Wall clock time and date at job start Tue Mar 31 2020 19:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47277 * 2 1 4 4 C 1.30999 * 120.00109 * 126.33451 * 3 2 1 5 5 C 1.50701 * 120.00013 * 7.53701 * 4 3 2 6 6 C 1.52999 * 109.47170 * 127.61759 * 5 4 3 7 7 C 1.52999 * 109.47226 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47178 * 180.02562 * 7 6 5 9 9 C 1.48065 * 111.00012 * 169.99845 * 8 7 6 10 10 C 1.53388 * 86.02461 * 222.76336 * 9 8 7 11 11 C 1.48060 * 111.00232 * 70.54530 * 8 7 6 12 12 C 1.52552 * 113.83469 * 138.14486 * 10 9 8 13 13 N 1.46273 * 109.57054 * 176.50379 * 12 10 9 14 14 C 1.46505 * 118.71174 * 163.90815 * 13 12 10 15 15 C 1.53005 * 109.46910 * 90.00397 * 14 13 12 16 16 C 1.50703 * 109.46930 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00065 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99875 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00295 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00081 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47257 * 60.00128 * 20 18 16 22 22 H 1.48499 * 109.47245 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46901 * 300.00197 * 20 18 16 24 24 C 1.33714 * 122.57006 * 344.18746 * 13 12 10 25 25 O 1.21282 * 118.38438 * 182.95730 * 24 13 12 26 26 C 1.50145 * 123.24969 * 2.72687 * 24 13 12 27 27 O 1.42680 * 113.79265 * 268.80357 * 10 9 8 28 28 H 1.08999 * 109.47686 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47044 * 300.00274 * 1 2 3 30 30 H 1.09001 * 109.47402 * 59.99814 * 1 2 3 31 31 H 1.09003 * 109.47044 * 239.99726 * 2 1 3 32 32 H 1.09006 * 109.46932 * 120.00274 * 2 1 3 33 33 H 1.07999 * 120.00058 * 306.32914 * 3 2 1 34 34 H 1.08001 * 120.00247 * 187.54377 * 4 3 2 35 35 H 1.09006 * 109.47188 * 7.62280 * 5 4 3 36 36 H 1.08998 * 109.47393 * 247.61938 * 5 4 3 37 37 H 1.09007 * 109.47379 * 60.00106 * 6 5 4 38 38 H 1.09004 * 109.47408 * 300.00641 * 6 5 4 39 39 H 1.08994 * 109.47331 * 59.99915 * 7 6 5 40 40 H 1.09005 * 109.47077 * 299.99652 * 7 6 5 41 41 H 1.08993 * 113.78344 * 108.48831 * 9 8 7 42 42 H 1.08995 * 113.78443 * 337.03995 * 9 8 7 43 43 H 1.09005 * 113.78048 * 22.95655 * 11 8 7 44 44 H 1.08998 * 113.78753 * 251.51016 * 11 8 7 45 45 H 1.08995 * 109.45511 * 56.47197 * 12 10 9 46 46 H 1.09003 * 109.45643 * 296.53248 * 12 10 9 47 47 H 1.09000 * 109.46841 * 209.99339 * 14 13 12 48 48 H 1.08995 * 109.47700 * 330.00031 * 14 13 12 49 49 H 1.09006 * 109.46911 * 299.99335 * 15 14 13 50 50 H 1.08995 * 109.47238 * 59.99351 * 15 14 13 51 51 H 0.96998 * 120.00474 * 180.02562 * 19 18 16 52 52 H 1.08996 * 109.48429 * 222.45336 * 26 24 13 53 53 H 1.09006 * 109.04182 * 102.85992 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8844 1.8142 0.9139 5 6 3.4924 0.8104 1.8593 6 6 5.0161 0.9477 1.8381 7 6 5.6334 -0.0719 2.7975 8 7 7.0963 0.0603 2.7776 9 6 7.7159 -0.7370 3.8605 10 6 8.6242 0.4776 4.0897 11 6 7.5243 1.3188 3.4296 12 6 8.8523 0.8077 5.5615 13 7 9.7924 1.9227 5.6736 14 6 9.8869 2.6383 6.9485 15 6 10.9494 1.9756 7.8277 16 6 11.0470 2.7120 9.1389 17 1 10.4143 3.5669 9.3266 18 6 11.9434 2.2937 10.0993 19 7 12.7136 1.2524 9.8711 20 14 12.0640 3.2060 11.7249 21 1 10.7506 3.1612 12.4163 22 1 13.0953 2.5629 12.5782 23 1 12.4424 4.6196 11.4723 24 6 10.5650 2.3179 4.6562 25 8 11.3569 3.2161 4.8487 26 6 10.5043 1.7013 3.2886 27 8 9.8406 0.4354 3.3453 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6899 2.1146 -0.7535 34 1 3.1511 2.8580 0.9899 35 1 3.2140 -0.1966 1.5483 36 1 3.1251 0.9934 2.8691 37 1 5.2946 1.9546 2.1490 38 1 5.3834 0.7647 0.8283 39 1 5.3549 -1.0786 2.4862 40 1 5.2661 0.1108 3.8074 41 1 8.2457 -1.6215 3.5071 42 1 7.0434 -0.9462 4.6923 43 1 6.7948 1.7193 4.1336 44 1 7.9019 2.0681 2.7338 45 1 9.2619 -0.0650 6.0701 46 1 7.9042 1.0846 6.0227 47 1 10.1645 3.6759 6.7630 48 1 8.9230 2.6051 7.4561 49 1 10.6719 0.9379 8.0132 50 1 11.9133 2.0087 7.3201 51 1 13.3440 0.9579 10.5469 52 1 11.5158 1.5620 2.9074 53 1 9.9557 2.3671 2.6223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273115650.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:43 Heat of formation + Delta-G solvation = -53.442590 kcal Electronic energy + Delta-G solvation = -29131.420563 eV Core-core repulsion = 25196.596912 eV Total energy + Delta-G solvation = -3934.823652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.39588 -40.56820 -38.25130 -37.53574 -37.01848 -35.14574 -34.49720 -32.26786 -31.65928 -30.08896 -28.84767 -27.53675 -27.17598 -26.34576 -24.63013 -23.95771 -23.37310 -22.09244 -21.25215 -19.69405 -19.13862 -18.75832 -18.57823 -17.59258 -17.23114 -16.99568 -16.76520 -16.58020 -16.24476 -16.03281 -15.62594 -15.25551 -15.05269 -14.88280 -14.82374 -14.59242 -14.34249 -14.28947 -14.20963 -13.74706 -13.43852 -13.33302 -13.14023 -12.94707 -12.83557 -12.83110 -12.67085 -12.61824 -12.47187 -12.02049 -11.92816 -11.88239 -11.82897 -11.74364 -11.50557 -11.46961 -11.19897 -11.08420 -10.59581 -10.41842 -9.83756 -9.78507 -9.63466 -8.23412 -6.36576 1.35941 1.38296 1.42969 1.44697 1.50763 1.84269 2.38097 2.41602 2.81799 3.09897 3.21099 3.32891 3.59508 3.77135 3.98083 4.05356 4.10507 4.11400 4.22954 4.23107 4.30223 4.35973 4.38723 4.40967 4.51851 4.52937 4.56105 4.57916 4.66754 4.66898 4.74072 4.77079 4.80507 4.85323 4.89727 4.91096 4.96393 5.11497 5.14906 5.26231 5.27516 5.35086 5.38020 5.42226 5.45858 5.54910 5.76818 5.82421 5.84272 6.00751 6.05525 6.14637 6.41228 6.78474 7.04133 7.33141 8.88533 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.001914 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.707610 B =14628.284597 C =15314.228262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.167 4.167 4 C -0.167 4.167 5 C -0.095 4.095 6 C -0.102 4.102 7 C 0.020 3.980 8 N -0.480 5.480 9 C 0.034 3.966 10 C 0.063 3.937 11 C -0.010 4.010 12 C 0.095 3.905 13 N -0.598 5.598 14 C 0.128 3.872 15 C 0.026 3.974 16 C -0.546 4.546 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.971 3.029 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.471 3.529 25 O -0.592 6.592 26 C 0.064 3.936 27 O -0.346 6.346 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.057 0.943 48 H 0.093 0.907 49 H -0.002 1.002 50 H -0.028 1.028 51 H 0.264 0.736 52 H 0.138 0.862 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.746 -5.109 -19.548 31.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.185 4.185 4 C -0.185 4.185 5 C -0.132 4.132 6 C -0.140 4.140 7 C -0.108 4.108 8 N -0.203 5.203 9 C -0.095 4.095 10 C 0.022 3.978 11 C -0.139 4.139 12 C -0.028 4.028 13 N -0.329 5.329 14 C 0.006 3.994 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.196 1.196 24 C 0.259 3.741 25 O -0.474 6.474 26 C -0.015 4.015 27 O -0.263 6.263 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.131 0.869 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.016 0.984 50 H -0.010 1.010 51 H 0.073 0.927 52 H 0.155 0.845 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.018 -5.091 -20.175 31.777 hybrid contribution 0.450 0.866 1.780 2.030 sum -23.567 -4.225 -18.395 30.194 Atomic orbital electron populations 1.21694 0.94761 1.02069 1.01823 1.20852 0.96426 0.94298 1.02969 1.22957 0.98735 0.98107 0.98669 1.22889 0.98436 0.99508 0.97651 1.20801 0.94229 0.99010 0.99179 1.21358 0.94318 0.98655 0.99640 1.22751 0.87727 1.00979 0.99387 1.68630 1.10169 1.03588 1.37876 1.24041 0.94413 0.96133 0.94867 1.23142 0.85562 1.00290 0.88820 1.24524 0.96508 0.94916 0.97942 1.22292 0.94223 0.89109 0.97160 1.47726 1.39863 1.33184 1.12102 1.21532 1.00120 0.95541 0.82161 1.19154 0.93036 0.95215 0.93820 1.21522 1.21615 1.14544 1.00702 0.91493 1.26030 0.94848 0.95891 1.03028 1.70118 1.24050 1.26838 1.36241 0.85416 0.78476 0.78467 0.78158 1.18297 1.20861 1.19581 1.21612 0.80044 0.83691 0.88710 1.90729 1.38479 1.33793 1.84403 1.22742 1.01440 0.86182 0.91113 1.88100 1.35417 1.29808 1.73018 0.91893 0.93001 0.92626 0.91182 0.90282 0.87265 0.87540 0.89938 0.90865 0.92439 0.92217 0.89632 0.92731 0.87829 0.86908 0.88483 0.89218 0.91222 0.86905 0.92464 0.88879 0.98388 1.00954 0.92741 0.84465 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 71.98 0.71 -0.56 16 2 C -0.11 -1.07 6.04 29.84 0.18 -0.89 16 3 C -0.17 -1.95 9.51 25.65 0.24 -1.71 16 4 C -0.17 -2.04 9.51 25.65 0.24 -1.79 16 5 C -0.09 -1.01 5.30 29.85 0.16 -0.85 16 6 C -0.10 -1.26 5.26 30.59 0.16 -1.10 16 7 C 0.02 0.24 4.82 86.30 0.42 0.65 16 8 N -0.48 -7.94 6.26 -920.45 -5.77 -13.70 16 9 C 0.03 0.54 7.38 86.20 0.64 1.18 16 10 C 0.06 1.35 1.16 -10.65 -0.01 1.34 16 11 C -0.01 -0.18 6.22 86.21 0.54 0.36 16 12 C 0.09 2.46 5.88 86.27 0.51 2.97 16 13 N -0.60 -21.51 2.84 -825.55 -2.34 -23.85 16 14 C 0.13 5.52 5.21 86.38 0.45 5.97 16 15 C 0.03 1.42 5.29 29.85 0.16 1.58 16 16 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 17 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 20 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.47 17.72 7.57 87.65 0.66 18.38 16 25 O -0.59 -28.23 16.33 -3.04 -0.05 -28.28 16 26 C 0.06 1.74 6.65 71.06 0.47 2.21 16 27 O -0.35 -9.16 10.66 -148.98 -1.59 -10.74 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.73 5.28 -2.38 -0.01 0.72 16 33 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.08 0.79 5.30 -2.38 -0.01 0.78 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.77 7.54 -2.38 -0.02 0.75 16 38 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.55 7.70 -2.38 -0.02 0.54 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.11 1.25 7.75 -2.39 -0.02 1.23 16 43 H 0.10 1.40 7.55 -2.38 -0.02 1.38 16 44 H 0.09 1.66 7.01 -2.39 -0.02 1.64 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 46 H 0.11 2.25 7.77 -2.39 -0.02 2.23 16 47 H 0.06 2.67 7.28 -2.39 -0.02 2.65 16 48 H 0.09 3.41 7.96 -2.39 -0.02 3.40 16 49 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 50 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 51 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 52 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 53 H 0.11 2.44 7.15 -2.38 -0.02 2.42 16 Total: -1.00 -76.51 418.65 -0.35 -76.86 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.86 Total: 14.17 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.22 Total: -3.26 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -7.82 Total: -95.59 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.64 Total: -39.02 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.51 -0.35 -76.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273115650.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.421 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds