 1.52998 * 109.47013 * 90.00177 * 14 13 12 16 16 C 1.50699 * 109.47172 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46914 * 90.00147 * 20 18 16 22 22 H 1.48493 * 109.47499 * 209.99857 * 20 18 16 23 23 H 1.48498 * 109.47217 * 330.00516 * 20 18 16 24 24 C 1.33712 * 122.56694 * 343.92231 * 13 12 10 25 25 O 1.21282 * 118.37931 * 183.25932 * 24 13 12 26 26 C 1.50163 * 123.24130 * 3.23823 * 24 13 12 27 27 O 1.42681 * 113.76711 * 138.11412 * 10 9 8 28 28 H 1.08004 * 119.99477 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.00140 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99918 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46610 * 5.00426 * 3 2 1 32 32 H 1.08998 * 109.47743 * 245.00697 * 3 2 1 33 33 H 1.09002 * 109.46701 * 60.00140 * 4 3 2 34 34 H 1.09002 * 109.46933 * 300.00512 * 4 3 2 35 35 H 1.09007 * 109.46795 * 60.00107 * 5 4 3 36 36 H 1.08997 * 109.46913 * 300.00488 * 5 4 3 37 37 H 1.08998 * 109.47351 * 60.00119 * 6 5 4 38 38 H 1.09000 * 109.47057 * 299.99553 * 6 5 4 39 39 H 1.09007 * 109.46813 * 59.99766 * 7 6 5 40 40 H 1.08997 * 109.46838 * 300.00182 * 7 6 5 41 41 H 1.08993 * 113.78984 * 108.49572 * 9 8 7 42 42 H 1.09002 * 113.78491 * 337.05011 * 9 8 7 43 43 H 1.09001 * 113.78482 * 22.95195 * 11 8 7 44 44 H 1.09007 * 113.78819 * 251.50526 * 11 8 7 45 45 H 1.08997 * 109.45597 * 34.01159 * 12 10 9 46 46 H 1.09004 * 109.44959 * 153.94964 * 12 10 9 47 47 H 1.08996 * 109.46694 * 210.00179 * 14 13 12 48 48 H 1.09000 * 109.47017 * 330.00267 * 14 13 12 49 49 H 1.09004 * 109.47037 * 300.00074 * 15 14 13 50 50 H 1.08996 * 109.47281 * 59.99695 * 15 14 13 51 51 H 0.96995 * 120.00011 * 180.02562 * 19 18 16 52 52 H 1.09000 * 109.35284 * 222.12682 * 26 24 13 53 53 H 1.08998 * 109.35259 * 102.56378 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3329 1.1817 5 6 3.7999 2.6582 1.1821 6 6 4.7718 2.6857 2.3633 7 6 5.5360 4.0113 2.3640 8 7 6.4688 4.0381 3.4985 9 6 7.3916 5.1916 3.3996 10 6 8.4918 4.2116 3.8266 11 6 7.5901 3.0949 3.2858 12 6 8.7108 4.1510 5.3352 13 7 9.6449 5.2023 5.7373 14 6 9.7297 5.5643 7.1543 15 6 10.7911 4.7006 7.8387 16 6 10.8779 5.0725 9.2965 17 1 10.2402 5.8477 9.6949 18 6 11.7722 4.4238 10.1213 19 7 12.5499 3.4808 9.6358 20 14 11.8803 4.8853 11.9282 21 1 10.9344 4.0493 12.7100 22 1 13.2638 4.6551 12.4160 23 1 11.5286 6.3184 12.0950 24 6 10.4244 5.8459 4.8620 25 8 11.2144 6.6628 5.2855 26 6 10.3702 5.6068 3.3805 27 8 9.7123 4.3669 3.1041 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6214 1.4027 -0.9314 33 1 3.7401 0.5063 1.0920 34 1 2.4774 1.2354 2.1130 35 1 3.0946 3.4845 1.2719 36 1 4.3575 2.7561 0.2507 37 1 5.4769 1.8595 2.2730 38 1 4.2144 2.5877 3.2948 39 1 4.8306 4.8373 2.4545 40 1 6.0933 4.1099 1.4325 41 1 7.1942 5.9763 4.1299 42 1 7.5118 5.5728 2.3855 43 1 7.7692 2.8540 2.2379 44 1 7.5505 2.2132 3.9256 45 1 7.7591 4.2959 5.8464 46 1 9.1221 3.1778 5.6034 47 1 10.0030 6.6156 7.2450 48 1 8.7634 5.3977 7.6304 49 1 10.5178 3.6493 7.7479 50 1 11.7573 4.8671 7.3627 51 1 13.1787 3.0242 10.2162 52 1 11.3844 5.5740 2.9825 53 1 9.8234 6.4200 2.9031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272700128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:41 Heat of formation + Delta-G solvation = -38.547555 kcal Electronic energy + Delta-G solvation = -28912.967665 eV Core-core repulsion = 24978.789911 eV Total energy + Delta-G solvation = -3934.177754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37939 -39.32766 -37.30873 -36.65285 -35.40994 -34.43052 -33.01838 -31.46461 -30.09831 -29.08480 -27.42498 -26.49159 -26.30047 -24.51772 -24.15212 -22.08343 -21.43902 -21.24775 -20.12269 -20.02617 -18.14023 -17.73437 -16.85184 -16.43143 -16.23722 -15.89738 -15.76777 -15.57803 -15.13975 -14.76198 -14.52973 -14.33571 -14.21861 -13.90023 -13.75149 -13.44122 -13.28834 -13.02459 -12.73613 -12.59398 -12.56615 -12.32948 -12.14337 -11.97712 -11.70491 -11.49964 -11.41748 -11.28730 -11.21901 -11.05220 -10.90903 -10.85819 -10.78605 -10.63943 -10.20829 -9.86627 -9.81601 -9.73749 -9.31290 -9.20048 -8.97775 -8.33132 -8.09089 -5.98218 -4.01373 1.85223 2.89932 3.09299 3.33846 3.39921 3.43424 3.47441 3.61640 4.09304 4.28271 4.34614 4.48475 4.50037 4.57613 4.61172 4.70044 4.78736 4.83369 4.90309 5.00237 5.12568 5.13889 5.16967 5.20676 5.28039 5.36691 5.37697 5.38228 5.44488 5.47070 5.50067 5.53634 5.55802 5.60645 5.68773 5.77581 5.85551 5.88936 5.97207 6.04606 6.10348 6.20174 6.33939 6.52078 6.64204 6.68868 6.84932 6.91087 7.61881 7.73529 7.94968 8.02046 8.37275 8.52720 9.05082 9.62242 11.13248 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.001863 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.100998 B =15022.057322 C =16302.731425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.096 4.096 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.116 4.116 7 C 0.023 3.977 8 N -0.471 5.471 9 C -0.019 4.019 10 C 0.068 3.932 11 C 0.027 3.973 12 C 0.117 3.883 13 N -0.596 5.596 14 C 0.114 3.886 15 C 0.014 3.986 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.479 3.521 25 O -0.539 6.539 26 C 0.053 3.947 27 O -0.359 6.359 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.015 0.985 50 H 0.022 0.978 51 H 0.260 0.740 52 H 0.127 0.873 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 -3.875 -22.384 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.133 4.133 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.105 4.105 8 N -0.194 5.194 9 C -0.148 4.148 10 C 0.028 3.972 11 C -0.102 4.102 12 C -0.007 4.007 13 N -0.329 5.329 14 C -0.006 4.006 15 C -0.024 4.024 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.265 3.735 25 O -0.417 6.417 26 C -0.026 4.026 27 O -0.276 6.276 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.034 0.966 50 H 0.041 0.959 51 H 0.070 0.930 52 H 0.145 0.855 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.715 -3.769 -21.681 30.222 hybrid contribution 0.452 0.304 0.338 0.641 sum -20.263 -3.465 -21.344 29.633 Atomic orbital electron populations 1.23866 0.96028 1.01817 1.01763 1.23008 0.96064 0.98666 0.99386 1.20802 0.98267 0.95259 0.99009 1.21535 0.97777 0.97716 0.98214 1.21570 0.98052 0.97649 0.98384 1.21546 0.98140 0.96633 0.99075 1.22668 0.96462 0.99140 0.92250 1.68566 1.08929 1.03606 1.38342 1.24564 0.92192 0.95895 1.02102 1.23372 0.83859 0.97576 0.92439 1.24014 0.87934 0.96462 1.01747 1.21656 0.94645 0.92668 0.91715 1.47696 1.39076 1.36531 1.09551 1.21957 1.00868 1.01283 0.76511 1.19351 0.93769 0.94422 0.94820 1.21088 1.20944 1.20138 0.93740 0.92533 1.24998 0.95457 0.95054 0.98778 1.69980 1.23226 1.24349 1.35624 0.86553 0.77250 0.78873 0.85077 1.20671 1.21213 1.19820 1.20623 0.81322 0.82169 0.89366 1.90762 1.36554 1.35477 1.78924 1.22748 1.00291 0.87346 0.92261 1.88094 1.35989 1.37896 1.65665 0.88657 0.88605 0.87448 0.91575 0.91066 0.91778 0.91730 0.91901 0.92066 0.91783 0.90896 0.90427 0.93983 0.88506 0.90176 0.89693 0.87760 0.88673 0.90186 0.90685 0.91663 0.96649 0.95925 0.92994 0.85512 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.01 0.42 -0.68 16 2 C -0.15 -0.88 9.52 -36.03 -0.34 -1.22 16 3 C -0.10 -0.51 5.66 -27.88 -0.16 -0.67 16 4 C -0.11 -0.63 5.20 -26.73 -0.14 -0.77 16 5 C -0.12 -0.65 5.21 -26.73 -0.14 -0.79 16 6 C -0.12 -0.77 5.28 -26.73 -0.14 -0.91 16 7 C 0.02 0.17 4.81 -3.82 -0.02 0.16 16 8 N -0.47 -4.43 6.15 -240.94 -1.48 -5.91 16 9 C -0.02 -0.19 6.67 -2.99 -0.02 -0.21 16 10 C 0.07 0.81 1.21 -90.51 -0.11 0.70 16 11 C 0.03 0.26 6.52 -2.99 -0.02 0.24 16 12 C 0.12 1.69 5.79 -4.39 -0.03 1.67 16 13 N -0.60 -10.93 2.83 -174.67 -0.50 -11.42 16 14 C 0.11 2.47 5.20 -4.04 -0.02 2.45 16 15 C 0.01 0.38 5.29 -27.88 -0.15 0.24 16 16 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.48 8.91 7.57 -11.72 -0.09 8.82 16 25 O -0.54 -12.36 16.33 5.56 0.09 -12.27 16 26 C 0.05 0.72 6.67 35.75 0.24 0.96 16 27 O -0.36 -4.78 10.66 -35.23 -0.38 -5.15 16 28 H 0.10 0.48 7.84 -52.48 -0.41 0.07 16 29 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 30 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.07 0.35 7.79 -51.92 -0.40 -0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.44 7.54 -51.93 -0.39 0.04 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.04 0.30 7.70 -51.93 -0.40 -0.10 16 41 H 0.10 1.04 8.09 -51.93 -0.42 0.61 16 42 H 0.08 0.71 7.79 -51.93 -0.40 0.31 16 43 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 44 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 45 H 0.10 1.27 7.88 -51.93 -0.41 0.86 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.07 1.73 7.29 -51.93 -0.38 1.35 16 48 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 52 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 53 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 LS Contribution 425.04 15.07 6.41 6.41 Total: -1.00 -33.82 425.04 -11.18 -44.99 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -9.91 Total: -3.16 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.13 Total: -3.78 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -1.24 Total: -44.06 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.28 Total: -17.43 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.82 -11.18 -44.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272700128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.447 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds