Wall clock time and date at job start Tue Mar 31 2020 19:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00356 * 2 1 4 4 C 1.53005 * 109.47019 * 125.00129 * 3 2 1 5 5 C 1.52999 * 109.47145 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.46988 * 180.02562 * 5 4 3 7 7 C 1.53009 * 109.47045 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47135 * 179.97438 * 7 6 5 9 9 C 1.48054 * 111.00150 * 170.00056 * 8 7 6 10 10 C 1.53398 * 86.02491 * 222.77488 * 9 8 7 11 11 C 1.48062 * 110.99861 * 70.54686 * 8 7 6 12 12 C 1.52563 * 113.80509 * 268.71612 * 10 9 8 13 13 N 1.46271 * 109.56650 * 273.97854 * 12 10 9 14 14 C 1.46503 * 118.71402 * 163.92105 * 13 12 10 15 15 C 1.52998 * 109.47013 * 90.00177 * 14 13 12 16 16 C 1.50699 * 109.47172 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46914 * 90.00147 * 20 18 16 22 22 H 1.48493 * 109.47499 * 209.99857 * 20 18 16 23 23 H 1.48498 * 109.47217 * 330.00516 * 20 18 16 24 24 C 1.33712 * 122.56694 * 343.92231 * 13 12 10 25 25 O 1.21282 * 118.37931 * 183.25932 * 24 13 12 26 26 C 1.50163 * 123.24130 * 3.23823 * 24 13 12 27 27 O 1.42681 * 113.76711 * 138.11412 * 10 9 8 28 28 H 1.08004 * 119.99477 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.00140 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99918 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46610 * 5.00426 * 3 2 1 32 32 H 1.08998 * 109.47743 * 245.00697 * 3 2 1 33 33 H 1.09002 * 109.46701 * 60.00140 * 4 3 2 34 34 H 1.09002 * 109.46933 * 300.00512 * 4 3 2 35 35 H 1.09007 * 109.46795 * 60.00107 * 5 4 3 36 36 H 1.08997 * 109.46913 * 300.00488 * 5 4 3 37 37 H 1.08998 * 109.47351 * 60.00119 * 6 5 4 38 38 H 1.09000 * 109.47057 * 299.99553 * 6 5 4 39 39 H 1.09007 * 109.46813 * 59.99766 * 7 6 5 40 40 H 1.08997 * 109.46838 * 300.00182 * 7 6 5 41 41 H 1.08993 * 113.78984 * 108.49572 * 9 8 7 42 42 H 1.09002 * 113.78491 * 337.05011 * 9 8 7 43 43 H 1.09001 * 113.78482 * 22.95195 * 11 8 7 44 44 H 1.09007 * 113.78819 * 251.50526 * 11 8 7 45 45 H 1.08997 * 109.45597 * 34.01159 * 12 10 9 46 46 H 1.09004 * 109.44959 * 153.94964 * 12 10 9 47 47 H 1.08996 * 109.46694 * 210.00179 * 14 13 12 48 48 H 1.09000 * 109.47017 * 330.00267 * 14 13 12 49 49 H 1.09004 * 109.47037 * 300.00074 * 15 14 13 50 50 H 1.08996 * 109.47281 * 59.99695 * 15 14 13 51 51 H 0.96995 * 120.00011 * 180.02562 * 19 18 16 52 52 H 1.09000 * 109.35284 * 222.12682 * 26 24 13 53 53 H 1.08998 * 109.35259 * 102.56378 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3329 1.1817 5 6 3.7999 2.6582 1.1821 6 6 4.7718 2.6857 2.3633 7 6 5.5360 4.0113 2.3640 8 7 6.4688 4.0381 3.4985 9 6 7.3916 5.1916 3.3996 10 6 8.4918 4.2116 3.8266 11 6 7.5901 3.0949 3.2858 12 6 8.7108 4.1510 5.3352 13 7 9.6449 5.2023 5.7373 14 6 9.7297 5.5643 7.1543 15 6 10.7911 4.7006 7.8387 16 6 10.8779 5.0725 9.2965 17 1 10.2402 5.8477 9.6949 18 6 11.7722 4.4238 10.1213 19 7 12.5499 3.4808 9.6358 20 14 11.8803 4.8853 11.9282 21 1 10.9344 4.0493 12.7100 22 1 13.2638 4.6551 12.4160 23 1 11.5286 6.3184 12.0950 24 6 10.4244 5.8459 4.8620 25 8 11.2144 6.6628 5.2855 26 6 10.3702 5.6068 3.3805 27 8 9.7123 4.3669 3.1041 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6214 1.4027 -0.9314 33 1 3.7401 0.5063 1.0920 34 1 2.4774 1.2354 2.1130 35 1 3.0946 3.4845 1.2719 36 1 4.3575 2.7561 0.2507 37 1 5.4769 1.8595 2.2730 38 1 4.2144 2.5877 3.2948 39 1 4.8306 4.8373 2.4545 40 1 6.0933 4.1099 1.4325 41 1 7.1942 5.9763 4.1299 42 1 7.5118 5.5728 2.3855 43 1 7.7692 2.8540 2.2379 44 1 7.5505 2.2132 3.9256 45 1 7.7591 4.2959 5.8464 46 1 9.1221 3.1778 5.6034 47 1 10.0030 6.6156 7.2450 48 1 8.7634 5.3977 7.6304 49 1 10.5178 3.6493 7.7479 50 1 11.7573 4.8671 7.3627 51 1 13.1787 3.0242 10.2162 52 1 11.3844 5.5740 2.9825 53 1 9.8234 6.4200 2.9031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272700128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:40 Heat of formation + Delta-G solvation = -60.889126 kcal Electronic energy + Delta-G solvation = -28913.936469 eV Core-core repulsion = 24978.789911 eV Total energy + Delta-G solvation = -3935.146558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.40985 -40.58096 -38.16051 -37.33471 -36.99814 -35.18087 -34.91268 -32.36312 -31.77649 -29.97376 -28.70201 -27.31661 -27.25072 -26.32353 -24.91330 -23.50357 -22.41004 -21.83058 -21.22291 -20.53489 -19.33427 -18.88521 -18.72364 -17.64852 -17.17260 -16.97329 -16.83063 -16.50066 -16.34146 -16.01367 -15.73332 -15.25195 -15.07803 -14.95038 -14.69086 -14.45847 -14.36606 -14.28380 -14.14519 -13.85997 -13.45862 -13.40810 -13.19019 -12.97240 -12.85333 -12.72236 -12.60609 -12.40733 -12.26137 -11.97862 -11.94044 -11.89439 -11.75842 -11.67787 -11.47960 -11.36612 -11.32516 -11.15572 -10.60006 -10.44844 -10.15796 -9.89883 -9.70932 -8.23699 -6.36692 1.38239 1.41329 1.43215 1.45150 1.52526 1.81535 2.38771 2.44233 2.83009 3.09653 3.21292 3.25919 3.61095 3.75103 3.91779 4.04918 4.06144 4.12395 4.22057 4.23962 4.29822 4.35536 4.39117 4.42758 4.47365 4.50765 4.59189 4.62472 4.66259 4.68923 4.72748 4.77486 4.84717 4.89969 4.91945 4.96670 5.02546 5.11166 5.14639 5.17940 5.24851 5.38039 5.41877 5.48485 5.54357 5.54958 5.73899 5.79398 5.80167 5.92487 5.98080 6.14536 6.41446 6.78255 7.03984 7.32958 8.88618 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.001863 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.100998 B =15022.057322 C =16302.731425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.095 4.095 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.111 4.111 7 C 0.025 3.975 8 N -0.480 5.480 9 C -0.009 4.009 10 C 0.060 3.940 11 C 0.037 3.963 12 C 0.114 3.886 13 N -0.598 5.598 14 C 0.129 3.871 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.263 1.263 24 C 0.469 3.531 25 O -0.592 6.592 26 C 0.064 3.936 27 O -0.362 6.362 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.089 0.911 49 H -0.004 1.004 50 H -0.026 1.026 51 H 0.264 0.736 52 H 0.138 0.862 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.727 -3.688 -23.255 32.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.181 4.181 3 C -0.132 4.132 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.103 4.103 8 N -0.204 5.204 9 C -0.138 4.138 10 C 0.020 3.980 11 C -0.092 4.092 12 C -0.008 4.008 13 N -0.329 5.329 14 C 0.007 3.993 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.188 1.188 24 C 0.258 3.742 25 O -0.474 6.474 26 C -0.015 4.015 27 O -0.280 6.280 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.107 0.893 49 H 0.015 0.985 50 H -0.008 1.008 51 H 0.073 0.927 52 H 0.156 0.844 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.585 -3.607 -22.584 32.142 hybrid contribution 1.004 0.188 0.586 1.178 sum -21.581 -3.418 -21.998 31.005 Atomic orbital electron populations 1.24009 0.96158 1.02325 1.01551 1.23141 0.96303 0.99056 0.99606 1.20791 0.98226 0.95071 0.99083 1.21494 0.97718 0.97793 0.97951 1.21514 0.97836 0.97591 0.98118 1.21493 0.98124 0.96259 0.99042 1.22704 0.96197 0.99567 0.91878 1.68583 1.08999 1.03199 1.39586 1.24524 0.90925 0.95511 1.02802 1.23506 0.83951 1.00234 0.90343 1.24042 0.86798 0.95856 1.02483 1.21858 0.94002 0.90652 0.94317 1.47743 1.39756 1.37252 1.08190 1.21513 1.00029 0.99052 0.78693 1.19148 0.93024 0.94259 0.94739 1.21543 1.21447 1.20517 0.94794 0.91563 1.26036 0.94783 0.94722 1.04272 1.70127 1.23935 1.25515 1.37704 0.85344 0.77521 0.79105 0.78440 1.19075 1.20890 1.18767 1.21683 0.79967 0.81005 0.91573 1.90730 1.38633 1.37816 1.80223 1.22748 1.01795 0.88761 0.88146 1.88105 1.36683 1.37791 1.65378 0.88337 0.88045 0.87194 0.91503 0.90602 0.91857 0.92482 0.91694 0.91428 0.91860 0.91959 0.90115 0.92993 0.89190 0.88339 0.88195 0.87479 0.87392 0.91533 0.92334 0.89269 0.98547 1.00761 0.92726 0.84431 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 14.32 67.78 0.97 -1.09 16 2 C -0.16 -1.70 9.52 25.64 0.24 -1.46 16 3 C -0.09 -0.87 5.66 29.85 0.17 -0.70 16 4 C -0.11 -1.07 5.20 30.60 0.16 -0.91 16 5 C -0.11 -1.00 5.21 30.59 0.16 -0.84 16 6 C -0.11 -1.24 5.28 30.60 0.16 -1.08 16 7 C 0.02 0.30 4.81 86.31 0.42 0.72 16 8 N -0.48 -7.83 6.15 -920.47 -5.66 -13.49 16 9 C -0.01 -0.15 6.67 86.21 0.58 0.42 16 10 C 0.06 1.32 1.21 -10.65 -0.01 1.31 16 11 C 0.04 0.61 6.52 86.20 0.56 1.17 16 12 C 0.11 3.26 5.79 86.28 0.50 3.76 16 13 N -0.60 -22.28 2.83 -825.53 -2.34 -24.62 16 14 C 0.13 5.74 5.20 86.38 0.45 6.19 16 15 C 0.03 1.48 5.29 29.85 0.16 1.64 16 16 C -0.54 -32.19 9.11 25.60 0.23 -31.96 16 17 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -58.88 13.29 21.45 0.28 -58.59 16 20 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.47 17.66 7.57 87.65 0.66 18.33 16 25 O -0.59 -28.19 16.33 -3.04 -0.05 -28.24 16 26 C 0.06 1.65 6.67 71.07 0.47 2.13 16 27 O -0.36 -8.92 10.66 -148.98 -1.59 -10.51 16 28 H 0.10 0.90 7.84 -2.91 -0.02 0.88 16 29 H 0.10 0.87 8.06 -2.92 -0.02 0.84 16 30 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.07 0.60 7.79 -2.38 -0.02 0.58 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.72 7.54 -2.39 -0.02 0.70 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.05 0.55 7.70 -2.39 -0.02 0.54 16 41 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 42 H 0.10 1.38 7.79 -2.39 -0.02 1.36 16 43 H 0.10 1.39 7.79 -2.39 -0.02 1.38 16 44 H 0.11 1.72 8.09 -2.38 -0.02 1.71 16 45 H 0.11 2.78 7.88 -2.39 -0.02 2.77 16 46 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.06 2.79 7.29 -2.39 -0.02 2.77 16 48 H 0.09 3.50 7.96 -2.39 -0.02 3.48 16 49 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 50 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 51 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 52 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 53 H 0.12 2.25 7.92 -2.39 -0.02 2.23 16 Total: -1.00 -75.82 425.04 -0.15 -75.97 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.84 Total: 13.99 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 6.34 Total: -1.95 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -7.72 Total: -96.71 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.64 Total: -38.75 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.82 -0.15 -75.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272700128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.079 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds